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MacroAPE 1083:CCAATCCGGT,motif823: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;27.38;309.69;32.56;0.37!2;19.24;326.71;23.68;0.37!3;289.71;26.64;27.38;26.27!4;286.38;12.95;40.33;30.34!5;4.81;31.82;32.93;300.44!6;34.41;29...")
 
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-106H5;0.818324!10827-111C8;0.588432!10789-110H6;0.240028!10828-111C9;0.807199!10788-110H5;0.5663!10792-110H9;0.980343!10765-110E9;0.770066!10829-111D1;0.450332!10830-111D2;0.556036!10831-111D3;0.293996!10832-111D4;0.370687!10833-111D5;0.64881!10764-110E8;0.515589!10770-110F5;0.516276!10399-106A3;0.801497!10400-106A4;0.801631!10405-106A9;0.804183!10834-111D6;0.810617!10835-111D7;0.548578!10836-111D8;0.490186!10837-111D9;0.145008!10699-109G6;0.38052!10802-111A1;0.763287!10796-110I4;0.549164!10010-101C1;0.77004!10810-111A9;0.582944!10421-106C7;0.74129!10708-109H6;0.125615!12235-129G3;0.892115!12236-129G4;0.470185!12237-129G5;0.134404!10167-103B5;0.591678!10151-102I7;0.681098!10428-106D5;0.665991!10795-110I3;0.651661!10805-111A4;0.222047!10052-101G7;0.317219!10189-103D9;0.860698!10589-108D4;0.844936!10425-106D2;0.79996!10427-106D4;0.409645!10702-109G9;0.923458!10432-106D9;0.0941668!10496-107C1;0.980611!10718-109I7;0.985801!10011-101C2;0.982002!10053-101G8;0.450031!10686-109F2;0.0303053!10084-102B3;0.412225!10012-101C3;0.813389!10085-102B4;0.763234!10482-107A5;0.445061!10419-106C5;0.274663!10080-102A8;0.353031!10760-110E4;0.906231!10709-109H7;0.535059!10710-109H8;0.679795!10703-109H1;0.662734!10719-109I8;0.493499!10642-109A3;0.390675!10177-103C6;0.700158!10164-103B2;0.590295!10173-103C2;0.590612!10166-103B4;0.836922!10083-102B2;0.760917!10188-103D8;0.810434!10552-107I3;0.765347!10553-107I4;0.83956!10013-101C4;0.219666!10536-107G5;0.940394!10618-108G6;0.580082!10423-106C9;0.299108!10785-110H2;0.162667!12238-129G6;0.39493!12239-129G7;0.428569!12240-129G8;0.95089!10416-106C2;0.963422!10801-110I9;0.883747!10766-110F1;0.293101!10824-111C5;0.146871!10825-111C6;0.382819!10826-111C7;0.339928!10454-106G4;0.270485!10409-106B4;0.282497!10638-108I8;0.297661!10636-108I6;0.928469!10513-107D9;0.419804!10420-106C6;0.181585!10082-102B1;0.247852!10014-101C5;0.999469!10070-101I7;0.850511!10452-106G2;0.966263!10453-106G3;0.952805!10449-106F8;0.854851!10042-101F6;0.917864!10069-101I6;0.562116!10193-103E4;0.780283!10631-108I1;0.606795!10438-106E6;0.993817!10488-107B2;0.831916!10196-103E7;0.840197!10071-101I8;0.988908!10071-101I8;0.841821!10041-101F5;0.373953!10451-106G1;0.872228!10450-106F9;0.107757!10604-108F1;0.0407291!10605-108F2;0.561473!10606-108F3;0.763868!10603-108E9;0.62045!10497-107C2;0.561321!10448-106F7;0.486204!10643-109A4;0.931558!10426-106D3;0.995501!10431-106D8;0.827146!10197-103E8;0.621557!10443-106F2;0.821551!10815-111B5;0.196367!10816-111B6;0.829833!10817-111B7;0.963405!10015-101C6;0.797464!10410-106