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{{Coexpression_clusters
{{Coexpression_clusters
|coexpression_dpi_cluster_scores_median=0.489672444479812,0.730740543033678,1.00394767518983,0.6992245942616,1.14494364401526,0.690742887182785,0.548143487673058,0.649655770071445,0.96398676021349,0,0,0,0.101667003219354,0.173166947752732,0.299766997383943,0.223320720221072,0.204850754147253,0.238123940398271,0.295757399657426,0.0504265701716883,0.148603081231402,0.118415106013485,0,0.055712496781182,0.0513619522818629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.536314545918477,0,0.141006687969447,0.418342967702054,0.17647845120947,0.448651949056245,0,0.172204315337917,0,0,0,0.12301741567642,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0185736976508778,0,0,0,0,0,0,0,0,0.600082900872663,0.431821268396906,0.164927719738382,0.331902125252425,0.603226976505188,0.259963295066464,0,0.0957506546513297,0.117672595682223,0.0548851394659095,0.122845985799448,0.0612101670326939,0.197604689528463,0.0914282698219536,0.319466529424201,0,0.434190760503395,0.0482220752390542,0,0.0570765567424092,0.0806820944291313,0.0728591034013259,0.15023531915021,0,0,0.450298806609889,0.499116961684888,0,0.0511982733942606,0,0,0,0.0607877333709642,0.0887965527720659,0,0.154458903240703,0.153468449462275,0.113973783953524,0.284366641823261,0.0995565284045724,0.241662864220876,0.0677314085379025,0.294899044411568,0.21117225647022,0.250866223248775,0.27584635132809,0.233000982852579,0.280298056200157,0.152708762580115,0,0,0,0,0,0,0,0,0,0,0,0,0.65096211008283,0.663644153299648,0,0,0,0,0,0,0,0,0,0,0,0.205262792334875,0.59551542600336,0,0,0,0,0,0.0687674306079092,0,0,0,0,0,0,0,0,0.0699073913330217,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.433085374649978,0,0,0,0.046155979559586,0,0.0863651195885523,0,1.2760669059841,0.266067629561646,0.512919284169062,0.488571688783462,0.0994069197460863,0,0.102578507776567,0.890940670032984,1.08352794470175,0.260843920469556,0.0612285549813805,0.637853145395829,0.253326341486756,0,0,0,0,0,0,0.170041493096301,0.33215948426107,0,0.133547865262647,0.179034531391667,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414135586903633,0.510696905781533,0.345676894712923,0.0410282292166428,0.0713034174053426,0,0,0.204633286556638,0.515088629055027,0.308506940524756,0.221212197891035,0.13632043160929,0.328274990725751,0.24856719510669,0.128122390065496,0,0,0,0,0,0.114741150775265,0.673490348300097,0.140358976325063,0.380808071780009,0.908013040231273,0.403998820816319,0.856875420656654,0.395183177140817,0.298625463110644,0.350816122023714,0.355955084463836,0.407860349498638,0.455910782727601,0,0,0,0.180578340637668,0.35691232378723,0.58911409628894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099145253918139,0.0616014322868925,0.122339886766207,0.0813768443325499,0,0,0,0,0.416114259418732,0.293214425022443,0.116640027413114,0.164504839448406,0.0560798888033103,0.229779600476274,0.317282052653511,0.11313871772087,0.185879774344441,0,0,0,0,1.16764537730886,0.522151340782553,0.229691380353826,0.116618893451534,0.185345510730693,0.271826044133587,0.192001960980818,0,0,0.21292204628454,0.368177387500519,0.535122200581927,0.928715066143277,0.356563703207454,0,0.235399611595538,0.42279039268439,0.274774593520297,0.17668677081045,0.412477887232674,0,0.295625913345657,0.205383981774723,0.156564511884002,0.348012483037286,0.606338159292723,0.513239225317154,0.190714085371158,0.221006873012398,0.364617148609597,0.726969191472713,0.771596216327213,0.0802332713627146,0.209420369907932,0.194067664482614,0.331890866951329,0.307714398364783,0,0.314769276471791,0.708148045946217,0.448133487681942,0,0.130312767515111,0,0,0,0.0390744040629657,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.378526111518346,0,0,0,0,0,0,0,0.0571597974145305,0,0,0,0.542723112631594,0.191050583413854,0,0,0,0,0,0,0,0.707013116497679,0,0,0,0.0562214130631495,0,0,0,0.389165933845057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.411146962644548,0,0,0,0,0,0.120507194438142,0,0,0,0,0,0,0,0,0,0,0,0,0,0.299999916441319,0.232401536920605,0.207103666835013,0,0,0,0.0283276594447047,0.820729619464913,0.0914082188667263,0,0,0,0.41133978391229,0.344374029099016,0,0.119233744361939,0,0,0,0,0,0,0,0,0,0,0,0.668943775445023,0.37468516032638,0,0,0,0.294442011890266,0,0.279649371901492,0,0,0.0266602233572113,0,0.016743808154486,0.61092963606296,0,0,0,0,0,0,0,0,0,0,0.110236269607548,0,0.105104912336182,0,0,0,0.403498998871582,0.876403953614039,0.234991060098501,0.698064522612454,1.21048188779876,0.478356239969586,0.214287000456718,0.499934299143301,0,0,0,0,0,0,0,0.104625985571293,0,0,0,0,0,0.0128064294623087,0,0.0635628004819691,0.0533982307173128,0,0,0,0.541972289861403,0.882007385791,0,1.29483356477768,0.726002029283562,1.07088175345309,0,0,0.305851622964251,0.046616925903038,0,0,0.14234217584783,0.101906882599192,0,0,0.084066558699748,0.0634100406668813,0.150522826464445,0.174979787616842,0,0,0,0.319737900306467,0.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|full_id=C339_Mesenchymal_heart_leiomyoma_Adipocyte_Smooth_skeletal_tongue
|full_id=C339_Mesenchymal_heart_leiomyoma_Adipocyte_Smooth_skeletal_tongue
|id=C339
|id=C339

