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MacroAPE 1083:11-AACGAATCGA: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;619.08;70.224;116.424;118.272!2;682.836;56.364;132.132;52.668!3;85.932;642.18;106.26;89.628!4;97.02;159.852;600.6;66.528!5;709.632;103.488;8...")
 
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0.618672!10827-111C8;0.322277!10789-110H6;0.504239!10828-111C9;0.150829!10788-110H5;0.193912!10792-110H9;0.525456!10765-110E9;0.728136!10829-111D1;0.338229!10830-111D2;0.740454!10831-111D3;0.851048!10832-111D4;0.354466!10833-111D5;0.170138!10764-110E8;0.203159!10770-110F5;0.137591!10399-106A3;0.146883!10400-106A4;0.0802821!10405-106A9;0.0669989!10834-111D6;0.0776016!10835-111D7;0.270839!10836-111D8;0.169395!10837-111D9;0.304606!10699-109G6;0.0361272!10802-111A1;0.862656!10796-110I4;0.428287!10010-101C1;0.13879!10810-111A9;0.069743!10421-106C7;0.488784!10708-109H6;0.013321!12235-129G3;0.184523!12236-129G4;0.00964792!12237-129G5;0.000722328!10167-103B5;0.00381218!10151-102I7;0.260073!10428-106D5;0.157098!10795-110I3;0.602007!10805-111A4;0.853425!10052-101G7;0.149201!10189-103D9;0.0517526!10589-108D4;0.0634791!10425-106D2;0.213851!10427-106D4;0.659864!10702-109G9;0.0194015!10432-106D9;0.318559!10496-107C1;0.697203!10718-109I7;0.41915!10011-101C2;0.0321962!10053-101G8;0.0560043!10686-109F2;0.141924!10084-102B3;0.00142411!10012-101C3;0.126902!10085-102B4;0.136589!10482-107A5;0.187326!10419-106C5;0.141127!10080-102A8;0.54227!10760-110E4;0.437871!10709-109H7;0.450982!10710-109H8;0.886439!10703-109H1;0.0504944!10719-109I8;0.0313129!10642-109A3;0.0642165!10177-103C6;0.166409!10164-103B2;0.39775!10173-103C2;0.210185!10166-103B4;0.138875!10083-102B2;0.0686804!10188-103D8;0.12726!10552-107I3;0.198938!10553-107I4;0.109593!10013-101C4;0.798191!10536-107G5;0.0943168!10618-108G6;0.123803!10423-106C9;0.0285003!10785-110H2;0.0268224!12238-129G6;0.0131852!12239-129G7;0.380485!12240-129G8;0.892796!10416-106C2;0.313381!10801-110I9;0.474592!10766-110F1;0.443908!10824-111C5;0.740352!10825-111C6;0.286619!10826-111C7;0.237554!10454-106G4;0.240184!10409-106B4;0.346533!10638-108I8;0.261639!10636-108I6;0.211596!10513-107D9;0.0796883!10420-106C6;0.108658!10082-102B1;0.0727095!10014-101C5;0.0454549!10070-101I7;0.0756843!10452-106G2;0.0622755!10453-106G3;0.0816521!10449-106F8;0.0981963!10042-101F6;0.188296!10069-101I6;0.315024!10193-103E4;0.0115892!10631-108I1;0.268294!10438-106E6;0.312464!10488-107B2;0.464139!10196-103E7;0.306575!10071-101I8;0.0194275!10071-101I8;0.0589028!10041-101F5;0.161844!10451-106G1;0.0921838!10450-106F9;0.00148801!10604-108F1;0.00154896!10605-108F2;0.00372021!10606-108F3;0.00966765!10603-108E9;0.0338095!10497-107C2;0