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{{MCL_coexpression_mm9|gostat_on_MCL_coexpression=GO:0006732;coenzyme metabolic process;0.00158271079552393;171282,14854,29807!GO:0051186;cofactor metabolic process;0.00158271079552393;171282,14854,29807!GO:0003707;steroid hormone receptor activity;0.00385919243044701;19885,15378!GO:0004879;ligand-dependent nuclear receptor activity;0.00385919243044701;19885,15378!GO:0009108;coenzyme biosynthetic process;0.00457210022760891;14854,29807!GO:0042357;thiamin diphosphate metabolic process;0.00457210022760891;29807!GO:0004363;glutathione synthase activity;0.00457210022760891;14854!GO:0009229;thiamin diphosphate biosynthetic process;0.00457210022760891;29807!GO:0004371;glycerone kinase activity;0.00457210022760891;225913!GO:0042724;thiamin and derivative biosynthetic process;0.00457210022760891;29807!GO:0004788;thiamin diphosphokinase activity;0.00457210022760891;29807!GO:0051188;cofactor biosynthetic process;0.00516392620901728;14854,29807!GO:0006772;thiamin metabolic process;0.00670482850567052;29807!GO:0048537;mucosal-associated lymphoid tissue development;0.00670482850567052;19885!GO:0042723;thiamin and derivative metabolic process;0.00670482850567052;29807!GO:0006104;succinyl-CoA metabolic process;0.00887282225080137;171282!GO:0046459;short-chain fatty acid metabolic process;0.00887282225080137;171282!GO:0044237;cellular metabolic process;0.012659751575851;171282,14854,19885,15378,29807,225913!GO:0006750;glutathione biosynthetic process;0.0158711586352915;14854!GO:0016778;diphosphotransferase activity;0.0175881248661717;29807!GO:0043648;dicarboxylic acid metabolic process;0.0215305804242013;171282!GO:0016290;palmitoyl-CoA hydrolase activity;0.0251121303351356;171282!GO:0006637;acyl-CoA metabolic process;0.0271973565350132;171282!GO:0016291;acyl-CoA thioesterase activity;0.0271973565350132;171282!GO:0016439;tRNA-pseudouridine synthase activity;0.0280890825215545;15378!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0280890825215545;171282!GO:0016289;CoA hydrolase activity;0.0280890825215545;171282!GO:0005524;ATP binding;0.0280890825215545;14854,29807,225913!GO:0032559;adenyl ribonucleotide binding;0.0280890825215545;14854,29807,225913!GO:0048535;lymph node development;0.0280890825215545;19885!GO:0009982;pseudouridine synthase activity;0.0280890825215545;15378!GO:0006071;glycerol metabolic process;0.0280890825215545;225913!GO:0006749;glutathione metabolic process;0.0280890825215545;14854!GO:0030554;adenyl nucleotide binding;0.0280890825215545;14854,29807,225913!GO:0019751;polyol metabolic process;0.0286642222772942;225913!GO:0046632;alpha-beta T cell differentiation;0.0292573863030531;19885!GO:0043565;sequence-specific DNA binding;0.0319626946343949;19885,15378!GO:0033077;T cell differentiation in the thymus;0.0329789809096057;19885!GO:0016866;intramolecular transferase activity;0.0361091449643436;15378!GO:0044272;sulfur compound biosynthetic process;0.0361091449643436;14854!GO:0032553;ribonucleotide binding;0.0361091449643436;14854,29807,225913!GO:0032555;purine ribonucleotide binding;0.0361091449643436;14854,29807,225913!GO:0046631;alpha-beta T cell activation;0.0361091449643436;19885!GO:0017076;purine nucleotide binding;0.039258165142745;14854,29807,225913!GO:0006767;water-soluble vitamin metabolic process;0.0433610996112219;29807!GO:0006629;lipid metabolic process;0.0464976064349754;171282,15378!GO:0005496;steroid binding;0.0499772616505179;15378!}}
