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MacroAPE 1083:8-GGHAACT: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;151.878;53.604;1049.745;233.773!2;1.489;1.489;1484.533;1.489!3;531.573;477.969;1.489;479.458!4;1106.327;1.489;379.695;1.489!5;1484.533;1.489...")
 
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674954!10788-110H5;0.752314!10792-110H9;0.357776!10765-110E9;0.391559!10829-111D1;0.162699!10830-111D2;0.796438!10831-111D3;0.0978393!10832-111D4;0.138937!10833-111D5;0.663703!10764-110E8;0.917673!10770-110F5;0.801482!10399-106A3;0.756168!10400-106A4;0.920055!10405-106A9;0.995924!10834-111D6;0.29828!10835-111D7;0.961981!10836-111D8;0.807575!10837-111D9;0.681093!10699-109G6;0.779421!10802-111A1;0.877482!10796-110I4;0.252401!10010-101C1;0.774834!10810-111A9;0.637625!10421-106C7;0.870292!10708-109H6;0.499222!12235-129G3;0.368707!12236-129G4;0.0457333!12237-129G5;0.342979!10167-103B5;0.0186236!10151-102I7;0.962693!10428-106D5;0.917397!10795-110I3;0.0770717!10805-111A4;0.954916!10052-101G7;0.834972!10189-103D9;0.578232!10589-108D4;0.455408!10425-106D2;0.86738!10427-106D4;0.411615!10702-109G9;0.808992!10432-106D9;0.270164!10496-107C1;0.29948!10718-109I7;0.278815!10011-101C2;0.469541!10053-101G8;0.417297!10686-109F2;0.761419!10084-102B3;0.636189!10012-101C3;0.299497!10085-102B4;0.553927!10482-107A5;0.287239!10419-106C5;0.797674!10080-102A8;0.552596!10760-110E4;0.115315!10709-109H7;0.525166!10710-109H8;0.998922!10703-109H1;0.424215!10719-109I8;0.283944!10642-109A3;0.683228!10177-103C6;0.838464!10164-103B2;0.454764!10173-103C2;0.835208!10166-103B4;0.650413!10083-102B2;0.700654!10188-103D8;0.226924!10552-107I3;0.885717!10553-107I4;0.672004!10013-101C4;0.240595!10536-107G5;0.432519!10618-108G6;0.523377!10423-106C9;0.619111!10785-110H2;0.922833!12238-129G6;0.864468!12239-129G7;0.00697412!12240-129G8;0.828037!10416-106C2;0.0221605!10801-110I9;0.993949!10766-110F1;0.63722!10824-111C5;0.502492!10825-111C6;0.936409!10826-111C7;0.914229!10454-106G4;0.989462!10409-106B4;0.98665!10638-108I8;0.923236!10636-108I6;0.6699!10513-107D9;0.231982!10420-106C6;0.540947!10082-102B1;0.869645!10014-101C5;0.641443!10070-101I7;0.983412!10452-106G2;0.922953!10453-106G3;0.216938!10449-106F8;0.78293!10042-101F6;0.92605!10069-101I6;0.781715!10193-103E4;0.744392!10631-108I1;0.88234!10438-106E6;0.583777!10488-107B2;0.144512!10196-103E7;0.988995!10071-101I8;0.599497!10071-101I8;0.813694!10041-101F5;0.702933!10451-106G1;0.911596!10450-106F9;0.427986!10604-108F1;0.584915!10605-108F2;0.304673!10606-108F3;0.240073!10603-108E9;0.208321!10497-107C2;0.304032!10448-106F7;0.437244!10643-109A4;0.691462!10426-106D3;0.252771!10431-106D8;0.178422!10197-103E8;0.291903!10443-