.0142101!10448-106F7;0.0953577!10643-109A4;0.00426451!10426-106D3;0.373301!10431-106D8;0.227838!10197-103E8;0.0581748!10443-106F2;0.054481!10815-111B5;0.0566993!10816-111B6;0.456546!10817-111B7;0.422639!10015-101C6;0.558101!10410-106B5;0.021836!10054-101G9;0.929048!10758-110E2;0.015933!10711-109H9;0.143765!10040-101F4;0.00274509!10470-106I2;0.136976!10415-106C1;0.318683!10198-103E9;0.351445!10614-108G2;0.0781369!10612-108F9;0.0961074!10549-107H9;0.192431!10615-108G3;0.0173033!10487-107B1;0.273659!10433-106E1;0.984165!10688-109F4;0.480373!10444-106F3;0.359311!10444-106F3;0.00634718!10485-107A8;0.00476449!10413-106B8;0.00250263!10175-103C4;0.166038!10161-103A8;0.522118!12131-128D7;0.336527!10624-108H3;0.755589!10712-109I1;0.340919!10205-103F7;0.986653!10206-103F8;0.0480932!10207-103F9;0.0271551!10050-101G5;0.0154715!10051-101G6;0.350222!10016-101C7;0.0558848!10046-101G1;0.0419496!10778-110G4;0.0677205!10633-108I3;0.396036!10818-111B8;0.233556!10819-111B9;0.578833!10820-111C1;0.537652!10484-107A7;0.532561!10808-111A7;0.526579!10169-103B7;0.059037!10153-102I9;0.170969!13425-144D5;0.216391!13433-144E4;0.0951873!13437-144E8;0.192836!11904-125F5;0.173014!11905-125F6;0.610802!10039-101F3;0.906716!10791-110H8;0.152142!10017-101C8;0.662792!10045-101F9;0.222943!10509-107D5;0.305936!10839-111E2;0.643711!10692-109F8;0.661996!10079-102A7;0.002896!10078-102A6;0.11883!10721-110A1;0.11092!10569-108B2;0.705453!10570-108B3;0.58908!10571-108B4;0.996595!10647-109A8;0.467585!10752-110D5;0.0981016!10782-110G8;0.15608!10726-110A6;0.832691!10018-101C9;0.00383342!10086-102B5;0.0164922!10182-103D2;0.157723!10165-103B3;0.297233!10499-107C4;0.16413!10408-106B3;0.148618!10019-101D1;0.397948!10068-101I5;0.134098!10075-102A3;0.0185276!10077-102A5;0.0268706!10727-110A7;0.104354!10775-110G1;0.249425!10412-106B7;0.291136!12231-129F8;0.404608!12232-129F9;0.335002!12233-129G1;0.331375!12234-129G2;0.465803!10414-106B9;0.206845!10170-103B8;0.358052!10183-103D3;0.182178!10150-102I6;0.097836!10174-103C3;0.102785!10155-103A2;0.450695!10038-101F2;0.288435!10838-111E1;0.256413!10759-110E3;0.315593!10514-107E1;0.306281!10465-106H6;0.120757!10691-109F7;0.465287!10843-111E6;0.398887!10844-111E7;0.134653!11747-123G1;0.356259!11748-123G2;0.980602!11749-123G3;0.943158!11750-123G4;0.671255!11751-123G5;0.70713!11840-124H4;0.575035!11752-123G6;0.246182!11753-123G7;0.260058!11754-123G8;0.742219!11755-123G9;0.29026!11756-123H1;0.0752972!11833-124G6;0.364788!11760-123H5;0.886339!11836-124G9;0.555363!11758-123H3;0.873577!11835-124G8;0.938366!11762-123H7;0.398192!11838-124H2;0.433685!11757-123H2;0.64417!11759-123H4;0.40176!11761-123H6;0.994702!11842-124H6;0.700888!11837-124H1;0.630157!10568-108B1;0