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MacroAPE 1083:USF1 GM12878-Usf1-ChIP-Seq/Homer: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;347;577;858;273!2;471;321;1195;68!3;76;641;290;1048!4;2;2047;4;2!5;2049;2;2;2!6;2;1944;2;107!7;129;10;1914;2!8;2;2;4;2047!9;2;2;2049;2!10;91...")
 
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111A8;0.79673!10597-108E3;0.0708904!10717-109I6;0.809697!10455-106G5;0.780203!10534-107G3;0.198086!10429-106D6;0.115023!10464-106H5;0.707089!10827-111C8;0.357537!10789-110H6;0.0303266!10828-111C9;0.0137498!10788-110H5;0.0484173!10792-110H9;0.0433881!10765-110E9;0.000889209!10829-111D1;0.00995846!10830-111D2;0.000751473!10831-111D3;0.0340446!10832-111D4;0.368225!10833-111D5;0.0455359!10764-110E8;0.0432827!10770-110F5;0.228149!10399-106A3;0.0510656!10400-106A4;0.0808404!10405-106A9;0.0698783!10834-111D6;0.0320895!10835-111D7;0.000984095!10836-111D8;0.197771!10837-111D9;0.23766!10699-109G6;0.750441!10802-111A1;0.27851!10796-110I4;0.363233!10010-101C1;0.56423!10810-111A9;0.113064!10421-106C7;0.787201!10708-109H6;0.93189!12235-129G3;0.632612!12236-129G4;0.372114!12237-129G5;0.138365!10167-103B5;0.505119!10151-102I7;0.0762895!10428-106D5;0.0536349!10795-110I3;0.580672!10805-111A4;0.174509!10052-101G7;0.744805!10189-103D9;0.0221!10589-108D4;0.0681171!10425-106D2;0.147795!10427-106D4;0.428533!10702-109G9;0.0325911!10432-106D9;0.0459637!10496-107C1;0.954856!10718-109I7;0.404937!10011-101C2;0.0464802!10053-101G8;0.00348874!10686-109F2;0.643754!10084-102B3;0.262344!10012-101C3;0.324265!10085-102B4;0.0483598!10482-107A5;0.0245863!10419-106C5;0.00820747!10080-102A8;0.720253!10760-110E4;0.324579!10709-109H7;0.136354!10710-109H8;0.785056!10703-109H1;0.715416!10719-109I8;0.946566!10642-109A3;0.483675!10177-103C6;0.689319!10164-103B2;0.0235128!10173-103C2;0.048197!10166-103B4;0.0443012!10083-102B2;0.0185645!10188-103D8;0.0770827!10552-107I3;0.028275!10553-107I4;3.86734e-05!10013-101C4;0.979979!10536-107G5;0.00148208!10618-108G6;0.0121439!10423-106C9;0.257495!10785-110H2;0.984168!12238-129G6;0.279974!12239-129G7;0.280207!12240-129G8;0.0177958!10416-106C2;0.112513!10801-110I9;0.921994!10766-110F1;0.0195868!10824-111C5;0.0120019!10825-111C6;0.547683!10826-111C7;0.591752!10454-106G4;0.720731!10409-106B4;0.116904!10638-108I8;0.160549!10636-108I6;0.588701!10513-107D9;0.948948!10420-106C6;0.156083!10082-102B1;0.0507106!10014-101C5;0.226086!10070-101I7;0.328049!10452-106G2;0.0811205!10453-106G3;0.834742!10449-106F8;0.646266!10042-101F6;0.919108!10069-101I6;0.0972888!10193-103E4;0.00935356!10631-108I1;0.182417!10438-106E6;0.162098!10488-107B2;0.639401!10196-103E7;0.000886178!10071-101I8;0.095707!10071-101I8;0.00498341!10041-101F5;0.0046095!10451-106G1;0.0063941!10450-106F9;0.0329032!10604-108F1;0.571556!10605-108F2;0.124197!10606-108F3;0.162692!10603-108E9;0.11832!10497-107C2;0.254067!10448-106F7;0.236494!10643-109A4;0.967167!10426-106D3;0.991