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MacroAPE 1083:TGACCAA,motif340: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;2.566;2.566;2.566;2558.302!2;12.83;2.566;2055.366;495.238!3;2314.532;246.336;2.566;2.566!4;2.566;2186.232;374.636;2.566!5;377.202;2183.666;2...")
 
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111C9;0.909132!10788-110H5;0.545528!10792-110H9;0.817133!10765-110E9;0.538828!10829-111D1;0.807991!10830-111D2;0.278185!10831-111D3;0.93226!10832-111D4;0.846041!10833-111D5;0.479738!10764-110E8;0.744568!10770-110F5;0.952262!10399-106A3;0.257141!10400-106A4;0.972653!10405-106A9;0.954584!10834-111D6;0.968028!10835-111D7;0.836586!10836-111D8;0.322574!10837-111D9;0.891974!10699-109G6;0.779146!10802-111A1;0.897261!10796-110I4;0.552077!10010-101C1;0.0910146!10810-111A9;0.465767!10421-106C7;0.582079!10708-109H6;0.816497!12235-129G3;0.242101!12236-129G4;0.685791!12237-129G5;0.227066!10167-103B5;0.420301!10151-102I7;0.900031!10428-106D5;0.987902!10795-110I3;0.0492906!10805-111A4;0.627797!10052-101G7;0.376913!10189-103D9;0.653089!10589-108D4;0.642163!10425-106D2;0.204374!10427-106D4;0.756812!10702-109G9;0.889493!10432-106D9;0.752051!10496-107C1;0.0974555!10718-109I7;0.116224!10011-101C2;0.710363!10053-101G8;0.699061!10686-109F2;0.954325!10084-102B3;0.0782237!10012-101C3;0.866812!10085-102B4;0.945139!10482-107A5;0.663855!10419-106C5;0.139201!10080-102A8;0.0804154!10760-110E4;0.374121!10709-109H7;0.5178!10710-109H8;0.046128!10703-109H1;0.343286!10719-109I8;0.226823!10642-109A3;0.845263!10177-103C6;0.112752!10164-103B2;0.571142!10173-103C2;0.824541!10166-103B4;0.177424!10083-102B2;0.244334!10188-103D8;0.232437!10552-107I3;0.99223!10553-107I4;0.282933!10013-101C4;0.581481!10536-107G5;0.662196!10618-108G6;0.169881!10423-106C9;0.369989!10785-110H2;0.0895771!12238-129G6;0.607036!12239-129G7;0.830253!12240-129G8;0.38746!10416-106C2;0.9585!10801-110I9;0.36418!10766-110F1;0.71375!10824-111C5;0.78985!10825-111C6;0.7816!10826-111C7;0.753149!10454-106G4;0.756956!10409-106B4;0.988101!10638-108I8;0.765337!10636-108I6;0.28266!10513-107D9;0.564867!10420-106C6;0.218559!10082-102B1;0.292776!10014-101C5;0.277074!10070-101I7;0.44196!10452-106G2;0.411861!10453-106G3;0.920778!10449-106F8;0.657476!10042-101F6;0.663341!10069-101I6;0.979974!10193-103E4;0.456369!10631-108I1;0.849931!10438-106E6;0.859766!10488-107B2;0.129082!10196-103E7;0.358109!10071-101I8;0.952507!10071-101I8;0.806183!10041-101F5;0.736168!10451-106G1;0.852339!10450-106F9;0.334364!10604-108F1;0.328938!10605-108F2;0.0105735!10606-108F3;0.0365221!10603-108E9;0.0135716!10497-107C2;0.0514209!10448-106F7;0.376781!10643-109A4;0.403216!10426-106D3;0.258316!10431-106D8;0.133825!10197-103E8;0.922065!10443-106F2;0.647046!10815-111B5;0.476288!10816-111B6;0.970064!10817-111B7;0.912309!10015-101C6;0.935111!10410-106B5;0.877491!10054-101G9;0.102902!10758-110E2;0.980335!10711-109H9;0.110585!10040-101F4;0.225146!10470-106I2;0.972055!10415-106C1;0.157266!10198-103E9;0.0112294!10614-108G2;0.819896!10612-108F9;0.634977!10549-107H9;0.0458049!10615-108G3;0.32603!10487-107B1;0.164483!10433-106E1;0.198518!10688-109F4;0.38552!10444-106F3;0.286148!10444-106F3;0.827934!10485-107A8;0.900887!10413-106B8;0.206844!10175-103C4;0.219668!10161-103A8;0.798394!12131-128D7;0.872755!10624-108H3;0.465634!10712-109I1;0.615478!10205-103F7;0.688177!10206-103F8;0.623108!10207-103F9;0.790202!10050-101G5;0.475161!10051-101G6;0.885132!10016-101C7;0.685762!10046-101G1;0.79629!10778-110G4;0.795109!10633-108I3;0.848349!10818-111B8;0.117262!10819