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MacroAPE 1083:6-CGHYWRA: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;245.088;683.376;1.104;174.432!2;1.104;1.104;1100.688;1.104!3;353.28;397.44;1.104;351.072!4;259.44;427.248;81.696;334.512!5;518.88;1.104;204....")
 
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739!10429-106D6;0.391564!10464-106H5;0.496885!10827-111C8;0.6913!10789-110H6;0.143684!10828-111C9;0.186168!10788-110H5;0.700809!10792-110H9;0.68398!10765-110E9;0.458011!10829-111D1;0.443758!10830-111D2;0.491578!10831-111D3;0.239311!10832-111D4;0.329535!10833-111D5;0.245631!10764-110E8;0.268522!10770-110F5;0.243136!10399-106A3;0.597312!10400-106A4;0.239559!10405-106A9;0.213988!10834-111D6;0.184949!10835-111D7;0.451656!10836-111D8;0.0522526!10837-111D9;0.0934136!10699-109G6;0.450651!10802-111A1;0.184124!10796-110I4;0.207048!10010-101C1;0.182711!10810-111A9;0.32428!10421-106C7;0.568616!10708-109H6;0.33108!12235-129G3;0.0868496!12236-129G4;0.179647!12237-129G5;0.873205!10167-103B5;0.715452!10151-102I7;0.103807!10428-106D5;0.0999233!10795-110I3;0.217064!10805-111A4;0.693226!10052-101G7;0.419336!10189-103D9;0.898584!10589-108D4;0.787107!10425-106D2;0.125784!10427-106D4;8.17495e-05!10702-109G9;0.469869!10432-106D9;0.986807!10496-107C1;0.05526!10718-109I7;0.511534!10011-101C2;0.344954!10053-101G8;0.426546!10686-109F2;0.0289227!10084-102B3;2.86901e-07!10012-101C3;0.0187256!10085-102B4;0.0174798!10482-107A5;0.0297501!10419-106C5;0.870602!10080-102A8;0.401512!10760-110E4;0.563352!10709-109H7;0.337129!10710-109H8;0.427797!10703-109H1;0.96761!10719-109I8;0.703098!10642-109A3;0.296145!10177-103C6;0.0063945!10164-103B2;0.0168314!10173-103C2;0.0261365!10166-103B4;0.130092!10083-102B2;0.498315!10188-103D8;0.0970746!10552-107I3;0.0438062!10553-107I4;0.315506!10013-101C4;0.875264!10536-107G5;0.645803!10618-108G6;0.168392!10423-106C9;0.353434!10785-110H2;0.16852!12238-129G6;0.314122!12239-129G7;0.419885!12240-129G8;0.140796!10416-106C2;0.713969!10801-110I9;0.636446!10766-110F1;0.282835!10824-111C5;0.141734!10825-111C6;0.0667363!10826-111C7;0.0373324!10454-106G4;0.0499629!10409-106B4;0.0989928!10638-108I8;0.291801!10636-108I6;0.154182!10513-107D9;0.069098!10420-106C6;0.0620852!10082-102B1;0.442313!10014-101C5;0.475912!10070-101I7;0.420262!10452-106G2;0.333149!10453-106G3;0.122265!10449-106F8;0.0584592!10042-101F6;0.0711256!10069-101I6;0.0988491!10193-103E4;0.381783!10631-108I1;0.00555938!10438-106E6;0.218814!10488-107B2;0.450503!10196-103E7;0.249914!10071-101I8;0.784216!10071-101I8;0.223314!10041-101F5;0.124547!10451-106G1;0.831473!10450-106F9;0.29736!10604-108F1;0.216279!10605-108F2;0.321684!10606-108F3;0.661425!10603-108E9;0.33495!10497-107C2;0.129923!10448-106F7;0.470684!10643-109A4;0.0281714!10426-106D3;0.572588!10431-106D8;0.0551577!10197-103E8;0.0756956!10443-106F2;0.937154!10815-111B5;0.766679!10816-111B6;0.0604348!10817-111B7;0.0291758!10015-101C6;0.0839603!10410-106B5;0.557825!10054-101G9;0.552973!10758-110E2;0.369816!10711-109H9;0.0919705!10040-101F4;0.176905!10470-106I2;0.0182026!10415-106C1;0.113399!10198-103E9;0.686361!10614-108G2;0.669593!10612-108F9;0.542142!10549-107H9;0.820378!10615-108G3;0.776273!10487-107B1;0.170984!10433-106E1;0.973872!10688-109F4;0.91521!10444-106F3;0.168881!10444-106F3;0.0565732!10485-107A8;0.173582!10413-106B8;4.10788e-06!10175-103C4;0.00901978!10161-103A8;0.0108581!12131-128D7;0.202641!10624-108H3;0.283169!10712-109I1;5.69318e-06!10205-103F7;0.140205!10206-103F8;0.413867!10207-103F9;