036!10431-106D8;0.507489!10197-103E8;0.832827!10443-106F2;0.121278!10815-111B5;0.357286!10816-111B6;0.0336381!10817-111B7;0.0521692!10015-101C6;0.0331965!10410-106B5;0.0358528!10054-101G9;0.000795661!10758-110E2;0.00319555!10711-109H9;0.88297!10040-101F4;0.160484!10470-106I2;0.0654592!10415-106C1;0.703353!10198-103E9;0.8828!10614-108G2;0.156972!10612-108F9;0.316486!10549-107H9;0.321301!10615-108G3;0.0651779!10487-107B1;0.0149208!10433-106E1;2.23007e-08!10688-109F4;0.208123!10444-106F3;0.339077!10444-106F3;0.25754!10485-107A8;0.282381!10413-106B8;0.0547062!10175-103C4;0.00225367!10161-103A8;0.0589834!12131-128D7;0.107299!10624-108H3;0.063948!10712-109I1;0.263473!10205-103F7;0.111288!10206-103F8;0.000260345!10207-103F9;0.000546896!10050-101G5;0.00373758!10051-101G6;0.285847!10016-101C7;0.017597!10046-101G1;0.0149805!10778-110G4;0.0013282!10633-108I3;0.0317041!10818-111B8;0.0678989!10819-111B9;0.0701434!10820-111C1;0.0677153!10484-107A7;0.0834101!10808-111A7;0.166803!10169-103B7;0.284753!10153-102I9;0.0512761!13425-144D5;0.0333981!13433-144E4;0.333011!13437-144E8;0.459768!11904-125F5;0.606575!11905-125F6;0.970668!10039-101F3;0.294688!10791-110H8;0.0732412!10017-101C8;0.0190862!10045-101F9;0.927045!10509-107D5;0.311305!10839-111E2;0.259029!10692-109F8;0.0371333!10079-102A7;0.788248!10078-102A6;0.0342496!10721-110A1;0.00753797!10569-108B2;0.673258!10570-108B3;0.054254!10571-108B4;0.935899!10647-109A8;0.959717!10752-110D5;0.0999967!10782-110G8;0.00135932!10726-110A6;0.197533!10018-101C9;0.13396!10086-102B5;0.199584!10182-103D2;0.559527!10165-103B3;0.0194691!10499-107C4;0.0580271!10408-106B3;2.68499e-05!10019-101D1;0.879792!10068-101I5;0.264373!10075-102A3;0.00026839!10077-102A5;0.352825!10727-110A7;0.591893!10775-110G1;0.000382765!10412-106B7;0.685324!12231-129F8;0.787458!12232-129F9;0.93666!12233-129G1;0.381095!12234-129G2;0.918161!10414-106B9;0.542619!10170-103B8;0.0347984!10183-103D3;0.0610475!10150-102I6;0.0295898!10174-103C3;0.0597716!10155-103A2;0.0187973!10038-101F2;0.0592809!10838-111E1;0.0194198!10759-110E3;0.90816!10514-107E1;0.140247!10465-106H6;1.43548e-23!10691-109F7;1.3565e-08!10843-111E6;0.560944!10844-111E7;0.741179!11747-123G1;0.768596!11748-123G2;0.170633!11749-123G3;0.902868!11750-123G4;0.754101!11751-123G5;0.052228!11840-124H4;0.0580845!11752-123G6;0.683962!11753-123G7;0.00238734!11754-123G8;0.138269!11755-123G9;0.462593!11756-123H1;0.760072!11833-124G6;0.236046!11760-123H5;0.00194295!11836-124G9;0.0592537!11758-123H3;0.145684!11835-124G8;0.128682!11762-123H7;0.93211!11838-124H2;0.206484!11757-123H2;0.118591!11759-123H4;0.0026052!11761-123H6;0.565012!11842-124H6;0.43617!11837-124H1;0.432235!10568-108B1;0.0833192!13230-141I8;0.10939!13231-141I9;0.532535!10696-109G3;0.487916!10493-107B7;0.102281!10494-107B8;0.524318!10850-111F4;0.642136!10851-111F5;0.0188315!10852-111F6;0.105634!10853-111F7;0.00224877!10854-111F8;0.467671!10855-111F9;0.57155!10856-111