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MacroAPE 1083:Motif GAAGNT: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!01;0;0;48;0!02;48;0;0;0!03;48;0;0;0!04;0;0;48;0!05;0;48;0;0!06;0;0;0;48 |macroape_1083_sample_pvalues=11376-118A8;0.718121!11327-117E4;0.9714...")
 
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7B8;0.227362!10850-111F4;0.170525!10851-111F5;0.436861!10852-111F6;0.798096!10853-111F7;0.75279!10854-111F8;0.805841!10855-111F9;0.556809!10856-111G1;0.743652!10847-111F1;0.795395!10846-111E9;0.0988805!10848-111F2;0.058519!10845-111E8;0.103777!10857-111G2;0.289137!10858-111G3;0.210722!10156-103A3;0.692597!11901-125F2;0.35235!11902-125F3;0.666613!11903-125F4;0.970679!10689-109F5;0.741748!10648-109A9;0.858906!10784-110H1;0.23495!10744-110C6;0.127844!10772-110F7;0.0444351!10474-106I6;0.477232!10600-108E6;0.455346!10684-109E9;0.543861!12226-129F3;0.25016!12227-129F4;0.440739!10508-107D4;0.817779!10539-107G8;0.602705!10607-108F4;0.501064!10555-107I6;0.527652!10774-110F9;0.350905!10637-108I7;0.543418!10663-109C6;0.612813!10728-110A8;0.936162!10729-110A9;0.586958!10430-106D7;0.939745!10730-110B1;0.844245!10813-111B3;0.838631!10812-111B2;0.598244!10037-101F1;0.450268!10172-103C1;0.340611!10163-103B1;0.385226!10076-102A4;0.35942!10073-102A1;0.345891!10036-101E9;0.335147!10195-103E6;0.374957!10277-104E7;0.342931!10434-106E2;0.444728!10550-107I1;0.237722!10545-107H5;0.0737104!10544-107H4;0.169928!10704-109H2;0.359091!10510-107D6;0.895149!10558-107I9;0.257766!10020-101D2;0.286313!10732-110B3;0.790297!10049-101G4;0.962177!10698-109G5;0.975813!10437-106E5;0.429822!10417-106C3;0.595964!10035-101E8;0.305104!10171-103B9;0.384944!10157-103A4;0.358797!10034-101E7;0.348556!10072-101I9;0.387194!10199-103F1;0.398672!10200-103F2;0.787263!10697-109G4;0.546933!10723-110A3;0.57773!10179-103C8;0.580491!10160-103A7;0.436079!10180-103C9;0.224337!10162-103A9;0.718309!10021-101D3;0.871372!10840-111E3;0.780474!10706-109H4;0.791475!10033-101E6;0.53491!10032-101E5;0.366785!10490-107B4;0.362088!10439-106E7;0.144952!10022-101D4;0.070694!10176-103C5;0.93947!10469-106I1;0.237874!10067-101I4;0.421848!10411-106B6;0.433727!10471-106I3;0.198135!10030-101E3;0.738938!10475-106I7;0.678192!10787-110H4;0.954898!10477-106I9;0.654722!10695-109G2;0.999871!11771-123I7;0.491089!11772-123I8;0.00633338!11773-123I9;0.0759319!10093-102C3;0.0845144!10442-106F1;0.982822!10442-106F1;0.149479!10201-103F3;0.142119!10639-108I9;0.685444!11843-124H7;0.449365!11841-124H5;0.0412518!10693-109F9;0.179286!10436-106E4;0.546917!10483-107A6;0.300396!10282-104F3;0.275691!10023-101D5;0.895663!10066-101I3;0.896121!10065-101I2;0.394617!10800-110I8;0.64937!10610-108F7;0.40171!10841-111E4;0.49973!10541-107H1;0.793977!10842-111E5;0.331562!10562-108A4;0.991251!10024-101D6;0.646222!10064-101I1;0.737416!10609-108F6;0.727784!10048-101G3;0.672381!10781-110G7;0.787911!10181-103D1;0.798869!10159-103A6;0.583641!10056-101H2;0.561405!10737-110B8;0.403825!10025-101D7;0.975555!10044-101F8;0.681145!10424-106D1;0.954932!10463-106H4;0.878746!10616-108G4;0.287906!10486-107A9;0.433552!10062-101H8;0.346166!10202-103F4;0.848297!10158-103A5;0.723053!10441-106E9;0.584045!10031-101E4;0.449383!10063-101H9;0.364142!10063-101H9;0.304605!11763-123H8;0.440832!11765-123I1;0.791365!11768-123I4;0.901963!10807-111A6;0.908801!10790-110H7;0.653105!10798-110I6;0.552518!10786-110H3;0.884035!10591-108D6;0.214686!10593-108D8;0.551118!10590-108D5;0.470178!10026-101D8;0.490897!10096-102C6;0.543341!10168-103B6;0.366021!10154-103A1;0.463008!10209-103G2;0.293622!10061-101H7;0.707239!10027-101D9;0.449793!10043-101F7;0.238016!10783-110G9;0.231879!10028-101E1;0.202419!10060-101H6;0.949781!10203-103F5;0.669766!10059-101H5;0.770859!10047-101G2;0.704849!10029-101E2;0.632836!10058-101H4;0.872132!10418-106C4;0.536686!10492-107B6;0.110765!10694-109G1;0.285288!10797-110I5;0.807782!10057-101H3;0.178093!10100-102D1;0.629371!10055-101H1;0.618542!10204-103F6;0.583362!10191-103E2;0.545496!10563-108A5;0.483274
|name=motif_GAAGNT
|name=motif_GAAGNT
|tomtom_result=GCR1#MA0304.1;2;0.00226028;1.07589;0.678804;6;GAAGCT;TGGAAGCC;+!Nr2e3#MA0164.1;0;0.00227905;1.08483;0.678804;6;GAAGCT;CAAGCTT;+!GCR2#MA0305.1;2;0.00259726;1.23629;0.678804;5;GAAGCT;AGGAAGC;-!che-1#MA0260.1;0;0.00854851;4.06909;1;6;GAAGCT;GAAACC;+!NHLH1#MA0048.1;2;0.0150132;7.1463;1;6;GAAGCT;ACGCAGCTGCGC;-!Dof2#MA0020.1;0;0.0194662;9.26591;1;6;GAAGCT;AAAGCA;+
}}
}}

Latest revision as of 15:01, 7 September 2012

Full Name: motif_GAAGNT

Motif matrix
POACGT
0100480
0248000
0348000
0400480
0504800
0600048

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
GCR1#MA0304.120.002260281.075890.6788046GAAGCTTGGAAGCC+
Nr2e3#MA0164.100.002279051.084830.6788046GAAGCTCAAGCTT+
GCR2#MA0305.120.002597261.236290.6788045GAAGCTAGGAAGC-
che-1#MA0260.100.008548514.0690916GAAGCTGAAACC+
NHLH1#MA0048.120.01501327.146316GAAGCTACGCAGCTGCGC-
Dof2#MA0020.100.01946629.2659116GAAGCTAAAGCA+
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