-111B9;0.226557!10820-111C1;0.245776!10484-107A7;0.240093!10808-111A7;0.135315!10169-103B7;0.529792!10153-102I9;0.955455!13425-144D5;0.949162!13433-144E4;0.623647!13437-144E8;0.425199!11904-125F5;0.595331!11905-125F6;0.611979!10039-101F3;0.97514!10791-110H8;0.902354!10017-101C8;0.811846!10045-101F9;0.62586!10509-107D5;0.525186!10839-111E2;0.0216695!10692-109F8;0.54858!10079-102A7;0.506498!10078-102A6;0.766167!10721-110A1;0.853373!10569-108B2;0.537859!10570-108B3;0.590091!10571-108B4;0.585288!10647-109A8;0.538979!10752-110D5;0.232653!10782-110G8;0.836949!10726-110A6;0.560578!10018-101C9;0.114726!10086-102B5;0.916338!10182-103D2;0.756006!10165-103B3;0.485014!10499-107C4;0.651811!10408-106B3;0.371986!10019-101D1;0.00466472!10068-101I5;0.738876!10075-102A3;0.591865!10077-102A5;0.92538!10727-110A7;0.835525!10775-110G1;0.83392!10412-106B7;0.830884!12231-129F8;0.471837!12232-129F9;0.0626863!12233-129G1;0.507788!12234-129G2;0.355419!10414-106B9;0.359896!10170-103B8;0.048857!10183-103D3;0.866574!10150-102I6;0.942675!10174-103C3;0.93019!10155-103A2;0.757625!10038-101F2;0.780212!10838-111E1;0.855784!10759-110E3;0.0430583!10514-107E1;0.358165!10465-106H6;0.588658!10691-109F7;0.72436!10843-111E6;0.113444!10844-111E7;0.139268!11747-123G1;0.442288!11748-123G2;0.355793!11749-123G3;0.763129!11750-123G4;0.334816!11751-123G5;0.772548!11840-124H4;0.754781!11752-123G6;0.785736!11753-123G7;0.834792!11754-123G8;0.295014!11755-123G9;0.296304!11756-123H1;0.163588!11833-124G6;0.470127!11760-123H5;0.42023!11836-124G9;0.42127!11758-123H3;0.423851!11835-124G8;0.238435!11762-123H7;0.739644!11838-124H2;0.175424!11757-123H2;0.820496!11759-123H4;0.483052!11761-123H6;0.263465!11842-124H6;0.29145!11837-124H1;0.875911!10568-108B1;0.589616!13230-141I8;0.495869!13231-141I9;0.41213!10696-109G3;0.599196!10493-107B7;0.683787!10494-107B8;0.0882776!10850-111F4;0.550156!10851-111F5;0.747381!10852-111F6;0.577529!10853-111F7;0.339369!10854-111F8;0.791337!10855-111F9;0.241333!10856-111G1;0.424901!10847-111F1;0.939089!10846-111E9;0.576717!10848-111F2;0.5159!10845-111E8;0.488244!10857-111G2;0.847942!10858-111G3;0.460395!10156-103A3;0.990431!11901-125F2;0.981482!11902-125F3;0.812359!11903-125F4;0.852718!10689-109F5;0.998971!10648-109A9;0.383434!10784-110H1;0.556509!10744-110C6;0.0437308!10772-110F7;0.8947!10474-106I6;0.810864!10600-108E6;0.36757!10684-109E9;0.389817!12226-129F3;0.27462!12227-129F4;0.659095!10508-107D4;0.267391!10539-107G8;0.513004!10607-108F4;0.99495!10555-107I6;0.607916!10774-110F9;0.95808!10637-108I7;0.871012!10663-109C6;0.246274!10728-110A8;0.813668!10729-110A9;0.0996796!10430-106D7;0.760778!10730-110B1;0.848382!10813-111B3;0.0554944!10812-111B2;0.901137!10037-101F1;0.900046!10172-103C1;0.920641!10163-103B1;0.996019!10076-102A4;0.798308!10073-102A1;0.884567!10036-101E9;0.617669!10195-103E6;0.95232!10277-104E7;0.945207!10434-106E2;0.276522!10550-107I1;0.431506!10545-107H5;0.856954!10544-107H4;0.285397!10704-109H2;0.598645!10510-107D6;0.934743!10558-107I9;0.0133723!10020-101D2;0.343338!10732-110B3;0.701244!10049-101G4;0.527896!10698-109G5;0.627534!10437-106E5;0.0774471!10417-106C3;0.260945!10035-101E8;0.107305!10171-103B9;0.948923!10157-103A4;0.966521!10034-101E7;0.913551!10072-101I9;0.891055!10199-103F1;0.714293!10200-103F2;0.374052!10697-109G4;0.978951!10723-110A3;0.998408!10179-103C8;0.125597!10160-103A7;0.750305!10180-103C9;0.68992!10162-103A9;0.654244!10021-101D3;0.546149!10840-111E3;0.383532!10706-109H4;0.825672!10033-101E6;0.0288768!10032-101E5;0.545062!10490-107B4;0.867381!10439-