Personal tools

MCL coexpression mm9:215: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{MCL_coexpression_mm9|gostat_on_MCL_coexpression=GO:0004631;phosphomevalonate kinase activity;0.0087108968388758;68603!GO:0008610;lipid biosynthetic process;0.013121219549577...")
 
No edit summary
Line 1: Line 1:
{{MCL_coexpression_mm9|gostat_on_MCL_coexpression=GO:0004631;phosphomevalonate kinase activity;0.0087108968388758;68603!GO:0008610;lipid biosynthetic process;0.0131212195495776;20249,68603!GO:0004768;stearoyl-CoA 9-desaturase activity;0.0145149798583661;20249!GO:0016717;oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water;0.0195909283577094;20249!GO:0044255;cellular lipid metabolic process;0.0239416704430533;20249,68603!GO:0006629;lipid metabolic process;0.0263269425472135;20249,68603!GO:0006695;cholesterol biosynthetic process;0.0273456168870923;68603!GO:0016776;phosphotransferase activity, phosphate group as acceptor;0.0280254074058527;68603!GO:0016126;sterol biosynthetic process;0.0280254074058527;68603!GO:0008203;cholesterol metabolic process;0.0395868911659179;68603!GO:0009058;biosynthetic process;0.0395868911659179;20249,68603!GO:0006694;steroid biosynthetic process;0.0395868911659179;68603!GO:0006633;fatty acid biosynthetic process;0.0395868911659179;20249!GO:0016125;sterol metabolic process;0.0395868911659179;68603!GO:0046394;carboxylic acid biosynthetic process;0.0395868911659179;20249!GO:0016053;organic acid biosynthetic process;0.0395868911659179;20249!GO:0042579;microbody;0.042383932248497;68603!GO:0005777;peroxisome;0.042383932248497;68603!}}
{{MCL_coexpression_mm9
|coexpression_dpi_cluster_scores_mean=-0.0246793507754818,-0.0372130526644202,-0.0352990204492905,-0.0430772561758872,-0.0398314536272184,-0.0431489501430277,-0.0400227710098209,-0.0563647524912443,-0.0594828247688612,-0.0609776034385771,-0.0623661118465862,-0.0608013459445264,-0.0614608795990202,-0.0593183162451864,0.00356783086374227,-0.0184940714363333,-0.034560181397581,0.105688640923288,0.109131731433838,0.0633527956857129,0.222626987185589,-0.0489251648104719,-0.0479303364424072,0.0811683781124307,0.11516673313359,-0.0340605331630874,-0.0401847700312384,-0.0423190916799016,0.00348740814275866,-0.036199106576248,-0.0403101138230336,0.0344108723165082,0.0871895760937953,-0.00373332490442932,-0.043220480713225,-0.0445486417403811,-0.0413675025001787,-0.043151311553617,-0.0497071581215302,-0.0517661484983058,-0.0460833805420637,-0.0416826192638259,-0.0524682406309665,0.0406526447446979,0.0202041488996246,0.0716609922318339,0.0494873500748074,0.323783509102441,0.249096480167673,0.246028854493824,0.400417357403107,0.252850254877689,0.215915428592471,-0.0494908083303262,-0.0516962699101323,0.0901226235094287,-0.0230617826589857,0.0705897854038578,-0.0357868209389287,-0.0414909436447482,-0.0307719966904418,0.148143911108536,0.216442092192123,-0.0410468106408132,-0.0375896155210942,-0.0290683762569395,0.045764716593973,0.100479816539891,-0.0372853051948707,-0.0331917985682271,-0.0420060760040262,0.119769859512558,0.113006240984625,-0.045350768750621,-0.0357362689943565,0.00224651826832209,0.208168939177951,0.187658834620622,0.252891199918882,-0.0221430442015308,-0.0025587540393641,-0.0185926703600693,0.220399875092885,0.17824903947067,0.226751232958055,0.0749164673666902,0.104586730072486,0.0125976527799545,0.0810889664454482,0.0721222333990157,0.0253300597748681,0.780486374311378,1.33631656715695,1.18170621037351,1.35407140071074,1.18732589263134,0.447339435885726,0.08119066399831,0.0976833155059902,0.0862017735707845,0.0158971617758599,0.0187036945432359,-0.0311227692562634,-0.0543602907099419,0.0706728140235873,0.0452763682594791,0.0399468042998441,0.637261427701017,0.2059505523303,0.451673636797986,-0.021056426151667,0.0203754183797459,0.0497092005861031,0.0336181871959357,-0.00262641584609657,0.785739883039169,0.017494535786573,0.974318306341456,0.0871197341133144,0.0206959807406785,0.141593132761982,0.158303644685909,0.061470288015239,0.0753840709245077,0.13189684286053,0.0896197732473526,-0.0610793931019353,-0.055884549864499,-0.0600351379955732,0.175623079288132,0.0794289536628708,0.014069435026401,0.0742386451006566,0.0607619249837154,0.17425331417638,0.10913359997686,-0.0287625628123036,0.274121142966638,0.184731989316294,1.28390751414485,-0.0435309663490098,-0.047046768740652,-0.0397790953474262,-0.0238391801741903,-0.0393039461114318,-0.0405175802710196,-0.0365511890718573,0.689248272787299,-0.0207294294346401,-0.0326022234441016,-0.0448225984945208,-0.0350404851633622,-0.023961586655038,-0.00108720158308327,-0.0123782186847441,-0.0331794200896204,-0.0564638415754529,-0.0602180954103746,-0.0657148705731812,-0.0521542139176098,-0.0479204728763158,-0.0540300578047933,-0.0494370793904938,-0.0518109086004516,-0.0540991415718336,-0.036526930706644,-0.0258905306977967,-0.0411513617841453,-0.0189535870259974,0.0218015723080332,0.0670667739895093,0.0175736784293644,0.392931827770199,0.148381801061035,0.0798945349626347,0.0269674707715915,0.0595262567764448,0.576452959656626,-0.0402689094118055,-0.0380178344228108,-0.0271324865340447,-0.00636702740777165,0.0145114553761709,0.0