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MacroAPE 1083:1-TGAGTCATTTCCT: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;9.66;7.42;12.32;110.6!2;7.84;26.74;91.42;14.0!3;115.5;4.34;7.42;12.74!4;18.76;16.66;94.64;9.94!5;9.52;12.6;10.78;107.1!6;11.2;113.4;6.72;8.6...")
 
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0.0255921!12180-129A2;4.6325e-06!12181-129A3;4.28488e-05!12176-128I7;0.000111931!12177-128I8;6.87671e-05!12182-129A4;7.35816e-05!12183-129A5;1.34687e-05!12184-129A6;7.39276e-05!10809-111A8;0.000168694!10597-108E3;0.0411848!10717-109I6;0.00498507!10455-106G5;0.0553086!10534-107G3;0.646599!10429-106D6;0.432803!10464-106H5;0.526922!10827-111C8;0.120735!10789-110H6;0.395363!10828-111C9;0.188583!10788-110H5;0.00648374!10792-110H9;0.59363!10765-110E9;0.124246!10829-111D1;0.911037!10830-111D2;0.271956!10831-111D3;0.153871!10832-111D4;0.23208!10833-111D5;0.571721!10764-110E8;0.927986!10770-110F5;0.462597!10399-106A3;0.153087!10400-106A4;0.724855!10405-106A9;0.703327!10834-111D6;0.567427!10835-111D7;0.0690534!10836-111D8;0.863677!10837-111D9;0.926057!10699-109G6;0.387945!10802-111A1;0.127612!10796-110I4;0.41757!10010-101C1;0.000100299!10810-111A9;0.446278!10421-106C7;4.6503e-06!10708-109H6;0.359673!12235-129G3;0.0021684!12236-129G4;0.745239!12237-129G5;0.139067!10167-103B5;0.518866!10151-102I7;0.0844953!10428-106D5;0.0894999!10795-110I3;0.434098!10805-111A4;0.652799!10052-101G7;5.51105e-10!10189-103D9;0.958262!10589-108D4;0.380858!10425-106D2;0.000104691!10427-106D4;0.0748754!10702-109G9;0.31712!10432-106D9;0.737975!10496-107C1;0.715859!10718-109I7;0.118503!10011-101C2;0.498912!10053-101G8;0.495236!10686-109F2;0.00219975!10084-102B3;0.556905!10012-101C3;0.021364!10085-102B4;0.254493!10482-107A5;0.00126809!10419-106C5;0.000155449!10080-102A8;1.84492e-05!10760-110E4;0.826399!10709-109H7;0.113243!10710-109H8;0.000802183!10703-109H1;0.00469093!10719-109I8;0.00018048!10642-109A3;0.0006665!10177-103C6;4.98877e-05!10164-103B2;0.0721801!10173-103C2;0.0599406!10166-103B4;0.00939244!10083-102B2;0.00282076!10188-103D8;0.000999054!10552-107I3;0.0791945!10553-107I4;0.00529348!10013-101C4;0.0485235!10536-107G5;0.544982!10618-108G6;0.861087!10423-106C9;0.000689139!10785-110H2;0.0670719!12238-129G6;0.00890593!12239-129G7;0.528871!12240-129G8;0.91004!10416-106C2;0.169439!10801-110I9;0.386546!10766-110F1;0.0210976!10824-111C5;0.188647!10825-111C6;0.801714!10826-111C7;0.859324!10454-106G4;0.948564!10409-106B4;0.309578!10638-108I8;0.334418!10636-108I6;0.112039!10513-107D9;0.089678!10420-106C6;0.000212102!10082-102B1;3.80413e-05!10014-101C5;0.0633406!10070-101I7;0.508921!10452-106G2;0.351863!10453-106G3;0.847884!10449-106F8;0.806686!10042-101F6;0.803615!10069-101I6;0.285201!10193-103E4;0.058902!10631-108I1;0.136402!10438-106E6;0.695476!10488-107B2;0.279953!10196-103E7;0.138936!10071-101I8;0.158338!10071-101I8;0.454065!10041-101F5;0.00575983!10451-106G1;0.512098!10450-106F9;0.018378!10604-108F1;0.000129594!10605-108F2;0.195902!10606-108F3;0.283142!10603-108E9;0.114413!10497-107C2;0.180915!10448-106F7;0.0738689!10643-109A4;0.609932!10426-106D3;0.0863599!10431-106D8;0.379575!10197-103E8;0.466081!10443-106F2;0.439837!10