106F2;0.652415!10815-111B5;0.933272!10816-111B6;0.784985!10817-111B7;0.624982!10015-101C6;0.816172!10410-106B5;0.728364!10054-101G9;0.473218!10758-110E2;0.649635!10711-109H9;0.725319!10040-101F4;0.222409!10470-106I2;0.728491!10415-106C1;0.375649!10198-103E9;0.387904!10614-108G2;0.674605!10612-108F9;0.626004!10549-107H9;0.842003!10615-108G3;0.69071!10487-107B1;0.997529!10433-106E1;0.896728!10688-109F4;0.515042!10444-106F3;0.179249!10444-106F3;0.544198!10485-107A8;0.780748!10413-106B8;0.692836!10175-103C4;0.495582!10161-103A8;0.955796!12131-128D7;0.869609!10624-108H3;0.671562!10712-109I1;0.806235!10205-103F7;0.489234!10206-103F8;0.687208!10207-103F9;0.975543!10050-101G5;0.24577!10051-101G6;0.700005!10016-101C7;0.836135!10046-101G1;0.963!10778-110G4;0.631826!10633-108I3;0.187501!10818-111B8;0.543483!10819-111B9;0.734959!10820-111C1;0.706565!10484-107A7;0.816094!10808-111A7;0.76904!10169-103B7;0.68372!10153-102I9;0.873655!13425-144D5;0.883981!13433-144E4;0.365637!13437-144E8;0.355969!11904-125F5;0.433898!11905-125F6;0.275626!10039-101F3;0.179949!10791-110H8;0.720782!10017-101C8;0.940267!10045-101F9;0.547843!10509-107D5;0.564319!10839-111E2;0.981331!10692-109F8;0.535363!10079-102A7;0.301884!10078-102A6;0.740812!10721-110A1;0.92302!10569-108B2;0.877071!10570-108B3;0.775668!10571-108B4;0.20615!10647-109A8;0.98849!10752-110D5;0.129557!10782-110G8;0.423933!10726-110A6;0.115466!10018-101C9;0.76406!10086-102B5;0.249309!10182-103D2;0.374905!10165-103B3;0.816315!10499-107C4;0.88065!10408-106B3;0.407803!10019-101D1;0.259322!10068-101I5;0.254823!10075-102A3;0.0137333!10077-102A5;0.356795!10727-110A7;0.766831!10775-110G1;0.607566!10412-106B7;0.701116!12231-129F8;0.117288!12232-129F9;0.0252901!12233-129G1;0.0403454!12234-129G2;0.0116242!10414-106B9;0.00610898!10170-103B8;0.288484!10183-103D3;0.94679!10150-102I6;0.932753!10174-103C3;0.992115!10155-103A2;0.698156!10038-101F2;0.561986!10838-111E1;0.848913!10759-110E3;0.959167!10514-107E1;0.89482!10465-106H6;0.433192!10691-109F7;0.479459!10843-111E6;0.493261!10844-111E7;0.78585!11747-123G1;0.583508!11748-123G2;0.596236!11749-123G3;0.710424!11750-123G4;0.221716!11751-123G5;0.397878!11840-124H4;0.508158!11752-123G6;0.709746!11753-123G7;0.606521!11754-123G8;0.72843!11755-123G9;0.613618!11756-123H1;0.233185!11833-124G6;0.364728!11760-123H5;0.0609567!11836-124G9;0.127451!11758-123H3;0.23857!11835-124G8;0.815009!11762-123H7;0.900118!11838-124H2;0.953194!11757-123H2;0.797648!11759-123H4;0.152528!11761-123H6;0.572335!11842-124H6;0.170809!11837-124H1;0.146315!10568-108B1;0.87793!13230-141I8;0.215504!13231-141I9;0.583507!10696-109G3;0.572055!10493-107B7;0.654155!10494-107B8;0.418945!10850-111F4;0.577156!10851-111F5;0.0681855!10