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MacroAPE 1083:4-TTAAACCG: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;27.552;86.1;13.202;447.146!2;49.364;48.79;29.274;446.572!3;416.15;95.284;57.4;5.166!4;503.398;0.574;7.462;62.566!5;433.944;41.328;72.898;25....")
 
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271!10789-110H6;0.953257!10828-111C9;0.373381!10788-110H5;0.743753!10792-110H9;0.258903!10765-110E9;0.395606!10829-111D1;0.0934944!10830-111D2;0.686529!10831-111D3;0.999475!10832-111D4;0.263683!10833-111D5;0.148412!10764-110E8;0.0857419!10770-110F5;0.0444339!10399-106A3;0.330929!10400-106A4;0.0141966!10405-106A9;0.0278202!10834-111D6;0.0309241!10835-111D7;0.35015!10836-111D8;0.956265!10837-111D9;0.170198!10699-109G6;0.50569!10802-111A1;0.52664!10796-110I4;0.139464!10010-101C1;0.115585!10810-111A9;0.565213!10421-106C7;0.402063!10708-109H6;0.4538!12235-129G3;0.18623!12236-129G4;0.19418!12237-129G5;0.918909!10167-103B5;0.0799307!10151-102I7;0.343545!10428-106D5;0.416831!10795-110I3;0.702457!10805-111A4;0.601294!10052-101G7;0.552226!10189-103D9;0.856205!10589-108D4;0.853449!10425-106D2;0.700896!10427-106D4;0.841942!10702-109G9;0.512542!10432-106D9;0.167373!10496-107C1;0.0135492!10718-109I7;0.810608!10011-101C2;0.0500534!10053-101G8;0.517802!10686-109F2;0.595262!10084-102B3;0.418039!10012-101C3;0.606258!10085-102B4;0.285451!10482-107A5;0.765127!10419-106C5;0.511397!10080-102A8;0.0734413!10760-110E4;0.552484!10709-109H7;0.407917!10710-109H8;0.0537752!10703-109H1;0.0162152!10719-109I8;0.144772!10642-109A3;0.00761397!10177-103C6;0.00765233!10164-103B2;0.233956!10173-103C2;0.276028!10166-103B4;0.833947!10083-102B2;0.900579!10188-103D8;0.954985!10552-107I3;0.372824!10553-107I4;0.813919!10013-101C4;0.345911!10536-107G5;0.657617!10618-108G6;0.901988!10423-106C9;0.0032411!10785-110H2;0.0146687!12238-129G6;0.0308498!12239-129G7;0.429277!12240-129G8;0.807267!10416-106C2;0.147697!10801-110I9;0.932335!10766-110F1;0.283747!10824-111C5;0.0285825!10825-111C6;0.415927!10826-111C7;0.319162!10454-106G4;0.428665!10409-106B4;0.537485!10638-108I8;0.0340438!10636-108I6;0.317109!10513-107D9;0.149713!10420-106C6;0.0620186!10082-102B1;0.575047!10014-101C5;0.373692!10070-101I7;0.743845!10452-106G2;0.974505!10453-106G3;0.54895!10449-106F8;0.415373!10042-101F6;0.600826!10069-101I6;0.52107!10193-103E4;0.719981!10631-108I1;0.293167!10438-106E6;0.715102!10488-107B2;0.0425729!10196-103E7;0.424415!10071-101I8;0.492411!10071-101I8;0.9956!10041-101F5;0.790493!10451-106G1;0.924837!10450-106F9;0.172716!10604-108F1;0.0759366!10605-108F2;0.128327!10606-108F3;0.0931608!10603-108E9;0.148971!10497-107C2;0.913754!10448-106F7;0.219521!10643-109A4;0.764882!10426-106D3;0.466468!10431-106D8;0.382514!10197-103E8;0.02767!10443-106F2;0.409618!10815-111B5;0.876887!10816-111B6;0.140326!10817-111B7;0.212781!10015-101C6;0.162119!10410-106B5;0.767558!10054-101G9;0.861948!10758-110E2;0.57437!10711-109H9;0.6734!10040-101F4;0.236059!10470-106I2;0.260148!10415-106C1;0.0387798!10198-103E9;0.503203!10614-108G2;0.826547!10612-108F9;0.0795506!10549-107H9;0.142462!10615-108G3;0.216023!10487-107B1;0.541164!10433-106E1;0.881179!10688-109F4;0.386633!10444-106F3;0.86743!10444-106F3;0.364769!10485-107A8;0.460123!10413-106B8;0.259667!10175-103C4;0.454449!10161-103A8;0.327641!12131-128D7;0.453141!10624-108H3;0.132209!10712-109I1;0.496097!10205-103F7;0.914424!10206-103F8;0.698345!10207-103F9;0.