191142015369721,0.0241589231537119,-0.0218375751154853,-0.0249931008928851,-0.0177157023812877,-0.0140200499713793,0.0687923876368742,0.0257658215479447,0.0356427337209349,-0.0404622321570596,-0.0381712764728767,-0.0603957669889737,-0.0409567822385603,-0.0361912942646789,-0.0390146896390471,-0.0195834633338145,0.069011662558269,0.2582830181423,0.185718167314657,0.9305422493213,-0.0040979272474224,0.0281870428234578,0.03675997027619,0.0691776138748491,0.0975599612933148,0.110628434068845,0.228341669657299,0.0147006699910733,-0.000506974508391531,0.0524479742286035,0.0330681837585721,0.00827519537840112,0.218569905943651,0.927019495861536,0.679273860761554,0.387488333407669,-0.0409816319227484,-0.0476657615191936,-0.0385703539500633,-0.0528437455903213,0.0812378410240291,0.224179384708815,0.189507477250825,0.110698647967688,0.144347638655913,0.204853220429744,0.526774668546612,0.697885983689836,0.553314411431017,-0.0494318045614235,-0.0496783899307269,1.49947136877062,0.839896187315434,0.17833125487072,0.175937191857709,0.104691051133538,0.41200769880143,0.0165768928726389,-0.0157726062304222,-0.0209798119680632,-0.0173429821374733,0.0235915944470365,0.0339482828896403,0.0192265480232501,0.0325719294019522,0.00492207422899885,0.125634222523335,0.432515479144383,0.0162290249436738,-0.0108496318119212,0.0764211631532131,0.165565167405379,-0.0493998163583328,-0.0246523201761146,0.008813296058546,0.00840126604627966,0.0247424814245124,-0.00485867590500243,-0.013270263662981,-0.00591100366091796,0.131530623977141,0.129608402506621,0.161718628665106,0.0119640514881596,-0.0515084031635698,-0.0428102755273161,-0.0515086507476805,-0.0395088020748039,-0.0209653353511787,-0.0187893829864401,0.014795442452067,-0.02172101281322,-0.00960674586521627,0.104002353602689,0.40827858756237,0.150849436780309,0.207237586878191,0.288775366017173,0.286793827780586,0.0188347535879697,0.258634883053382,0.0484562647356972,-0.0391506938752224,-0.0262912054265864,0.00294193087141727,0.0395740221568622,0.0531659541004659,-0.0588589068945553,-0.0601132372898342,-0.0577262022761315,0.162361916212112,-0.0411491117191564,-0.0347973067790339,-0.0174685910689425,-0.00344348462027927,0.0169385862084018,0.0267543324409425,0.0327134118635879,0.189303569584828,0.0858791398820058,0.365935990454564,-0.00217387629594098,-0.0399246637483922,-0.0140830391309236,0.00838747229584267,0.0300264814296545,0.0280671920115233,-0.0403379229787601,-0.00450627357057617,-0.0224861255238841,-0.0118530269948747,0.150625355156192,0.247050949358539,-0.0500767881090376,-0.0391027188993247,-0.0418815413416972,-0.0380688672186259,0.0261463167380978,-0.0286878692774093,-0.0282109496534,0.018068761818252,-0.0202533857370276,-0.01158211547767,-0.00497995435205661,0.0689834554356476,0.0688913352408489,0.0685657935662734,0.0167844710528301,-0.0122364654163268,0.00270985883327541,0.190179507241411,0.0579717704332863,0.0796774177064309,0.117969489563655,0.0942057447636648,0.0796908528226446,0.0607656551554668,0.0658130435617642,0.0638378930679759,0.0577755369074664,0.0545099145548012,0.0283844513943632,0.055890612125142,0.0519257104546833,0.011326085763082,-0.025489978225941,-0.0469785805518513,-0.0312142931481763,0.00166919563853095,-0.00400640424782966,0.0771194880789413,0.146545914813856,0.141962366501539,0.117695589705207,0.158747250024667,0.139088784318088,0.141202486423666,0.137255229583597,0.131276540157285,0.138692842322968,0.125166743838096,0.136299225136728,0.135231094830299,0.136774554145945,0.134933953699596,0.158149528836564,0.166980881717098,0.161262284184309,0.141629602110936,0.139500939534628,0.144167264081997,0.155900775971727,0.159033982368007,0.149081341847029,0.168421645861789,0.137685282120731,0.134144518208686,0.158885505905382,0.134224790091617,0.0987564857693147,0.0786585877994137,0.13877783447388,0.189697502286341,0.184716253694001,0.132918289056039,0.148710393858097
|gostat_on_MCL_coexpression=GO:0004631;phosphomevalonate kinase activity;0.0087108968388758;68603!GO:0008610;lipid biosynthetic process;0.0131212195495776;20249,68603!GO:0004768;stearoyl-CoA 9-desaturase activity;0.0145149798583661;20249!GO:0016717;oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water;0.0195909283577094;20249!GO:0044255;cellular lipid metabolic process;0.0239416704430533;20249,68603!GO:0006629;lipid metabolic process;0.0263269425472135;20249,68603!GO:0006695;cholesterol biosynthetic process;0.0273456168870923;68603!GO:0016776;phosphotransferase activity, phosphate group as acceptor;0.0280254074058527;68603!GO:0016126;sterol biosynthetic process;0.0280254074058527;68603!GO:0008203;cholesterol metabolic process;0.0395868911659179;68603!GO:0009058;biosynthetic process;0.0395868911659179;20249,68603!GO:0006694;steroid biosynthetic process;0.0395868911659179;68603!GO:0006633;fatty acid biosynthetic process;0.0395868911659179;20249!GO:0016125;sterol metabolic process;0.0395868911659179;68603!GO:0046394;carboxylic acid biosynthetic process;0.0395868911659179;20249!GO:0016053;organic acid biosynthetic process;0.0395868911659179;20249!GO:0042579;microbody;0.042383932248497;68603!GO:0005777;peroxisome;0.042383932248497;68603!
}}