Revision as of 16:18, 12 September 2012


Full id: C339_Mesenchymal_heart_leiomyoma_Adipocyte_Smooth_skeletal_tongue



Phase1 CAGE Peaks

Hg19::chr19:36245601..36245615,-p3@CU679244
Hg19::chr19:36245605..36245616,+p@chr19:36245605..36245616
+
Hg19::chr19:36245653..36245670,-p4@CU679244
Hg19::chr19:36245680..36245700,+p@chr19:36245680..36245700
+
Hg19::chr19:36245682..36245706,-p1@CU679244
Hg19::chr19:36245714..36245739,+p@chr19:36245714..36245739
+
Hg19::chr19:36245719..36245738,-p2@CU679244
Hg19::chr19:36245740..36245750,+p@chr19:36245740..36245750
+
Hg19::chr19:36245757..36245768,+p@chr19:36245757..36245768
+
Hg19::chr19:36245789..36245798,-p20@HSPB6
Hg19::chr19:36245828..36245846,-p4@HSPB6
Hg19::chr19:36245853..36245881,-p5@HSPB6
Hg19::chr19:36245884..36245902,-p8@HSPB6
Hg19::chr19:36245935..36245985,-p3@HSPB6
Hg19::chr19:36245962..36245977,+p@chr19:36245962..36245977
+
Hg19::chr19:36245984..36246010,+p@chr19:36245984..36246010
+
Hg19::chr19:36245988..36246002,-p15@HSPB6
Hg19::chr19:36246007..36246015,-p19@HSPB6
Hg19::chr19:36246020..36246050,+p@chr19:36246020..36246050
+
Hg19::chr19:36246042..36246059,-p9@HSPB6
Hg19::chr19:36246080..36246107,+p@chr19:36246080..36246107
+
Hg19::chr19:36246086..36246335,-p2@HSPB6
Hg19::chr19:36246113..36246265,+p@chr19:36246113..36246265
+
Hg19::chr19:36246354..36246383,-p6@HSPB6
Hg19::chr19:36246384..36246401,-p7@HSPB6
Hg19::chr19:36246404..36246415,-p14@HSPB6
Hg19::chr19:36246439..36246461,+p@chr19:36246439..36246461
+
Hg19::chr19:36246480..36246491,-p13@HSPB6
Hg19::chr19:36246494..36246501,-p21@HSPB6
Hg19::chr19:36246502..36246515,-p11@HSPB6
Hg19::chr19:36246564..36246573,-p24@HSPB6
Hg19::chr19:36246722..36246741,-p16@HSPB6
Hg19::chr19:36246747..36246780,-p10@HSPB6
Hg19::chr19:36247921..36247937,-p1@HSPB6


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
dermomyotome8.34e-2170
muscle tissue8.81e-2163
musculature8.81e-2163
musculature of body8.81e-2163
organism subdivision1.08e-20365
somite2.29e-2083
paraxial mesoderm2.29e-2083
presomitic mesoderm2.29e-2083
presumptive segmental plate2.29e-2083
trunk paraxial mesoderm2.29e-2083
presumptive paraxial mesoderm2.29e-2083
skeletal muscle tissue5.71e-2061
striated muscle tissue5.71e-2061
myotome5.71e-2061
trunk mesenchyme1.46e-17143
multi-tissue structure1.32e-16347
cell layer2.17e-16312
epithelium5.47e-16309
multilaminar epithelium8.94e-1682
multi-cellular organism9.27e-15659
splanchnic layer of lateral plate mesoderm4.25e-1484
adult organism5.70e-14115
anatomical cluster4.27e-13286
anatomical conduit9.22e-13241
tube4.35e-12194
trunk4.55e-12216
vasculature5.53e-1179
vascular system5.53e-1179
epithelial tube6.12e-11118
unilaminar epithelium3.26e-10138
anatomical system3.40e-10625
circulatory system4.02e-10113
anatomical group5.93e-10626
blood vessel8.96e-1060
epithelial tube open at both ends8.96e-1060
blood vasculature8.96e-1060
vascular cord8.96e-1060
primary circulatory organ1.42e-0927
vessel4.78e-0969
cardiovascular system5.32e-09110
tissue1.27e-08787
artery2.79e-0842
arterial blood vessel2.79e-0842
arterial system2.79e-0842
heart6.30e-0824
primitive heart tube6.30e-0824
primary heart field6.30e-0824
anterior lateral plate mesoderm6.30e-0824
heart tube6.30e-0824
heart primordium6.30e-0824
cardiac mesoderm6.30e-0824
cardiogenic plate6.30e-0824
heart rudiment6.30e-0824
embryo7.53e-08612
compound organ7.82e-0869
mesenchyme8.15e-08238
entire embryonic mesenchyme8.15e-08238
adipose tissue8.61e-0814
systemic artery9.96e-0833
systemic arterial system9.96e-0833
embryonic structure2.01e-07605
developing anatomical structure2.01e-07605
germ layer3.29e-07604
embryonic tissue3.29e-07604
presumptive structure3.29e-07604
epiblast (generic)3.29e-07604


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

This analysis result is provided for C0 - C305 clusters.

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