852-111F6;0.899268!10853-111F7;0.64057!10854-111F8;0.981281!10855-111F9;0.729283!10856-111G1;0.162514!10847-111F1;0.119244!10846-111E9;0.320466!10848-111F2;0.277794!10845-111E8;0.692685!10857-111G2;0.826795!10858-111G3;0.446788!10156-103A3;0.521486!11901-125F2;0.98656!11902-125F3;0.838878!11903-125F4;0.752773!10689-109F5;0.591928!10648-109A9;0.520135!10784-110H1;0.765491!10744-110C6;0.55002!10772-110F7;0.977073!10474-106I6;0.574108!10600-108E6;0.958435!10684-109E9;0.592262!12226-129F3;0.295102!12227-129F4;0.41153!10508-107D4;0.509802!10539-107G8;0.359687!10607-108F4;0.434987!10555-107I6;0.983506!10774-110F9;0.514717!10637-108I7;0.658867!10663-109C6;0.594201!10728-110A8;0.998235!10729-110A9;0.984905!10430-106D7;0.448085!10730-110B1;0.855839!10813-111B3;0.192129!10812-111B2;0.784094!10037-101F1;0.0289373!10172-103C1;0.841897!10163-103B1;0.833482!10076-102A4;0.985266!10073-102A1;0.640462!10036-101E9;0.595556!10195-103E6;0.502837!10277-104E7;0.611716!10434-106E2;0.243294!10550-107I1;0.984402!10545-107H5;0.745703!10544-107H4;0.94596!10704-109H2;0.965972!10510-107D6;0.980943!10558-107I9;0.534897!10020-101D2;0.471846!10732-110B3;0.269037!10049-101G4;0.501513!10698-109G5;0.161178!10437-106E5;0.796571!10417-106C3;0.664577!10035-101E8;0.110127!10171-103B9;0.695042!10157-103A4;0.894991!10034-101E7;0.898168!10072-101I9;0.647524!10199-103F1;0.855955!10200-103F2;0.825813!10697-109G4;0.863675!10723-110A3;0.358315!10179-103C8;0.29157!10160-103A7;0.521051!10180-103C9;0.718234!10162-103A9;0.496228!10021-101D3;0.225397!10840-111E3;0.0696781!10706-109H4;0.699998!10033-101E6;0.159005!10032-101E5;0.787672!10490-107B4;0.490037!10439-106E7;0.986994!10022-101D4;0.485332!10176-103C5;0.485296!10469-106I1;0.893206!10067-101I4;0.737569!10411-106B6;0.825044!10471-106I3;0.847654!10030-101E3;0.853218!10475-106I7;0.969105!10787-110H4;0.486457!10477-106I9;0.735477!10695-109G2;0.384504!11771-123I7;0.883504!11772-123I8;0.375779!11773-123I9;0.377864!10093-102C3;0.194875!10442-106F1;0.67784!10442-106F1;0.505623!10201-103F3;0.0697808!10639-108I9;0.588098!11843-124H7;0.170808!11841-124H5;0.50837!10693-109F9;0.865056!10436-106E4;0.383766!10483-107A6;0.702432!10282-104F3;0.889431!10023-101D5;0.742995!10066-101I3;0.831129!10065-101I2;0.493754!10800-110I8;0.829671!10610-108F7;0.496225!10841-111E4;0.53223!10541-107H1;0.284524!10842-111E5;0.737761!10562-108A4;0.442413!10024-101D6;0.421733!10064-101I1;0.631359!10609-108F6;0.453111!10048-101G3;0.775662!10781-110G7;0.660666!10181-103D1;0.320162!10159-103A6;0.876395!10056-101H2;0.928853!10737-110B8;0.693684!10025-101D7;0.510575!10044-101F8;0.900609!10424-106D1;0.996989!10463-106H4;0.923358!10616-108G4;0.338809!10486-107A9;0.727383!10062-101H8;