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{{MCL_coexpression_mm9|gostat_on_MCL_coexpression=GO:0045087;innate immune response;0.00662029788576228;81897,17079,27007!GO:0002376;immune system process;0.00982787891518943;81897,14991,14256,17079,27007!GO:0006955;immune response;0.0138557547202701;81897,14991,17079,27007!GO:0015794;glycerol-3-phosphate transport;0.0138557547202701;224674!GO:0015168;glycerol transmembrane transporter activity;0.0138557547202701;224674!GO:0015665;alcohol transmembrane transporter activity;0.0138557547202701;224674!GO:0015793;glycerol transport;0.0138557547202701;224674!GO:0015169;glycerol-3-phosphate transmembrane transporter activity;0.0138557547202701;224674!GO:0015166;polyol transmembrane transporter activity;0.0138557547202701;224674!GO:0006127;glycerophosphate shuttle;0.0138557547202701;224674!GO:0032394;MHC class Ib receptor activity;0.0138557547202701;27007!GO:0006952;defense response;0.017404129739248;81897,14991,17079,27007!GO:0002223;stimulatory C-type lectin receptor signaling pathway;0.0217661712758409;27007!GO:0015791;polyol transport;0.0217661712758409;224674!GO:0002220;innate immune response activating cell surface receptor signaling pathway;0.0406034808888695;27007!}}
{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=GO:0045087;innate immune response;0.00662029788576228;81897,17079,27007!GO:0002376;immune system process;0.00982787891518943;81897,14991,14256,17079,27007!GO:0006955;immune response;0.0138557547202701;81897,14991,17079,27007!GO:0015794;glycerol-3-phosphate transport;0.0138557547202701;224674!GO:0015168;glycerol transmembrane transporter activity;0.0138557547202701;224674!GO:0015665;alcohol transmembrane transporter activity;0.0138557547202701;224674!GO:0015793;glycerol transport;0.0138557547202701;224674!GO:0015169;glycerol-3-phosphate transmembrane transporter activity;0.0138557547202701;224674!GO:0015166;polyol transmembrane transporter activity;0.0138557547202701;224674!GO:0006127;glycerophosphate shuttle;0.0138557547202701;224674!GO:0032394;MHC class Ib receptor activity;0.0138557547202701;27007!GO:0006952;defense response;0.017404129739248;81897,14991,17079,27007!GO:0002223;stimulatory C-type lectin receptor signaling pathway;0.0217661712758409;27007!GO:0015791;polyol transport;0.0217661712758409;224674!GO:0002220;innate immune response activating cell surface receptor signaling pathway;0.0406034808888695;27007!
}}

Revision as of 11:08, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr13:103483602..103483666,+p1@Cd180
Mm9::chr15:74787548..74787574,+p@chr15:74787548..74787574
+
Mm9::chr15:74787580..74787590,+p@chr15:74787580..74787590
+
Mm9::chr17:37407159..37407194,+p1@H2-M3
Mm9::chr17:47906140..47906150,+p6@Tfeb
Mm9::chr19:12873064..12873079,+p1@Lpxn
Mm9::chr2:156955718..156955728,-p6@Samhd1
Mm9::chr2:163471573..163471583,-p@chr2:163471573..163471583
-
Mm9::chr2:61425777..61425781,+p@chr2:61425777..61425781
+
Mm9::chr3:145812822..145812832,+p3@Mcoln2
Mm9::chr4:43467472..43467507,-p1@Cd72
p1@LOC100504743
Mm9::chr6:129573858..129573884,-p2@Klrk1
Mm9::chr6:29476741..29476752,+p4@Irf5
Mm9::chr7:52391761..52391821,-p2@Flt3l
p2@Rpl13a
Mm9::chr9:106124929..106124960,+p1@Tlr9
Mm9::chr9:106124969..106124997,+p2@Tlr9
Mm9::chr9:37063208..37063220,-p7@Slc37a2
Mm9::chr9:37063231..37063250,-p6@Slc37a2
Mm9::chr9:45077218..45077239,-p1@Il10ra


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0045087innate immune response0.00662029788576228
GO:0002376immune system process0.00982787891518943
GO:0006955immune response0.0138557547202701
GO:0015794glycerol-3-phosphate transport0.0138557547202701
GO:0015168glycerol transmembrane transporter activity0.0138557547202701
GO:0015665alcohol transmembrane transporter activity0.0138557547202701
GO:0015793glycerol transport0.0138557547202701
GO:0015169glycerol-3-phosphate transmembrane transporter activity0.0138557547202701
GO:0015166polyol transmembrane transporter activity0.0138557547202701
GO:0006127glycerophosphate shuttle0.0138557547202701
GO:0032394MHC class Ib receptor activity0.0138557547202701
GO:0006952defense response0.017404129739248
GO:0002223stimulatory C-type lectin receptor signaling pathway0.0217661712758409
GO:0015791polyol transport0.0217661712758409
GO:0002220innate immune response activating cell surface receptor signaling pathway0.0406034808888695



Relative expression of the co-expression cluster over median <br>Analyst:



"{{{coexpression_dpi_cluster_scores_median}}}" is not a number.

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>


Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}