815-111B5;0.256834!10816-111B6;0.00638067!10817-111B7;0.0114062!10015-101C6;0.00871559!10410-106B5;0.844962!10054-101G9;0.0568842!10758-110E2;0.0154416!10711-109H9;0.0156276!10040-101F4;0.257425!10470-106I2;0.0441786!10415-106C1;0.00601222!10198-103E9;0.979619!10614-108G2;0.655416!10612-108F9;0.0805504!10549-107H9;0.00033064!10615-108G3;1.41683e-05!10487-107B1;5.54986e-05!10433-106E1;0.945535!10688-109F4;0.860219!10444-106F3;0.194127!10444-106F3;0.898416!10485-107A8;0.982026!10413-106B8;0.012232!10175-103C4;0.0739822!10161-103A8;0.168996!12131-128D7;0.342652!10624-108H3;0.37917!10712-109I1;0.677922!10205-103F7;0.689943!10206-103F8;0.597026!10207-103F9;0.099972!10050-101G5;0.287109!10051-101G6;0.000973204!10016-101C7;0.0176031!10046-101G1;0.138077!10778-110G4;0.069997!10633-108I3;0.918991!10818-111B8;0.000133187!10819-111B9;5.6158e-05!10820-111C1;0.00011712!10484-107A7;9.12838e-05!10808-111A7;0.0110439!10169-103B7;0.847848!10153-102I9;0.13132!13425-144D5;0.14002!13433-144E4;0.000295996!13437-144E8;0.000548583!11904-125F5;6.45089e-05!11905-125F6;0.0116866!10039-101F3;0.0415949!10791-110H8;0.0344319!10017-101C8;0.000868454!10045-101F9;0.425165!10509-107D5;0.0455841!10839-111E2;0.726751!10692-109F8;0.0799739!10079-102A7;0.0363924!10078-102A6;0.14284!10721-110A1;0.186008!10569-108B2;0.000113464!10570-108B3;0.798196!10571-108B4;0.645793!10647-109A8;0.805105!10752-110D5;0.342207!10782-110G8;0.207182!10726-110A6;0.431702!10018-101C9;0.0610095!10086-102B5;0.039586!10182-103D2;0.241445!10165-103B3;0.468903!10499-107C4;0.310452!10408-106B3;0.00392546!10019-101D1;0.186686!10068-101I5;0.308958!10075-102A3;0.869521!10077-102A5;0.439001!10727-110A7;0.0279514!10775-110G1;0.364983!10412-106B7;0.457295!12231-129F8;0.548765!12232-129F9;0.816297!12233-129G1;0.710691!12234-129G2;0.967771!10414-106B9;0.716369!10170-103B8;5.64406e-06!10183-103D3;0.0754471!10150-102I6;0.175376!10174-103C3;0.193044!10155-103A2;0.343775!10038-101F2;0.287165!10838-111E1;0.437867!10759-110E3;1.86174e-08!10514-107E1;0.166668!10465-106H6;0.19194!10691-109F7;0.149124!10843-111E6;0.27883!10844-111E7;7.19648e-05!11747-123G1;0.00185449!11748-123G2;0.581517!11749-123G3;0.950402!11750-123G4;0.214086!11751-123G5;0.599258!11840-124H4;0.920285!11752-123G6;0.745859!11753-123G7;0.221687!11754-123G8;0.295982!11755-123G9;0.431764!11756-123H1;0.213758!11833-124G6;0.0315032!11760-123H5;0.0322505!11836-124G9;0.081593!11758-123H3;0.376328!11835-124G8;0.103359!11762-123H7;0.0903749!11838-124H2;0.186627!11757-123H2;0.146102!11759-123H4;0.163251!11761-123H6;0.167978!11842-124H6;0.0849237!11837-124H1;0.110625!10568-108B1;0.0549248!13230-141I8;0.0174594!13231-141I9;0.977817!10696-109G3;0.893406!10493-107B7;0.825835!10494-107B8;0.192502!10850-111F4;0.00718198!10851-111F5;0.000171277!10852-111F6;0.634968!10853-111F7;0.870528!10854-111F8;0.0709373!10855-111F9;0.240045!10856-111G1;0.0165877!10847-111F1;0.0795613!10846-111E9;0.816035!10848-111F2;0.992512!10845-111E8;0.690355!10857-111G2;0.0863852!10858-111G3;0.0222279!10156-103A3;0.831511!11901-125F2;0.21043!11902-125F3;0.310292!11903-125F4;0.416196!10689-109F5;0.417093!10648-109A9;0.130578!10784-110H1;0.00775709!10744-110C6;0.928191!10772