{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=GO:0006732;coenzyme metabolic process;0.00158271079552393;171282,14854,29807!GO:0051186;cofactor metabolic process;0.00158271079552393;171282,14854,29807!GO:0003707;steroid hormone receptor activity;0.00385919243044701;19885,15378!GO:0004879;ligand-dependent nuclear receptor activity;0.00385919243044701;19885,15378!GO:0009108;coenzyme biosynthetic process;0.00457210022760891;14854,29807!GO:0042357;thiamin diphosphate metabolic process;0.00457210022760891;29807!GO:0004363;glutathione synthase activity;0.00457210022760891;14854!GO:0009229;thiamin diphosphate biosynthetic process;0.00457210022760891;29807!GO:0004371;glycerone kinase activity;0.00457210022760891;225913!GO:0042724;thiamin and derivative biosynthetic process;0.00457210022760891;29807!GO:0004788;thiamin diphosphokinase activity;0.00457210022760891;29807!GO:0051188;cofactor biosynthetic process;0.00516392620901728;14854,29807!GO:0006772;thiamin metabolic process;0.00670482850567052;29807!GO:0048537;mucosal-associated lymphoid tissue development;0.00670482850567052;19885!GO:0042723;thiamin and derivative metabolic process;0.00670482850567052;29807!GO:0006104;succinyl-CoA metabolic process;0.00887282225080137;171282!GO:0046459;short-chain fatty acid metabolic process;0.00887282225080137;171282!GO:0044237;cellular metabolic process;0.012659751575851;171282,14854,19885,15378,29807,225913!GO:0006750;glutathione biosynthetic process;0.0158711586352915;14854!GO:0016778;diphosphotransferase activity;0.0175881248661717;29807!GO:0043648;dicarboxylic acid metabolic process;0.0215305804242013;171282!GO:0016290;palmitoyl-CoA hydrolase activity;0.0251121303351356;171282!GO:0006637;acyl-CoA metabolic process;0.0271973565350132;171282!GO:0016291;acyl-CoA thioesterase activity;0.0271973565350132;171282!GO:0016439;tRNA-pseudouridine synthase activity;0.0280890825215545;15378!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0280890825215545;171282!GO:0016289;CoA hydrolase activity;0.0280890825215545;171282!GO:0005524;ATP binding;0.0280890825215545;14854,29807,225913!GO:0032559;adenyl ribonucleotide binding;0.0280890825215545;14854,29807,225913!GO:0048535;lymph node development;0.0280890825215545;19885!GO:0009982;pseudouridine synthase activity;0.0280890825215545;15378!GO:0006071;glycerol metabolic process;0.0280890825215545;225913!GO:0006749;glutathione metabolic process;0.0280890825215545;14854!GO:0030554;adenyl nucleotide binding;0.0280890825215545;14854,29807,225913!GO:0019751;polyol metabolic process;0.0286642222772942;225913!GO:0046632;alpha-beta T cell differentiation;0.0292573863030531;19885!GO:0043565;sequence-specific DNA binding;0.0319626946343949;19885,15378!GO:0033077;T cell differentiation in the thymus;0.0329789809096057;19885!GO:0016866;intramolecular transferase activity;0.0361091449643436;15378!GO:0044272;sulfur compound biosynthetic process;0.0361091449643436;14854!GO:0032553;ribonucleotide binding;0.0361091449643436;14854,29807,225913!GO:0032555;purine ribonucleotide binding;0.0361091449643436;14854,29807,225913!GO:0046631;alpha-beta T cell activation;0.0361091449643436;19885!GO:0017076;purine nucleotide binding;0.039258165142745;14854,29807,225913!GO:0006767;water-soluble vitamin metabolic process;0.0433610996112219;29807!GO:0006629;lipid metabolic process;0.0464976064349754;171282,15378!GO:0005496;steroid binding;0.0499772616505179;15378!
}}