B5;0.683253!10054-101G9;0.494662!10758-110E2;0.49193!10711-109H9;0.453092!10040-101F4;0.677619!10470-106I2;0.756179!10415-106C1;0.113466!10198-103E9;0.241475!10614-108G2;0.705786!10612-108F9;0.764269!10549-107H9;0.916977!10615-108G3;0.260826!10487-107B1;0.897304!10433-106E1;0.265224!10688-109F4;0.531612!10444-106F3;0.595523!10444-106F3;0.0535248!10485-107A8;0.0122524!10413-106B8;0.0541562!10175-103C4;0.248687!10161-103A8;0.570282!12131-128D7;0.580878!10624-108H3;0.299338!10712-109I1;0.635042!10205-103F7;0.888291!10206-103F8;0.978864!10207-103F9;0.921232!10050-101G5;0.364046!10051-101G6;0.382906!10016-101C7;0.985152!10046-101G1;0.770724!10778-110G4;0.192846!10633-108I3;0.320834!10818-111B8;0.183787!10819-111B9;0.286684!10820-111C1;0.297176!10484-107A7;0.252251!10808-111A7;0.474626!10169-103B7;0.931032!10153-102I9;0.807099!13425-144D5;0.620904!13433-144E4;0.0113535!13437-144E8;0.0202169!11904-125F5;0.0170993!11905-125F6;0.572826!10039-101F3;0.990609!10791-110H8;0.74408!10017-101C8;0.466992!10045-101F9;0.982527!10509-107D5;0.334139!10839-111E2;0.862471!10692-109F8;0.548449!10079-102A7;0.681824!10078-102A6;0.91051!10721-110A1;0.745689!10569-108B2;0.689558!10570-108B3;0.559343!10571-108B4;0.297559!10647-109A8;0.804014!10752-110D5;0.22758!10782-110G8;0.158186!10726-110A6;0.539006!10018-101C9;0.485403!10086-102B5;0.196641!10182-103D2;0.519672!10165-103B3;0.743993!10499-107C4;0.699797!10408-106B3;0.768045!10019-101D1;0.642627!10068-101I5;0.830866!10075-102A3;0.475733!10077-102A5;0.579275!10727-110A7;0.245467!10775-110G1;0.204039!10412-106B7;0.577014!12231-129F8;0.74285!12232-129F9;0.613778!12233-129G1;0.393302!12234-129G2;0.449249!10414-106B9;0.316059!10170-103B8;0.0797389!10183-103D3;0.77303!10150-102I6;0.749606!10174-103C3;0.734587!10155-103A2;0.685681!10038-101F2;0.56104!10838-111E1;0.729399!10759-110E3;0.0786649!10514-107E1;0.274861!10465-106H6;0.492968!10691-109F7;0.592835!10843-111E6;0.0518032!10844-111E7;0.288038!11747-123G1;0.177308!11748-123G2;0.640254!11749-123G3;0.891745!11750-123G4;0.552316!11751-123G5;0.713778!11840-124H4;0.492844!11752-123G6;0.44321!11753-123G7;0.546089!11754-123G8;0.581751!11755-123G9;0.619143!11756-123H1;0.91371!11833-124G6;0.811907!11760-123H5;0.984802!11836-124G9;0.81158!11758-123H3;0.6966!11835-124G8;0.677452!11762-123H7;0.590916!11838-124H2;0.734691!11757-123H2;0.938371!11759-123H4;0.538025!11761-123H6;0.86385!11842-124H6;0.43028!11837-124H1;0.704214!10568-108B1;0.331108!13230-141I8;0.206491!13231-141I9;0.899621!10696-109G3;0.784579!10493-107B7;0.739991!10494-107B8;0.974731!10850-111F4;0.580284!10851-111F5;0.332577!10852-111F6;0.858265!10853-111F7;0.373209!10854-111F8;0.688795!10855-111F9;0.533333!10856-111G1;0.450557!10847-111F1;0.558911!10846-111E9;0.387764!10848-111F2;0.98685!10845-111E8;0.621285!10857-111G2;0.167278!10858-111G3;0.720323!10156-103A3;0.474294!11901-125F2;0.718539!11902-125F3;0