-110F7;0.252438!10474-106I6;0.357449!10600-108E6;0.10797!10684-109E9;0.165975!12226-129F3;0.951609!12227-129F4;0.948038!10508-107D4;0.064968!10539-107G8;0.000160627!10607-108F4;0.000137013!10555-107I6;3.09849e-06!10774-110F9;9.45509e-06!10637-108I7;0.00456704!10663-109C6;3.80132e-05!10728-110A8;0.00698328!10729-110A9;0.0125855!10430-106D7;0.944458!10730-110B1;0.174268!10813-111B3;0.000336403!10812-111B2;0.127917!10037-101F1;0.393078!10172-103C1;0.0564624!10163-103B1;0.0671032!10076-102A4;0.165028!10073-102A1;0.0544673!10036-101E9;0.00295348!10195-103E6;0.0211882!10277-104E7;0.0819922!10434-106E2;0.626065!10550-107I1;0.065136!10545-107H5;0.00101876!10544-107H4;0.720144!10704-109H2;0.139339!10510-107D6;0.437593!10558-107I9;0.417332!10020-101D2;0.0033888!10732-110B3;0.509991!10049-101G4;0.657299!10698-109G5;0.00462909!10437-106E5;0.0350879!10417-106C3;0.991755!10035-101E8;0.625069!10171-103B9;0.0438219!10157-103A4;0.0742646!10034-101E7;0.132617!10072-101I9;0.0496762!10199-103F1;0.00187146!10200-103F2;0.0726798!10697-109G4;0.356793!10723-110A3;0.00039754!10179-103C8;0.104446!10160-103A7;0.00112128!10180-103C9;6.9746e-05!10162-103A9;0.0766726!10021-101D3;0.0281686!10840-111E3;0.473704!10706-109H4;0.328774!10033-101E6;0.272679!10032-101E5;0.306547!10490-107B4;0.0353666!10439-106E7;0.000175481!10022-101D4;0.0662833!10176-103C5;0.512061!10469-106I1;0.0517231!10067-101I4;0.015064!10411-106B6;0.0405403!10471-106I3;0.871544!10030-101E3;0.0714811!10475-106I7;0.017643!10787-110H4;3.11028e-09!10477-106I9;1.20807e-05!10695-109G2;0.000956525!11771-123I7;0.264478!11772-123I8;0.891051!11773-123I9;0.0909732!10093-102C3;0.162913!10442-106F1;0.110376!10442-106F1;0.419187!10201-103F3;0.332618!10639-108I9;0.314803!11843-124H7;0.00943559!11841-124H5;0.589676!10693-109F9;0.821301!10436-106E4;0.0162089!10483-107A6;0.205927!10282-104F3;0.372288!10023-101D5;0.0873684!10066-101I3;0.155569!10065-101I2;0.0160265!10800-110I8;0.243989!10610-108F7;0.000170681!10841-111E4;0.000628689!10541-107H1;3.04792e-06!10842-111E5;0.00104091!10562-108A4;0.000126193!10024-101D6;0.0321903!10064-101I1;0.902074!10609-108F6;0.224327!10048-101G3;0.360065!10781-110G7;0.62849!10181-103D1;0.0521124!10159-103A6;0.553975!10056-101H2;0.737793!10737-110B8;0.0345064!10025-101D7;0.573048!10044-101F8;0.0936846!10424-106D1;0.366737!10463-106H4;0.426195!10616-108G4;0.0529994!10486-107A9;0.0986601!10062-101H8;0.224258!10202-103F4;0.319835!10158-103A5;0.253769!10441-106E9;0.485017!10031-101E4;1.65972e-08!10063-101H9;0.0353544!10063-101H9;0.00126394!11763-123H8;0.469257!11765-123I1;0.914566!11768-123I4;0.490795!10807-111A6;0.562181!10790-110H7;0.00405023!10798-110I6;0.00139835!10786-110H3;5.02045e-05!10591-108D6;0.114993!10593-108D8;0.0398!10590-108D5;0.524555!10026-101D8;0.00431768!10096-102C6;0.00124031!10168-103B6;5.17243e-14!10154-103A1;0.0926528!10209-103G2;0.275514!10061-101H7;0.477905!10027-101D9;0.0146828!10043-101F7;0.398665!10783-110G9;0.545154!10028-101E1;0.01593!10060-101H6;0.217449!10203-103F5;0.036788!10059-101H5;0.234016!10047-101G2;0.0351268!10029-101E2;0.199124!10058-101H4;0.288971!10418-106C4;0.172216!10492-107B6;0.0683236!10694-109G1;0.00497983!10797-110I5;0.181378!10057-101H3;0.361417!10100-102D1;0.201798!10055-101H1;0.594948!10204-103F6;0.115332!10191-103E2;0.523099!10563-108A5;0.402937