0.882015!10050-101G5;0.786029!10051-101G6;0.796555!10016-101C7;0.426788!10046-101G1;0.151986!10778-110G4;0.937194!10633-108I3;0.223064!10818-111B8;0.0178211!10819-111B9;0.00211195!10820-111C1;0.00166534!10484-107A7;0.000889521!10808-111A7;0.0953058!10169-103B7;0.357288!10153-102I9;0.0218657!13425-144D5;0.186994!13433-144E4;0.0817092!13437-144E8;0.0952571!11904-125F5;0.0776504!11905-125F6;0.779312!10039-101F3;0.609982!10791-110H8;0.0158234!10017-101C8;0.461017!10045-101F9;0.402067!10509-107D5;0.719032!10839-111E2;0.367571!10692-109F8;0.227346!10079-102A7;0.274815!10078-102A6;0.705316!10721-110A1;0.243767!10569-108B2;0.330446!10570-108B3;0.150252!10571-108B4;0.469185!10647-109A8;0.820426!10752-110D5;0.17833!10782-110G8;0.370514!10726-110A6;0.340416!10018-101C9;0.0367513!10086-102B5;0.176362!10182-103D2;0.00818707!10165-103B3;0.128746!10499-107C4;0.0572747!10408-106B3;0.930033!10019-101D1;0.872751!10068-101I5;0.278696!10075-102A3;0.567061!10077-102A5;0.321622!10727-110A7;0.845979!10775-110G1;0.85204!10412-106B7;0.551386!12231-129F8;0.326684!12232-129F9;0.177345!12233-129G1;0.127739!12234-129G2;0.253397!10414-106B9;0.0190482!10170-103B8;0.590703!10183-103D3;0.0155873!10150-102I6;0.035898!10174-103C3;0.122263!10155-103A2;0.139553!10038-101F2;0.160204!10838-111E1;0.0251097!10759-110E3;0.00487162!10514-107E1;0.0201434!10465-106H6;0.0759207!10691-109F7;0.0308857!10843-111E6;0.636393!10844-111E7;0.527402!11747-123G1;0.976267!11748-123G2;0.0692862!11749-123G3;0.42824!11750-123G4;0.427696!11751-123G5;0.370226!11840-124H4;0.598271!11752-123G6;0.741633!11753-123G7;0.159926!11754-123G8;0.889638!11755-123G9;0.402508!11756-123H1;0.0695269!11833-124G6;0.406429!11760-123H5;0.22876!11836-124G9;0.128369!11758-123H3;0.834492!11835-124G8;0.624354!11762-123H7;0.713128!11838-124H2;0.355987!11757-123H2;0.714508!11759-123H4;0.100418!11761-123H6;0.551936!11842-124H6;0.743462!11837-124H1;0.369901!10568-108B1;0.362632!13230-141I8;0.230354!13231-141I9;0.564327!10696-109G3;0.768125!10493-107B7;0.759399!10494-107B8;0.287796!10850-111F4;0.000467531!10851-111F5;0.603791!10852-111F6;0.00522568!10853-111F7;0.0406612!10854-111F8;0.526871!10855-111F9;0.601825!10856-111G1;0.755179!10847-111F1;0.0606526!10846-111E9;0.533466!10848-111F2;0.5823!10845-111E8;0.32718!10857-111G2;0.0783094!10858-111G3;0.0727633!10156-103A3;0.729288!11901-125F2;0.145032!11902-125F3;0.680048!11903-125F4;0.558684!10689-109F5;0.602604!10648-109A9;0.206319!10784-110H1;0.256482!10744-110C6;0.422123!10772-110F7;0.35434!10474-106I6;0.33908!10600-108E6;0.595732!10684-109E9;0.0174976!12226-129F3;0.0557318!12227-129F4;0.450168!10508-107D4;0.125073!10539-107G8;0.439133!10607-108F4;0.0699539!10555-107I6;0.568212!10774-110F9;0.0122072!10637-108I7;0.430455!10663-109C6;0.0278467!10728-110A8;0.944465!10729-110A9;0.4319!10430-106D7;0.523811!10730-110B1;0.0596408!10813-111B3;0.802717!10812-111B2;0.73336!10037-101F1;0.414211!10172-103C1;0.0147509!10163-103B1;0.0338649!10076-102A4;0.119867!10073-102A1;0.0100159!10036-101E9;0.204058!10195-103E6;0.00534174!10277-104E7;0.132917!10434-106E2;0.141572!10550-107I1;0.258048!10545-107H5;0.429441!10544-107H4;0.0484985!10704-109H2;0.142169!10510-107D6;0.144757!10558-107I9;0.46035!10020-101D2;0.106234!10732-110B3;0.531832!10049-101G4;0.00597918!10698-109G5;0.147186!10437-106E5;0.148346!10417-106C3;0.213962!10035-101E8;0.199755!10171-103B9;0.0174382!10157-103A4;0.0213916!10034-101E7;0.0714326!10072-101I9;0.0132749!10199-103F1;0.287837!10200-103F2;0.258929!10697-109G4;0.747