56621!10050-101G5;0.768009!10051-101G6;0.505019!10016-101C7;0.709602!10046-101G1;0.960855!10778-110G4;0.868111!10633-108I3;0.466794!10818-111B8;0.0177616!10819-111B9;0.526727!10820-111C1;0.540052!10484-107A7;0.532249!10808-111A7;0.338908!10169-103B7;0.837358!10153-102I9;0.487447!13425-144D5;0.46338!13433-144E4;0.0190136!13437-144E8;0.0330573!11904-125F5;0.117586!11905-125F6;0.783968!10039-101F3;0.997676!10791-110H8;0.333775!10017-101C8;0.720754!10045-101F9;0.358154!10509-107D5;0.95888!10839-111E2;0.922472!10692-109F8;0.0821954!10079-102A7;0.075584!10078-102A6;0.626161!10721-110A1;0.930878!10569-108B2;0.782082!10570-108B3;0.134795!10571-108B4;0.024726!10647-109A8;0.182555!10752-110D5;0.000289166!10782-110G8;0.153503!10726-110A6;0.898018!10018-101C9;0.0173152!10086-102B5;0.201664!10182-103D2;0.432421!10165-103B3;0.38335!10499-107C4;0.28473!10408-106B3;0.600605!10019-101D1;0.054444!10068-101I5;0.526791!10075-102A3;0.318454!10077-102A5;0.657522!10727-110A7;0.99532!10775-110G1;0.51996!10412-106B7;0.198605!12231-129F8;0.670513!12232-129F9;0.839358!12233-129G1;0.484589!12234-129G2;0.421783!10414-106B9;0.290519!10170-103B8;0.942173!10183-103D3;0.262296!10150-102I6;0.188841!10174-103C3;0.361543!10155-103A2;0.290889!10038-101F2;0.585789!10838-111E1;0.430586!10759-110E3;0.0320206!10514-107E1;0.255022!10465-106H6;0.489592!10691-109F7;0.318653!10843-111E6;0.936891!10844-111E7;0.117488!11747-123G1;0.0529468!11748-123G2;0.507969!11749-123G3;0.426842!11750-123G4;0.517807!11751-123G5;0.55698!11840-124H4;0.189219!11752-123G6;0.474118!11753-123G7;0.129692!11754-123G8;0.648378!11755-123G9;0.830133!11756-123H1;0.695779!11833-124G6;0.726272!11760-123H5;0.322603!11836-124G9;0.936505!11758-123H3;0.145679!11835-124G8;0.126644!11762-123H7;0.278892!11838-124H2;0.267047!11757-123H2;0.360237!11759-123H4;0.427544!11761-123H6;0.208379!11842-124H6;0.198565!11837-124H1;0.320292!10568-108B1;0.376656!13230-141I8;0.230783!13231-141I9;0.447656!10696-109G3;0.378124!10493-107B7;0.350771!10494-107B8;0.517248!10850-111F4;0.0426591!10851-111F5;0.0512905!10852-111F6;0.253521!10853-111F7;0.214885!10854-111F8;0.133241!10855-111F9;0.559361!10856-111G1;0.181887!10847-111F1;0.127483!10846-111E9;0.153586!10848-111F2;0.522487!10845-111E8;0.445051!10857-111G2;0.547455!10858-111G3;0.271919!10156-103A3;0.203616!11901-125F2;0.408781!11902-125F3;0.231551!11903-125F4;0.207416!10689-109F5;0.134164!10648-109A9;0.0994719!10784-110H1;0.25982!10744-110C6;0.157856!10772-110F7;0.946259!10474-106I6;0.0660114!10600-108E6;0.217906!10684-109E9;0.0245189!12226-129F3;0.277872!12227-129F4;0.198792!10508-107D4;0.828194!10539-107G8;0.550442!10607-108F4;0.335424!10555-107I6;8.47886e-06!10774-110F9;0.588749!10637-108I7;0.240023!10663-109C6;0.0776882!10728-110A8;0.00737085!10729-110A9;0.000604324!10430-106D7;0.644412!10730-110B1;0.207967!10813-111B3;0.955464!10812-111B2;0.996885!10037-101F1;0.61449!10172-103C1;0.267377!10163-103B1;0.343065!10076-102A4;0.51912!10073-102A1;0.401688!10036-101E9;0.807794!10195-103E6;0.437882!10277-104E7;0.369548!10434-106E2;0.665746!10550-107I1;0.594445!10545-107H5;0.384182!10544-107H4;0.296481!10704-109H2;0.227487!10510-107D6;0.55146!10558-107I9;0.00952596!10020-101D2;0.628017!10732-110B3;0.547136!10049-101G4;0.0299118!10698-109G5;0.0399708!10437-106E5;0.0229788!10417-106C3;0.976611!10035-101E8;0.00953917!10171-103B9;0.320977!10157-103A4;0.233628!10034-101E7;0.389011!10072-101I9;0.313931!