.249086!11903-125F4;0.24159!10689-109F5;0.204869!10648-109A9;0.404492!10784-110H1;0.581259!10744-110C6;0.822823!10772-110F7;0.905879!10474-106I6;0.761548!10600-108E6;0.358934!10684-109E9;0.384706!12226-129F3;0.955507!12227-129F4;0.931262!10508-107D4;0.509031!10539-107G8;0.432333!10607-108F4;0.214534!10555-107I6;0.804189!10774-110F9;0.434767!10637-108I7;0.940906!10663-109C6;0.839039!10728-110A8;0.959705!10729-110A9;0.634114!10430-106D7;0.639463!10730-110B1;0.864383!10813-111B3;0.277445!10812-111B2;0.119495!10037-101F1;0.0467901!10172-103C1;0.723936!10163-103B1;0.830156!10076-102A4;0.73331!10073-102A1;0.785439!10036-101E9;0.345494!10195-103E6;0.753791!10277-104E7;0.793088!10434-106E2;0.833238!10550-107I1;0.209697!10545-107H5;0.932043!10544-107H4;0.814939!10704-109H2;0.650882!10510-107D6;0.950868!10558-107I9;0.47469!10020-101D2;0.786834!10732-110B3;0.581935!10049-101G4;0.974011!10698-109G5;0.22609!10437-106E5;0.271851!10417-106C3;0.560345!10035-101E8;0.806393!10171-103B9;0.824889!10157-103A4;0.673036!10034-101E7;0.774151!10072-101I9;0.783076!10199-103F1;0.318183!10200-103F2;0.903136!10697-109G4;0.864435!10723-110A3;0.821584!10179-103C8;0.586796!10160-103A7;0.587444!10180-103C9;0.452469!10162-103A9;0.83184!10021-101D3;0.783303!10840-111E3;0.32056!10706-109H4;0.870664!10033-101E6;0.883243!10032-101E5;0.742591!10490-107B4;0.768098!10439-106E7;0.389945!10022-101D4;0.377292!10176-103C5;0.902882!10469-106I1;0.626722!10067-101I4;0.415424!10411-106B6;0.665567!10471-106I3;0.960296!10030-101E3;0.53191!10475-106I7;0.567635!10787-110H4;0.196181!10477-106I9;0.941496!10695-109G2;0.244754!11771-123I7;0.0616583!11772-123I8;0.72858!11773-123I9;0.900502!10093-102C3;0.856577!10442-106F1;0.56821!10442-106F1;0.876592!10201-103F3;0.930329!10639-108I9;0.769153!11843-124H7;0.284853!11841-124H5;0.218012!10693-109F9;0.581904!10436-106E4;0.0914842!10483-107A6;0.350281!10282-104F3;0.753885!10023-101D5;0.343683!10066-101I3;0.75367!10065-101I2;0.443348!10800-110I8;0.417123!10610-108F7;0.228007!10841-111E4;0.740554!10541-107H1;0.876977!10842-111E5;0.0715619!10562-108A4;0.549172!10024-101D6;0.192081!10064-101I1;0.834879!10609-108F6;0.389964!10048-101G3;0.822767!10781-110G7;0.286283!10181-103D1;0.958919!10159-103A6;0.659654!10056-101H2;0.503109!10737-110B8;0.364007!10025-101D7;0.954206!10044-101F8;0.432793!10424-106D1;0.648789!10463-106H4;0.975794!10616-108G4;0.913735!10486-107A9;0.694292!10062-101H8;0.759905!10202-103F4;0.840101!10158-103A5;0.708836!10441-106E9;0.555512!10031-101E4;0.170715!10063-101H9;0.72282!10063-101H9;0.452539!11763-123H8;0.920578!11765-123I1;0.684675!11768-123I4;0.547534!10807-111A6;0.586661!10790-110H7;0.0678207!10798-110I6;0.00709591!10786-110H3;0.184157!10591-108D6;0.0139614!10593-108D8;0.00127082!10590-108D5;0.0226368!10026-101D8;0.00207826!10096-102C6;0.236288!10168-103B6;0.277336!10154-103A1;0.744433!10209-103G2;0.561142!10061-101H7;0.758696!10027-101D9;0.211297!10043-101F7;0.161269!10783-110G9;0.104603!10028-101E1;0.555721!10060-101H6;0.889793!10203-103F5;0.253264!10059-101H5;0.600489!10047-101G2;0.536758!10029-101E2;0.632182!10058-101H4;0.885413!10418-106C4;0.587292!10492-107B6;0.26935!10694-109G1;0.938519!10797-110I5;0.447002!10057-101H3;0.218646!10100-102D1;0.642788!10055-101H1;0.613542!10204-103F6;0.293637!10191-103E2;0.662812!10563-108A5;0.838747