264!10723-110A3;0.458386!10179-103C8;0.274208!10160-103A7;0.620583!10180-103C9;0.384608!10162-103A9;0.387896!10021-101D3;0.309007!10840-111E3;0.406024!10706-109H4;0.482207!10033-101E6;0.347524!10032-101E5;0.0290276!10490-107B4;0.00551801!10439-106E7;0.355214!10022-101D4;0.0358779!10176-103C5;0.958497!10469-106I1;0.0314958!10067-101I4;0.161983!10411-106B6;0.212582!10471-106I3;0.402689!10030-101E3;0.0659419!10475-106I7;0.659588!10787-110H4;0.0759369!10477-106I9;0.320815!10695-109G2;0.11482!11771-123I7;0.279526!11772-123I8;0.287102!11773-123I9;0.500971!10093-102C3;0.466559!10442-106F1;0.0694208!10442-106F1;0.748743!10201-103F3;0.768139!10639-108I9;0.94076!11843-124H7;0.287055!11841-124H5;0.189992!10693-109F9;0.98912!10436-106E4;0.31986!10483-107A6;0.211149!10282-104F3;0.687591!10023-101D5;0.217136!10066-101I3;0.144112!10065-101I2;0.345457!10800-110I8;0.800308!10610-108F7;0.141183!10841-111E4;0.0180162!10541-107H1;0.490176!10842-111E5;0.0573657!10562-108A4;0.25109!10024-101D6;0.0651163!10064-101I1;0.172925!10609-108F6;0.0882214!10048-101G3;0.817778!10781-110G7;0.234928!10181-103D1;0.648004!10159-103A6;0.133076!10056-101H2;0.0605751!10737-110B8;0.212858!10025-101D7;0.113612!10044-101F8;0.531153!10424-106D1;0.607911!10463-106H4;0.235988!10616-108G4;0.677974!10486-107A9;0.751387!10062-101H8;0.494999!10202-103F4;0.141644!10158-103A5;0.125589!10441-106E9;0.169681!10031-101E4;0.022065!10063-101H9;0.00753627!10063-101H9;0.17537!11763-123H8;0.666103!11765-123I1;0.285171!11768-123I4;0.492858!10807-111A6;0.664741!10790-110H7;0.12858!10798-110I6;0.0218671!10786-110H3;0.038336!10591-108D6;0.0668548!10593-108D8;0.376469!10590-108D5;0.474793!10026-101D8;0.0970462!10096-102C6;0.386715!10168-103B6;0.0612211!10154-103A1;0.0472236!10209-103G2;0.139932!10061-101H7;0.217686!10027-101D9;0.697777!10043-101F7;0.815725!10783-110G9;0.871294!10028-101E1;0.775005!10060-101H6;0.316121!10203-103F5;0.74766!10059-101H5;0.365032!10047-101G2;0.529239!10029-101E2;0.134465!10058-101H4;0.449128!10418-106C4;0.4468!10492-107B6;0.114585!10694-109G1;0.369668!10797-110I5;0.000216784!10057-101H3;0.614342!10100-102D1;0.623113!10055-101H1;0.932006!10204-103F6;0.365334!10191-103E2;0.647602!10563-108A5;0.547563
|name=6-CGHYWRA,CNhs13512,BestGuess:E2F1..5.p2.SwissRegulon.nucfreq(0.697446122117377),T:1104.0(43.33%),B:14028.8(31.59%),P:1e-34
|name=6-CGHYWRA,CNhs13512,BestGuess:E2F1..5.p2.SwissRegulon.nucfreq(0.697446122117377),T:1104.0(43.33%),B:14028.8(31.59%),P:1e-34
|tomtom_result=YPR015C#MA0435.1;12;0.00212846;1.01315;1;7;CGCCAAA;TGTAAGGATTTACGTCTTCA;-!ABF1#MA0265.1;1;0.0131973;6.28193;1;7;CGCCAAA;TCGTATAAAGTGATAA;+!id1#MA0120.1;0;0.0140469;6.68632;1;7;CGCCAAA;CGAAAAGGAAAA;-!MGA1#MA0336.1;14;0.0161113;7.66899;1;7;CGCCAAA;AGGACTATAGAACACTCTAAA;+
}}
}}

Latest revision as of 13:34, 7 September 2012

Full Name: 6-CGHYWRA,CNhs13512,BestGuess:E2F1..5.p2.SwissRegulon.nucfreq(0.697446122117377),T:1104.0(43.33%),B:14028.8(31.59%),P:1e-34

Motif matrix
POACGT
1245.088683.3761.104174.432
21.1041.1041100.6881.104
3353.28397.441.104351.072
4259.44427.24881.696334.512
5518.881.104204.24379.776
6412.89676.176373.152241.776
7678.96178.848104.88141.312

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
YPR015C#MA0435.1120.002128461.0131517CGCCAAATGTAAGGATTTACGTCTTCA-
ABF1#MA0265.110.01319736.2819317CGCCAAATCGTATAAAGTGATAA+
id1#MA0120.100.01404696.6863217CGCCAAACGAAAAGGAAAA-
MGA1#MA0336.1140.01611137.6689917CGCCAAAAGGACTATAGAACACTCTAAA+
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