Revision as of 11:05, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr19:44469722..44469735,-p@chr19:44469722..44469735
-
Mm9::chr19:44470228..44470248,-p@chr19:44470228..44470248
-
Mm9::chr19:44470392..44470403,-p@chr19:44470392..44470403
-
Mm9::chr19:44470429..44470439,-p@chr19:44470429..44470439
-
Mm9::chr19:44470488..44470500,-p@chr19:44470488..44470500
-
Mm9::chr19:44470516..44470532,-p@chr19:44470516..44470532
-
Mm9::chr19:44470585..44470601,-p@chr19:44470585..44470601
-
Mm9::chr19:44470609..44470621,-p@chr19:44470609..44470621
-
Mm9::chr19:44470630..44470639,-p@chr19:44470630..44470639
-
Mm9::chr19:44470683..44470703,-p@chr19:44470683..44470703
-
Mm9::chr19:44470931..44470949,-p@chr19:44470931..44470949
-
Mm9::chr19:44471001..44471014,-p@chr19:44471001..44471014
-
Mm9::chr19:44471115..44471128,-p@chr19:44471115..44471128
-
Mm9::chr19:44471178..44471193,-p@chr19:44471178..44471193
-
Mm9::chr19:44471208..44471223,-p@chr19:44471208..44471223
-
Mm9::chr19:44471232..44471241,-p@chr19:44471232..44471241
-
Mm9::chr19:44471260..44471273,-p@chr19:44471260..44471273
-
Mm9::chr19:44471309..44471332,-p@chr19:44471309..44471332
-
Mm9::chr19:44471500..44471518,-p@chr19:44471500..44471518
-
Mm9::chr19:44471534..44471545,-p@chr19:44471534..44471545
-
Mm9::chr19:44471631..44471652,+p@chr19:44471631..44471652
+
Mm9::chr19:44471667..44471677,-p@chr19:44471667..44471677
-
Mm9::chr19:44471748..44471759,-p@chr19:44471748..44471759
-
Mm9::chr19:44471819..44471862,-p@chr19:44471819..44471862
-
Mm9::chr19:44471956..44471977,-p@chr19:44471956..44471977
-
Mm9::chr19:44472053..44472082,-p@chr19:44472053..44472082
-
Mm9::chr19:44472296..44472324,-p@chr19:44472296..44472324
-
Mm9::chr19:44472391..44472437,-p@chr19:44472391..44472437
-
Mm9::chr19:44472470..44472502,-p@chr19:44472470..44472502
-
Mm9::chr19:44474676..44474725,-p@chr19:44474676..44474725
-
Mm9::chr19:44474762..44474798,-p@chr19:44474762..44474798
-
Mm9::chr19:44477731..44477749,-p@chr19:44477731..44477749
-
Mm9::chr19:44477767..44477789,-p@chr19:44477767..44477789
-
Mm9::chr19:44481092..44481122,+p@chr19:44481092..44481122
+
Mm9::chr19:44481121..44481142,-p@chr19:44481121..44481142
-
Mm9::chr19:44481173..44481221,+p@chr19:44481173..44481221
+
Mm9::chr19:44481208..44481258,-p@chr19:44481208..44481258
-
Mm9::chr19:44482043..44482059,-p1@Scd1
Mm9::chr19:44482100..44482113,-p2@Scd1
Mm9::chr3:89263108..89263136,+p1@Pmvk
Mm9::chr5:114605480..114605524,+p@chr5:114605480..114605524
+
Mm9::chr7:104566021..104566049,-p1@Thrsp