.261933!13230-141I8;0.0117758!13231-141I9;0.688471!10696-109G3;0.634204!10493-107B7;0.367324!10494-107B8;0.00524288!10850-111F4;0.0605767!10851-111F5;0.09162!10852-111F6;0.00171174!10853-111F7;0.0841949!10854-111F8;0.0287529!10855-111F9;0.227091!10856-111G1;0.148101!10847-111F1;0.116383!10846-111E9;0.0145937!10848-111F2;0.0166034!10845-111E8;0.00117792!10857-111G2;0.0377688!10858-111G3;0.00462576!10156-103A3;0.000618664!11901-125F2;0.112495!11902-125F3;0.756363!11903-125F4;0.960463!10689-109F5;0.776286!10648-109A9;0.0590921!10784-110H1;0.101984!10744-110C6;0.402741!10772-110F7;0.701122!10474-106I6;0.084995!10600-108E6;0.120456!10684-109E9;0.00169972!12226-129F3;0.253215!12227-129F4;0.948704!10508-107D4;0.00035045!10539-107G8;0.935406!10607-108F4;0.454886!10555-107I6;0.28762!10774-110F9;0.680519!10637-108I7;0.233559!10663-109C6;0.459441!10728-110A8;0.402841!10729-110A9;0.120815!10430-106D7;0.571332!10730-110B1;0.434942!10813-111B3;0.372472!10812-111B2;0.99029!10037-101F1;0.30078!10172-103C1;0.187893!10163-103B1;0.174379!10076-102A4;0.138694!10073-102A1;0.157813!10036-101E9;0.138575!10195-103E6;0.153178!10277-104E7;0.134098!10434-106E2;0.304443!10550-107I1;0.397166!10545-107H5;0.142748!10544-107H4;0.978551!10704-109H2;0.46456!10510-107D6;0.553946!10558-107I9;0.0333543!10020-101D2;0.35853!10732-110B3;0.0448009!10049-101G4;0.249354!10698-109G5;0.0854383!10437-106E5;0.129089!10417-106C3;0.0798836!10035-101E8;0.659638!10171-103B9;0.119852!10157-103A4;0.152542!10034-101E7;0.0851597!10072-101I9;0.128159!10199-103F1;0.316341!10200-103F2;0.0360176!10697-109G4;0.0109772!10723-110A3;0.0538745!10179-103C8;0.579734!10160-103A7;0.182647!10180-103C9;0.169214!10162-103A9;0.0448208!10021-101D3;0.0492785!10840-111E3;0.289492!10706-109H4;0.0573983!10033-101E6;0.412601!10032-101E5;0.18476!10490-107B4;0.15313!10439-106E7;0.0328665!10022-101D4;0.604044!10176-103C5;0.0613638!10469-106I1;0.277552!10067-101I4;0.491755!10411-106B6;0.172509!10471-106I3;0.15476!10030-101E3;0.303885!10475-106I7;0.0522162!10787-110H4;0.227279!10477-106I9;0.409203!10695-109G2;0.452558!11771-123I7;0.368469!11772-123I8;0.580918!11773-123I9;0.440855!10093-102C3;0.845951!10442-106F1;0.0572386!10442-106F1;0.0730643!10201-103F3;0.152196!10639-108I9;0.0312275!11843-124H7;0.340174!11841-124H5;0.300668!10693-109F9;0.145603!10436-106E4;0.566465!10483-107A6;0.183333!10282-104F3;0.706003!10023-101D5;0.0313641!10066-101I3;0.0361943!10065-101I2;0.0237192!10800-110I8;0.0137636!10610-108F7;0.175901!10841-111E4;0.721557!10541-107H1;0.420138!10842-111E5;0.113127!10562-108A4;0.105016!10024-101D6;0.164172!10064-101I1;0.0199027!10609-108F6;0.0465737!10048-101G3;0.784823!10781-110G7;0.033374!10181-103D1;0.458935