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{{MCL_coexpression_mm9|gostat_on_MCL_coexpression=GO:0022410;circadian sleep/wake cycle process;0.00953111277264864;19215!GO:0042749;regulation of circadian sleep/wake cycle;0.00953111277264864;19215!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.00953111277264864;19215!GO:0050802;circadian sleep/wake cycle, sleep;0.00953111277264864;19215!GO:0042745;circadian sleep/wake cycle;0.00953111277264864;19215!GO:0042752;regulation of circadian rhythm;0.00953111277264864;19215!GO:0048512;circadian behavior;0.01191193276837;19215!GO:0030431;sleep;0.01191193276837;19215!GO:0007622;rhythmic behavior;0.0138577408101196;19215!GO:0046457;prostanoid biosynthetic process;0.0138577408101196;19215!GO:0001516;prostaglandin biosynthetic process;0.0138577408101196;19215!GO:0006693;prostaglandin metabolic process;0.0190465645434848;19215!GO:0006692;prostanoid metabolic process;0.0190465645434848;19215!GO:0046456;icosanoid biosynthetic process;0.0326217439820534;19215!GO:0007623;circadian rhythm;0.034024540262353;19215!GO:0006690;icosanoid metabolic process;0.034024540262353;19215!GO:0003018;vascular process in circulatory system;0.034024540262353;18158!GO:0035150;regulation of tube size;0.034024540262353;18158!GO:0050880;regulation of blood vessel size;0.034024540262353;18158!}}
{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=GO:0022410;circadian sleep/wake cycle process;0.00953111277264864;19215!GO:0042749;regulation of circadian sleep/wake cycle;0.00953111277264864;19215!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.00953111277264864;19215!GO:0050802;circadian sleep/wake cycle, sleep;0.00953111277264864;19215!GO:0042745;circadian sleep/wake cycle;0.00953111277264864;19215!GO:0042752;regulation of circadian rhythm;0.00953111277264864;19215!GO:0048512;circadian behavior;0.01191193276837;19215!GO:0030431;sleep;0.01191193276837;19215!GO:0007622;rhythmic behavior;0.0138577408101196;19215!GO:0046457;prostanoid biosynthetic process;0.0138577408101196;19215!GO:0001516;prostaglandin biosynthetic process;0.0138577408101196;19215!GO:0006693;prostaglandin metabolic process;0.0190465645434848;19215!GO:0006692;prostanoid metabolic process;0.0190465645434848;19215!GO:0046456;icosanoid biosynthetic process;0.0326217439820534;19215!GO:0007623;circadian rhythm;0.034024540262353;19215!GO:0006690;icosanoid metabolic process;0.034024540262353;19215!GO:0003018;vascular process in circulatory system;0.034024540262353;18158!GO:0035150;regulation of tube size;0.034024540262353;18158!GO:0050880;regulation of blood vessel size;0.034024540262353;18158!
}}

Revision as of 11:07, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:45008974..45009008,+p2@Popdc3
Mm9::chr10:45009496..45009506,-p3@ENSMUST00000162062
Mm9::chr13:12336352..12336379,-p@chr13:12336352..12336379
-
Mm9::chr13:97205911..97205922,-p1@Ankdd1b
Mm9::chr14:55608155..55608160,-p@chr14:55608155..55608160
-
Mm9::chr17:71419994..71419996,+p@chr17:71419994..71419996
+
Mm9::chr17:82130615..82130624,-p@chr17:82130615..82130624
-
Mm9::chr18:42376580..42376599,-p@chr18:42376580..42376599
-
Mm9::chr19:36188772..36188806,-p@chr19:36188772..36188806
-
Mm9::chr2:25324643..25324713,-p2@Ptgds
Mm9::chr3:142047969..142047976,-p@chr3:142047969..142047976
-
Mm9::chr4:147360001..147360012,+p1@Nppb
Mm9::chr4:147360152..147360158,+p@chr4:147360152..147360158
+
Mm9::chr7:51734602..51734605,+p@chr7:51734602..51734605
+
Mm9::chr8:15077718..15077725,+p@chr8:15077718..15077725
+
Mm9::chr8:59801830..59801837,-p@chr8:59801830..59801837
-
Mm9::chrX:139260164..139260200,+p8@Tmem164
Mm9::chrX:139260210..139260233,+p5@Tmem164
Mm9::chrX:139260241..139260259,+p9@Tmem164
Mm9::chrX:154149104..154149128,+p@chrX:154149104..154149128
+
Mm9::chrX:154149298..154149310,+p@chrX:154149298..154149310
+
Mm9::chrX:154149464..154149473,+p@chrX:154149464..154149473
+
Mm9::chrX:154149475..154149493,+p@chrX:154149475..154149493
+
Mm9::chrX:154149497..154149508,+p@chrX:154149497..154149508
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0022410circadian sleep/wake cycle process0.00953111277264864
GO:0042749regulation of circadian sleep/wake cycle0.00953111277264864
GO:0045187regulation of circadian sleep/wake cycle, sleep0.00953111277264864
GO:0050802circadian sleep/wake cycle, sleep0.00953111277264864
GO:0042745circadian sleep/wake cycle0.00953111277264864
GO:0042752regulation of circadian rhythm0.00953111277264864
GO:0048512circadian behavior0.01191193276837
GO:0030431sleep0.01191193276837
GO:0007622rhythmic behavior0.0138577408101196
GO:0046457prostanoid biosynthetic process0.0138577408101196
GO:0001516prostaglandin biosynthetic process0.0138577408101196
GO:0006693prostaglandin metabolic process0.0190465645434848
GO:0006692prostanoid metabolic process0.0190465645434848
GO:0046456icosanoid biosynthetic process0.0326217439820534
GO:0007623circadian rhythm0.034024540262353
GO:0006690icosanoid metabolic process0.034024540262353
GO:0003018vascular process in circulatory system0.034024540262353
GO:0035150regulation of tube size0.034024540262353
GO:0050880regulation of blood vessel size0.034024540262353



Relative expression of the co-expression cluster over median <br>Analyst:


"{{{coexpression_dpi_cluster_scores_median}}}" is not a number.

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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