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0004631phosphomevalonate kinase activity0.0087108968388758
GO:0008610lipid biosynthetic process0.0131212195495776
GO:0004768stearoyl-CoA 9-desaturase activity0.0145149798583661
GO:0016717oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water0.0195909283577094
GO:0044255cellular lipid metabolic process0.0239416704430533
GO:0006629lipid metabolic process0.0263269425472135
GO:0006695cholesterol biosynthetic process0.0273456168870923
GO:0016776phosphotransferase activity, phosphate group as acceptor0.0280254074058527
GO:0016126sterol biosynthetic process0.0280254074058527
GO:0008203cholesterol metabolic process0.0395868911659179
GO:0009058biosynthetic process0.0395868911659179
GO:0006694steroid biosynthetic process0.0395868911659179
GO:0006633fatty acid biosynthetic process0.0395868911659179
GO:0016125sterol metabolic process0.0395868911659179
GO:0046394carboxylic acid biosynthetic process0.0395868911659179
GO:0016053organic acid biosynthetic process0.0395868911659179
GO:0042579microbody0.042383932248497
GO:0005777peroxisome0.042383932248497



Relative expression of the co-expression cluster over median <br>Analyst:


"{{{coexpression_dpi_cluster_scores_median}}}" is not a number.

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:215&oldid=2145729"