|name=1-TGAGTCATTTCCT,CNhs10837,BestGuess:BATF_si_HM09(0.744616642587065),T:140.0(15.12%),B:2484.2(5.17%),P:1e-28
|name=1-TGAGTCATTTCCT,CNhs10837,BestGuess:BATF_si_HM09(0.744616642587065),T:140.0(15.12%),B:2484.2(5.17%),P:1e-28
|tomtom_result=AP1#MA0099.2;0;7.48001e-05;0.0356049;0.070891;7;TGAGTCATTTCCT;TGAGTCA;-!GCN4#MA0303.1;7;0.000670337;0.319081;0.258261;13;TGAGTCATTTCCT;TGAAGTATGACTCATCCCTTG;-!ARG81#MA0272.1;0;0.000993922;0.473107;0.258261;8;TGAGTCATTTCCT;AGAGTCAC;-!Fos#MA0099.1;0;0.00172856;0.822792;0.258261;8;TGAGTCATTTCCT;TGACTCAC;-!FEV#MA0156.1;-6;0.00181599;0.864409;0.258261;7;TGAGTCATTTCCT;ATTTCCTG;-!SPI1#MA0080.2;-6;0.00289157;1.37639;0.342557;7;TGAGTCATTTCCT;ACTTCCT;-!ELF5#MA0136.1;-5;0.00469407;2.23438;0.494306;8;TGAGTCATTTCCT;TACTTCCTT;+!NFE2L1::MafG#MA0089.1;-3;0.00783246;3.72825;0.630131;6;TGAGTCATTTCCT;GTCATG;-!NFE2L2#MA0150.1;3;0.00797855;3.79779;0.630131;8;TGAGTCATTTCCT;TGCTGAGTCAT;-!ABF1#MA0265.1;-1;0.0093475;4.44941;0.652284;12;TGAGTCATTTCCT;ATATCACTTTATACGA;-!z#MA0255.1;1;0.00963554;4.58652;0.652284;9;TGAGTCATTTCCT;TTGAGTGATT;+!ETS1#MA0098.1;-7;0.0106991;5.09277;0.65279;6;TGAGTCATTTCCT;CTTCCG;+!Gfi#MA0038.1;-1;0.0110206;5.2458;0.65279;10;TGAGTCATTTCCT;CAGTGATTTG;-!ARG80#MA0271.1;-1;0.0188201;8.95837;0.995524;6;TGAGTCATTTCCT;GCGTCT;-!Pax2#MA0067.1;-2;0.0195815;9.32081;0.995524;8;TGAGTCATTTCCT;AGTCACGG;+!STAT1#MA0137.1;1;0.0209474;9.97097;0.995524;13;TGAGTCATTTCCT;CAGTTTCATTTTCC;-
}}
}}

Latest revision as of 13:57, 7 September 2012

Full Name: 1-TGAGTCATTTCCT,CNhs10837,BestGuess:BATF_si_HM09(0.744616642587065),T:140.0(15.12%),B:2484.2(5.17%),P:1e-28

Motif matrix
POACGT
19.667.4212.32110.6
27.8426.7491.4214.0
3115.54.347.4212.74
418.7616.6694.649.94
59.5212.610.78107.1
611.2113.46.728.68
7111.0214.04.3410.64
86.7216.813.16103.32
913.447.846.72112.0
106.7211.767.42114.1
117.7102.6212.0417.64
125.6111.164.4818.76
1311.211.93.36113.54

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
AP1#MA0099.207.48001e-050.03560490.0708917TGAGTCATTTCCTTGAGTCA-
GCN4#MA0303.170.0006703370.3190810.25826113TGAGTCATTTCCTTGAAGTATGACTCATCCCTTG-
ARG81#MA0272.100.0009939220.4731070.2582618TGAGTCATTTCCTAGAGTCAC-
Fos#MA0099.100.001728560.8227920.2582618TGAGTCATTTCCTTGACTCAC-
FEV#MA0156.1-60.001815990.8644090.2582617TGAGTCATTTCCTATTTCCTG-
SPI1#MA0080.2-60.002891571.376390.3425577TGAGTCATTTCCTACTTCCT-
ELF5#MA0136.1-50.004694072.234380.4943068TGAGTCATTTCCTTACTTCCTT+
NFE2L1::MafG#MA0089.1-30.007832463.728250.6301316TGAGTCATTTCCTGTCATG-
NFE2L2#MA0150.130.007978553.797790.6301318TGAGTCATTTCCTTGCTGAGTCAT-
ABF1#MA0265.1-10.00934754.449410.65228412TGAGTCATTTCCTATATCACTTTATACGA-
z#MA0255.110.009635544.586520.6522849TGAGTCATTTCCTTTGAGTGATT+
ETS1#MA0098.1-70.01069915.092770.652796TGAGTCATTTCCTCTTCCG+
Gfi#MA0038.1-10.01102065.24580.6527910TGAGTCATTTCCTCAGTGATTTG-
ARG80#MA0271.1-10.01882018.958370.9955246TGAGTCATTTCCTGCGTCT-
Pax2#MA0067.1-20.01958159.320810.9955248TGAGTCATTTCCTAGTCACGG+
STAT1#MA0137.110.02094749.970970.99552413TGAGTCATTTCCTCAGTTTCATTTTCC-
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