|name=CCAATCCGGT,motif823,CNhs11913,T:370.0(14.93%),B:5558.6(8.19%),P:1e-28
|name=CCAATCCGGT,motif823,CNhs11913,T:370.0(14.93%),B:5558.6(8.19%),P:1e-28
|tomtom_result=HAP4#MA0315.1;1;0.000584698;0.278316;0.452988;10;CCAATCCGGT;ACCAATCAGAGGCGA;+!ASH1#MA0276.1;1;0.000951897;0.453103;0.452988;9;CCAATCCGGT;CCCGATCCGG;-!HAP5#MA0316.1;1;0.00154643;0.736103;0.490611;10;CCAATCCGGT;ACCAATCAGATCCCA;-!NFYA#MA0060.1;5;0.00211906;1.00867;0.504209;10;CCAATCCGGT;CTCAGCCAATCAGCGC;+!ASG1#MA0275.1;-3;0.00315442;1.5015;0.60045;6;CCAATCCGGT;TTCCGG;-!MCM1#MA0331.1;3;0.00522707;2.48809;0.745376;9;CCAATCCGGT;TTCCTAATTGGG;-!AG#MA0005.1;1;0.0054821;2.60948;0.745376;10;CCAATCCGGT;CCAAATTTGGT;+!HAP3#MA0314.1;6;0.0073808;3.51326;0.804673;9;CCAATCCGGT;TCTGAACCAATCAGA;-!CAT8#MA0280.1;-3;0.00760913;3.62195;0.804673;6;CCAATCCGGT;TTCCGG;-!AFT1#MA0269.1;0;0.00896721;4.26839;0.853462;10;CCAATCCGGT;CCAATCGGGTGCAATATGTAA;-!GABPA#MA0062.1;0;0.0106747;5.08116;0.923613;10;CCAATCCGGT;CTCTTCCGGT;-!Tcfcp2l1#MA0145.1;5;0.0147457;7.01896;0.999747;9;CCAATCCGGT;CCAGTTCAAACCAG;+!TBS1#MA0404.1;0;0.0194172;9.2426;0.999747;8;CCAATCCGGT;CGGATCCG;+
}}
}}

Latest revision as of 14:02, 7 September 2012

Full Name: CCAATCCGGT,motif823,CNhs11913,T:370.0(14.93%),B:5558.6(8.19%),P:1e-28

Motif matrix
POACGT
127.38309.6932.560.37
219.24326.7123.680.37
3289.7126.6427.3826.27
4286.3812.9540.3330.34
54.8131.8232.93300.44
634.41296.3721.0918.13
767.34258.2625.1619.24
880.6634.04228.6626.64
941.4443.66252.3432.56
100.3745.8823.31300.44

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
HAP4#MA0315.110.0005846980.2783160.45298810CCAATCCGGTACCAATCAGAGGCGA+
ASH1#MA0276.110.0009518970.4531030.4529889CCAATCCGGTCCCGATCCGG-
HAP5#MA0316.110.001546430.7361030.49061110CCAATCCGGTACCAATCAGATCCCA-
NFYA#MA0060.150.002119061.008670.50420910CCAATCCGGTCTCAGCCAATCAGCGC+
ASG1#MA0275.1-30.003154421.50150.600456CCAATCCGGTTTCCGG-
MCM1#MA0331.130.005227072.488090.7453769CCAATCCGGTTTCCTAATTGGG-
AG#MA0005.110.00548212.609480.74537610CCAATCCGGTCCAAATTTGGT+
HAP3#MA0314.160.00738083.513260.8046739CCAATCCGGTTCTGAACCAATCAGA-
CAT8#MA0280.1-30.007609133.621950.8046736CCAATCCGGTTTCCGG-
AFT1#MA0269.100.008967214.268390.85346210CCAATCCGGTCCAATCGGGTGCAATATGTAA-
GABPA#MA0062.100.01067475.081160.92361310CCAATCCGGTCTCTTCCGGT-
Tcfcp2l1#MA0145.150.01474577.018960.9997479CCAATCCGGTCCAGTTCAAACCAG+
TBS1#MA0404.100.01941729.24260.9997478CCAATCCGGTCGGATCCG+
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