!10159-103A6;0.2709!10056-101H2;0.614812!10737-110B8;0.219619!10025-101D7;0.58994!10044-101F8;0.475287!10424-106D1;0.48624!10463-106H4;0.1982!10616-108G4;0.157763!10486-107A9;0.589187!10062-101H8;0.470317!10202-103F4;0.137769!10158-103A5;0.028232!10441-106E9;0.370012!10031-101E4;0.136049!10063-101H9;0.176499!10063-101H9;0.229528!11763-123H8;0.0313261!11765-123I1;0.388283!11768-123I4;0.249627!10807-111A6;0.306612!10790-110H7;0.122!10798-110I6;0.106736!10786-110H3;0.385135!10591-108D6;0.0509499!10593-108D8;0.0145456!10590-108D5;0.0216493!10026-101D8;0.0253253!10096-102C6;0.446873!10168-103B6;0.541426!10154-103A1;0.189712!10209-103G2;0.367214!10061-101H7;0.0167686!10027-101D9;0.0242672!10043-101F7;0.511817!10783-110G9;0.366938!10028-101E1;0.237389!10060-101H6;0.0337521!10203-103F5;0.0748265!10059-101H5;0.00737617!10047-101G2;0.00626449!10029-101E2;0.0317959!10058-101H4;0.0419864!10418-106C4;0.0130354!10492-107B6;0.11508!10694-109G1;0.00795206!10797-110I5;0.285011!10057-101H3;0.544071!10100-102D1;0.0778021!10055-101H1;0.195046!10204-103F6;0.110007!10191-103E2;0.0975249!10563-108A5;0.0462613
|name=11-AACGAATCGA,CNhs11047,BestGuess:SOX4_f1_HM09(0.589011831866508),T:924.0(33.58%),B:10312.0(23.25%),P:1e-34
|name=11-AACGAATCGA,CNhs11047,BestGuess:SOX4_f1_HM09(0.589011831866508),T:924.0(33.58%),B:10312.0(23.25%),P:1e-34
|tomtom_result=ttx-3::ceh-10#MA0263.1;2;0.0030651;1.45899;1;10;AACGAATCGA;TTAACGAAGCCAAT;-!HMG-I/Y#MA0045.1;1;0.00417049;1.98516;1;10;AACGAATCGA;CAACAAATGGAAAAAC;+!SFL1#MA0377.1;1;0.00570813;2.71707;1;10;AACGAATCGA;TAGAGAATAGAAGAAATAAAA;+!OPI1#MA0349.1;-2;0.0085274;4.05904;1;7;AACGAATCGA;CGAACCG;+!Deaf1#MA0185.1;0;0.0179513;8.54482;1;6;AACGAATCGA;CACGAA;-!br_Z3#MA0012.1;2;0.0184086;8.76247;1;9;AACGAATCGA;TAAACTAAAAG;+
}}
}}

Latest revision as of 14:09, 7 September 2012

Full Name: 11-AACGAATCGA,CNhs11047,BestGuess:SOX4_f1_HM09(0.589011831866508),T:924.0(33.58%),B:10312.0(23.25%),P:1e-34

Motif matrix
POACGT
1619.0870.224116.424118.272
2682.83656.364132.13252.668
385.932642.18106.2689.628
497.02159.852600.666.528
5709.632103.48885.93224.948
6648.64884.084100.71690.552
7133.98104.41287.78597.828
830.492668.976131.20893.324
998.868164.472620.92839.732
10678.21685.93267.45292.4

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
ttx-3::ceh-10#MA0263.120.00306511.45899110AACGAATCGATTAACGAAGCCAAT-
HMG-I/Y#MA0045.110.004170491.98516110AACGAATCGACAACAAATGGAAAAAC+
SFL1#MA0377.110.005708132.71707110AACGAATCGATAGAGAATAGAAGAAATAAAA+
OPI1#MA0349.1-20.00852744.0590417AACGAATCGACGAACCG+
Deaf1#MA0185.100.01795138.5448216AACGAATCGACACGAA-
br_Z3#MA0012.120.01840868.7624719AACGAATCGATAAACTAAAAG+
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