106E7;0.271484!10022-101D4;0.0203402!10176-103C5;0.396276!10469-106I1;0.953576!10067-101I4;0.0387441!10411-106B6;0.687234!10471-106I3;0.109073!10030-101E3;0.258888!10475-106I7;0.914484!10787-110H4;0.430718!10477-106I9;0.256088!10695-109G2;0.216638!11771-123I7;0.229766!11772-123I8;0.851022!11773-123I9;0.854298!10093-102C3;0.675166!10442-106F1;0.401713!10442-106F1;0.760051!10201-103F3;0.610995!10639-108I9;0.718504!11843-124H7;0.803059!11841-124H5;0.13595!10693-109F9;0.439793!10436-106E4;0.725501!10483-107A6;0.3932!10282-104F3;0.188444!10023-101D5;0.85802!10066-101I3;0.874319!10065-101I2;0.614809!10800-110I8;0.698297!10610-108F7;0.761664!10841-111E4;0.0016603!10541-107H1;0.5946!10842-111E5;0.329958!10562-108A4;0.371414!10024-101D6;0.059403!10064-101I1;0.300537!10609-108F6;0.853796!10048-101G3;0.444187!10781-110G7;0.95873!10181-103D1;0.0115278!10159-103A6;0.61189!10056-101H2;0.735307!10737-110B8;0.898021!10025-101D7;0.926021!10044-101F8;0.649547!10424-106D1;0.752063!10463-106H4;0.507552!10616-108G4;0.144322!10486-107A9;0.15432!10062-101H8;0.239002!10202-103F4;0.764016!10158-103A5;0.677521!10441-106E9;0.843372!10031-101E4;0.0189054!10063-101H9;0.809805!10063-101H9;0.637212!11763-123H8;0.678593!11765-123I1;0.330787!11768-123I4;0.604318!10807-111A6;0.449387!10790-110H7;0.943742!10798-110I6;0.443867!10786-110H3;0.630193!10591-108D6;0.660373!10593-108D8;0.420689!10590-108D5;0.228246!10026-101D8;0.55511!10096-102C6;0.8202!10168-103B6;0.251143!10154-103A1;0.821764!10209-103G2;0.89108!10061-101H7;0.933202!10027-101D9;0.957996!10043-101F7;0.821174!10783-110G9;0.816749!10028-101E1;0.329467!10060-101H6;0.210451!10203-103F5;0.833!10059-101H5;0.647203!10047-101G2;0.560469!10029-101E2;0.904126!10058-101H4;0.880794!10418-106C4;0.99201!10492-107B6;0.48927!10694-109G1;0.435055!10797-110I5;0.0979203!10057-101H3;0.0107225!10100-102D1;0.560912!10055-101H1;0.792306!10204-103F6;0.675776!10191-103E2;0.449033!10563-108A5;0.83597
|name=TGACCAA,motif340,CNhs13492,T:2566.0(44.22%),B:28874.8(36.21%),P:1e-35
|name=TGACCAA,motif340,CNhs13492,T:2566.0(44.22%),B:28874.8(36.21%),P:1e-35
|tomtom_result=HAP2#MA0313.1;-2;0.00161366;0.768104;0.877256;5;TGACCAA;ACCAA;-!MAC1#MA0326.1;0;0.00184297;0.877256;0.877256;7;TGACCAA;TGAGCAAA;-!RORA_2#MA0072.1;1;0.00653177;3.10912;1;7;TGACCAA;TTGACCTACTTATA;-!PPARG#MA0066.1;11;0.00687917;3.27449;1;7;TGACCAA;GTAGGTCACGGTGACCTACT;+!HAP3#MA0314.1;3;0.0123408;5.8742;1;7;TGACCAA;TCTGAACCAATCAGA;-!NFE2L2#MA0150.1;1;0.0148456;7.06651;1;7;TGACCAA;ATGACTCAGCA;+!NFYA#MA0060.1;2;0.0192944;9.18412;1;7;TGACCAA;CTCAGCCAATCAGCGC;+!RORA_1#MA0071.1;0;0.0201253;9.57965;1;7;TGACCAA;TGACCTTGAT;-
}}
}}

Latest revision as of 18:05, 7 September 2012

Full Name: TGACCAA,motif340,CNhs13492,T:2566.0(44.22%),B:28874.8(36.21%),P:1e-35

Motif matrix
POACGT
12.5662.5662.5662558.302
212.832.5662055.366495.238
32314.532246.3362.5662.566
42.5662186.232374.6362.566
5377.2022183.6662.5662.566
62558.3022.5662.5662.566
72558.3022.5662.5662.566

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
HAP2#MA0313.1-20.001613660.7681040.8772565TGACCAAACCAA-
MAC1#MA0326.100.001842970.8772560.8772567TGACCAATGAGCAAA-
RORA_2#MA0072.110.006531773.1091217TGACCAATTGACCTACTTATA-
PPARG#MA0066.1110.006879173.2744917TGACCAAGTAGGTCACGGTGACCTACT+
HAP3#MA0314.130.01234085.874217TGACCAATCTGAACCAATCAGA-
NFE2L2#MA0150.110.01484567.0665117TGACCAAATGACTCAGCA+
NFYA#MA0060.120.01929449.1841217TGACCAACTCAGCCAATCAGCGC+
RORA_1#MA0071.100.02012539.5796517TGACCAATGACCTTGAT-
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