Revision as of 11:15, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr12:85379338..85379385,+p1@Acot4
Mm9::chr18:61879449..61879487,-p@chr18:61879449..61879487
-
Mm9::chr19:10678794..10678805,-p4@Dak
Mm9::chr2:155418444..155418506,-p1@Gss
Mm9::chr2:163367451..163367464,-p1@0610008F07Rik
Mm9::chr2:163372869..163372882,+p3@Hnf4a
Mm9::chr2:163372884..163372904,+p1@Hnf4a
Mm9::chr3:94176733..94176794,+p1@Rorc
Mm9::chr6:43616157..43616223,-p1@Tpk1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0006732coenzyme metabolic process0.00158271079552393
GO:0051186cofactor metabolic process0.00158271079552393
GO:0003707steroid hormone receptor activity0.00385919243044701
GO:0004879ligand-dependent nuclear receptor activity0.00385919243044701
GO:0009108coenzyme biosynthetic process0.00457210022760891
GO:0042357thiamin diphosphate metabolic process0.00457210022760891
GO:0004363glutathione synthase activity0.00457210022760891
GO:0009229thiamin diphosphate biosynthetic process0.00457210022760891
GO:0004371glycerone kinase activity0.00457210022760891
GO:0042724thiamin and derivative biosynthetic process0.00457210022760891
GO:0004788thiamin diphosphokinase activity0.00457210022760891
GO:0051188cofactor biosynthetic process0.00516392620901728
GO:0006772thiamin metabolic process0.00670482850567052
GO:0048537mucosal-associated lymphoid tissue development0.00670482850567052
GO:0042723thiamin and derivative metabolic process0.00670482850567052
GO:0006104succinyl-CoA metabolic process0.00887282225080137
GO:0046459short-chain fatty acid metabolic process0.00887282225080137
GO:0044237cellular metabolic process0.012659751575851
GO:0006750glutathione biosynthetic process0.0158711586352915
GO:0016778diphosphotransferase activity0.0175881248661717
GO:0043648dicarboxylic acid metabolic process0.0215305804242013
GO:0016290palmitoyl-CoA hydrolase activity0.0251121303351356
GO:0006637acyl-CoA metabolic process0.0271973565350132
GO:0016291acyl-CoA thioesterase activity0.0271973565350132
GO:0016439tRNA-pseudouridine synthase activity0.0280890825215545
GO:0006100tricarboxylic acid cycle intermediate metabolic process0.0280890825215545
GO:0016289CoA hydrolase activity0.0280890825215545
GO:0005524ATP binding0.0280890825215545
GO:0032559adenyl ribonucleotide binding0.0280890825215545
GO:0048535lymph node development0.0280890825215545
GO:0009982pseudouridine synthase activity0.0280890825215545
GO:0006071glycerol metabolic process0.0280890825215545
GO:0006749glutathione metabolic process0.0280890825215545
GO:0030554adenyl nucleotide binding0.0280890825215545
GO:0019751polyol metabolic process0.0286642222772942
GO:0046632alpha-beta T cell differentiation0.0292573863030531
GO:0043565sequence-specific DNA binding0.0319626946343949
GO:0033077T cell differentiation in the thymus0.0329789809096057
GO:0016866intramolecular transferase activity0.0361091449643436
GO:0044272sulfur compound biosynthetic process0.0361091449643436
GO:0032553ribonucleotide binding0.0361091449643436
GO:0032555purine ribonucleotide binding0.0361091449643436
GO:0046631alpha-beta T cell activation0.0361091449643436
GO:0017076purine nucleotide binding0.039258165142745
GO:0006767water-soluble vitamin metabolic process0.0433610996112219
GO:0006629lipid metabolic process0.0464976064349754
GO:0005496steroid binding0.0499772616505179



Relative expression of the co-expression cluster over median <br>Analyst:



"{{{coexpression_dpi_cluster_scores_median}}}" is not a number.

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>


Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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