10199-103F1;0.795364!10200-103F2;0.0392293!10697-109G4;0.558986!10723-110A3;0.444998!10179-103C8;0.190195!10160-103A7;0.354666!10180-103C9;0.396019!10162-103A9;0.234029!10021-101D3;0.337065!10840-111E3;0.852877!10706-109H4;0.560951!10033-101E6;0.487918!10032-101E5;0.235336!10490-107B4;0.352563!10439-106E7;0.0761551!10022-101D4;0.0234882!10176-103C5;0.612376!10469-106I1;0.284614!10067-101I4;0.0542376!10411-106B6;0.526766!10471-106I3;0.853255!10030-101E3;0.558663!10475-106I7;0.920733!10787-110H4;0.260979!10477-106I9;0.641425!10695-109G2;0.0245277!11771-123I7;0.42756!11772-123I8;0.00369293!11773-123I9;0.24007!10093-102C3;0.381047!10442-106F1;0.0401216!10442-106F1;0.917935!10201-103F3;0.863972!10639-108I9;0.466555!11843-124H7;0.0263523!11841-124H5;0.673843!10693-109F9;0.68923!10436-106E4;0.0373271!10483-107A6;0.479853!10282-104F3;0.111941!10023-101D5;0.409944!10066-101I3;0.6123!10065-101I2;0.920211!10800-110I8;0.860881!10610-108F7;0.145416!10841-111E4;0.887603!10541-107H1;0.101849!10842-111E5;0.448903!10562-108A4;0.194705!10024-101D6;0.463072!10064-101I1;0.635456!10609-108F6;0.987139!10048-101G3;0.193073!10781-110G7;0.664278!10181-103D1;0.646557!10159-103A6;0.522167!10056-101H2;0.573489!10737-110B8;0.8995!10025-101D7;0.977298!10044-101F8;0.98886!10424-106D1;0.917072!10463-106H4;0.698923!10616-108G4;0.543988!10486-107A9;0.896688!10062-101H8;0.817841!10202-103F4;0.241857!10158-103A5;0.150057!10441-106E9;0.374464!10031-101E4;0.00185425!10063-101H9;0.368264!10063-101H9;0.756573!11763-123H8;0.411379!11765-123I1;0.363791!11768-123I4;0.549117!10807-111A6;0.437739!10790-110H7;0.0905698!10798-110I6;0.232011!10786-110H3;0.0030114!10591-108D6;0.0158677!10593-108D8;0.000370886!10590-108D5;0.019818!10026-101D8;0.0242343!10096-102C6;0.428118!10168-103B6;0.110081!10154-103A1;0.396724!10209-103G2;0.373123!10061-101H7;0.616161!10027-101D9;0.93437!10043-101F7;0.92554!10783-110G9;0.840173!10028-101E1;0.265064!10060-101H6;0.757767!10203-103F5;0.916165!10059-101H5;0.545418!10047-101G2;0.695948!10029-101E2;0.939552!10058-101H4;0.603906!10418-106C4;0.82327!10492-107B6;0.0581731!10694-109G1;0.0759603!10797-110I5;0.0129209!10057-101H3;0.794449!10100-102D1;0.824062!10055-101H1;0.53536!10204-103F6;0.924191!10191-103E2;0.985733!10563-108A5;0.973844
|name=4-TTAAACCG,BestGuess:MA0218.1_ct(0.736810492124554),T:574.0(29.56%),B:8494.7(18.45%),P:1e-30
|name=4-TTAAACCG,BestGuess:MA0218.1_ct(0.736810492124554),T:574.0(29.56%),B:8494.7(18.45%),P:1e-30
|tomtom_result=ct#MA0218.1;0;0.0029593;1.40863;1;6;TTAAACCG;TTGAAC;+!ARID3A#MA0151.1;1;0.00854886;4.06926;1;5;TTAAACCG;ATTAAA;+!Ptx1#MA0201.1;0;0.00883225;4.20415;1;7;TTAAACCG;TTAATCC;+!Tcfcp2l1#MA0145.1;5;0.0148715;7.07883;1;8;TTAAACCG;CCAGTTCAAACCAG;+
}}
}}

Latest revision as of 14:44, 7 September 2012

Full Name: 4-TTAAACCG,BestGuess:MA0218.1_ct(0.736810492124554),T:574.0(29.56%),B:8494.7(18.45%),P:1e-30

Motif matrix
POACGT
127.55286.113.202447.146
249.36448.7929.274446.572
3416.1595.28457.45.166
4503.3980.5747.46262.566
5433.94441.32872.89825.83
691.266278.96473.472130.298
717.794463.21892.4140.574
816.07296.432455.7565.74

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
ct#MA0218.100.00295931.4086316TTAAACCGTTGAAC+
ARID3A#MA0151.110.008548864.0692615TTAAACCGATTAAA+
Ptx1#MA0201.100.008832254.2041517TTAAACCGTTAATCC+
Tcfcp2l1#MA0145.150.01487157.0788318TTAAACCGCCAGTTCAAACCAG+
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