0.79629!10202-103F4;0.907505!10158-103A5;0.873817!10441-106E9;0.69638!10031-101E4;0.728705!10063-101H9;0.489416!10063-101H9;0.717622!11763-123H8;0.937017!11765-123I1;0.55776!11768-123I4;0.347981!10807-111A6;0.230857!10790-110H7;0.126891!10798-110I6;0.753706!10786-110H3;0.165681!10591-108D6;0.317333!10593-108D8;0.56608!10590-108D5;0.330313!10026-101D8;0.615806!10096-102C6;0.0466576!10168-103B6;0.124937!10154-103A1;0.876355!10209-103G2;0.931774!10061-101H7;0.496105!10027-101D9;0.800217!10043-101F7;0.528665!10783-110G9;0.266364!10028-101E1;0.97615!10060-101H6;0.341109!10203-103F5;0.592282!10059-101H5;0.630157!10047-101G2;0.737242!10029-101E2;0.691284!10058-101H4;0.138887!10418-106C4;0.629986!10492-107B6;0.156043!10694-109G1;0.792648!10797-110I5;0.990747!10057-101H3;0.736775!10100-102D1;0.741607!10055-101H1;0.260403!10204-103F6;0.349789!10191-103E2;0.0709946!10563-108A5;0.868229
|name=8-GGHAACT,CNhs12352,BestGuess:NFAC4_f1_HM09(0.719160110107676),T:1489.0(47.77%),B:16565.8(37.20%),P:1e-32
|name=8-GGHAACT,CNhs12352,BestGuess:NFAC4_f1_HM09(0.719160110107676),T:1489.0(47.77%),B:16565.8(37.20%),P:1e-32
|tomtom_result=THI2#MA0407.1;0;0.000193281;0.0920016;0.184003;7;GGAAACT;GGAAACTCTAAGAAC;+!RFX1#MA0365.1;1;0.00306436;1.45863;1;7;GGAAACT;TGGCAACC;-!REB1#MA0363.1;3;0.00315986;1.50409;1;6;GGAAACT;CCGGGTAAC;-!RELA#MA0107.1;0;0.00504528;2.40155;1;7;GGAAACT;GGAAATTCCC;-!Su(H)#MA0085.1;5;0.00558431;2.65813;1;7;GGAAACT;CTGTGGGAAACGAGAT;+!YRM1#MA0438.1;2;0.0163604;7.78756;1;6;GGAAACT;ACGGAAAT;+!ARO80#MA0273.1;10;0.0170455;8.11364;1;7;GGAAACT;GATAATTCTCGGCAAGTATGT;+!STAT1#MA0137.2;8;0.0178292;8.48672;1;7;GGAAACT;CATTTCCCGGAAACC;+!STAT1#MA0137.2;6;0.0181945;8.6606;1;7;GGAAACT;GGAAAACGAAACTG;+
}}
}}

Latest revision as of 13:38, 7 September 2012

Full Name: 8-GGHAACT,CNhs12352,BestGuess:NFAC4_f1_HM09(0.719160110107676),T:1489.0(47.77%),B:16565.8(37.20%),P:1e-32

Motif matrix
POACGT
1151.87853.6041049.745233.773
21.4891.4891484.5331.489
3531.573477.9691.489479.458
41106.3271.489379.6951.489
51484.5331.4891.4891.489
61.4891082.5031.489403.519
71.48956.582537.529893.4

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
THI2#MA0407.100.0001932810.09200160.1840037GGAAACTGGAAACTCTAAGAAC+
RFX1#MA0365.110.003064361.4586317GGAAACTTGGCAACC-
REB1#MA0363.130.003159861.5040916GGAAACTCCGGGTAAC-
RELA#MA0107.100.005045282.4015517GGAAACTGGAAATTCCC-
Su(H)#MA0085.150.005584312.6581317GGAAACTCTGTGGGAAACGAGAT+
YRM1#MA0438.120.01636047.7875616GGAAACTACGGAAAT+
ARO80#MA0273.1100.01704558.1136417GGAAACTGATAATTCTCGGCAAGTATGT+
STAT1#MA0137.280.01782928.4867217GGAAACTCATTTCCCGGAAACC+
STAT1#MA0137.260.01819458.660617GGAAACTGGAAAACGAAACTG+
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