G1;0.0113017!10847-111F1;0.240162!10846-111E9;0.0304209!10848-111F2;0.957009!10845-111E8;0.420151!10857-111G2;0.745682!10858-111G3;9.34512e-05!10156-103A3;0.000201819!11901-125F2;0.0592576!11902-125F3;0.340642!11903-125F4;0.768267!10689-109F5;0.948855!10648-109A9;0.00497193!10784-110H1;0.665597!10744-110C6;0.2462!10772-110F7;0.583407!10474-106I6;0.00328269!10600-108E6;0.000866444!10684-109E9;0.10117!12226-129F3;0.0147854!12227-129F4;0.250424!10508-107D4;0.0272148!10539-107G8;0.879353!10607-108F4;0.640299!10555-107I6;0.0360915!10774-110F9;0.740376!10637-108I7;0.0234566!10663-109C6;0.481631!10728-110A8;0.270275!10729-110A9;0.133996!10430-106D7;0.0212512!10730-110B1;0.944333!10813-111B3;0.69999!10812-111B2;0.0201882!10037-101F1;0.0308225!10172-103C1;0.0685026!10163-103B1;0.0553904!10076-102A4;0.0465078!10073-102A1;0.093467!10036-101E9;0.012114!10195-103E6;0.151391!10277-104E7;0.0383593!10434-106E2;0.166023!10550-107I1;0.136395!10545-107H5;0.143143!10544-107H4;0.346383!10704-109H2;0.532557!10510-107D6;0.582498!10558-107I9;0.26835!10020-101D2;0.000419302!10732-110B3;0.00266709!10049-101G4;0.898963!10698-109G5;0.341637!10437-106E5;0.126044!10417-106C3;0.0876119!10035-101E8;0.981498!10171-103B9;0.109338!10157-103A4;0.0444185!10034-101E7;0.0524332!10072-101I9;0.119936!10199-103F1;0.00406515!10200-103F2;0.772386!10697-109G4;0.030534!10723-110A3;0.0244637!10179-103C8;0.444105!10160-103A7;0.211062!10180-103C9;0.0849076!10162-103A9;0.190304!10021-101D3;0.245397!10840-111E3;0.0545476!10706-109H4;0.0126239!10033-101E6;0.00505531!10032-101E5;0.0493988!10490-107B4;0.14066!10439-106E7;0.869394!10022-101D4;0.720483!10176-103C5;0.00754417!10469-106I1;0.0554504!10067-101I4;0.031641!10411-106B6;5.56053e-07!10471-106I3;0.0556474!10030-101E3;0.0347551!10475-106I7;0.00754958!10787-110H4;0.581346!10477-106I9;0.959643!10695-109G2;0.357024!11771-123I7;0.0284682!11772-123I8;0.582636!11773-123I9;0.758306!10093-102C3;0.946075!10442-106F1;0.941653!10442-106F1;1.11227e-12!10201-103F3;9.09825e-12!10639-108I9;0.0448992!11843-124H7;0.0930881!11841-124H5;0.926396!10693-109F9;0.0155839!10436-106E4;0.192999!10483-107A6;0.0476977!10282-104F3;0.388849!10023-101D5;0.575103!10066-101I3;0.669517!10065-101I2;0.0480382!10800-110I8;0.00261845!10610-108F7;0.0417937!10841-111E4;0.974977!10541-107H1;0.240122!10842-111E5;0.335358!10562-108A4;0.855022!10024-101D6;0.162826!10064-101I1;0.207478!10609-108F6;0.158781!10048-101G3;0.335466!10781-110G7;0.00108432!10181-103D1;0.0226352!10159-103A6;0.0214282!10056-101H2;0.149561!10737-110B8;0.0007897!10025-101D7;0.0499176!10044-101F8;0.808445!10424-106D1;0.49427!10463-106H4;0.00392944!10616-108G4;0.845721!10486-107A9;0.474722!10062-101H8;0.000514037!10202-103F4;0.0113647!10158-103A5;0.784938!10441-106E9;0.291485!10031-101E4;0.33133!10063-101H9;0.145153!10063-101H9;0.00773451!11763-123H8;0.00679761!11765-123I1;0.095908!11768-123I4;0.728595!10807-111A6;0.109357!10790-110H7;0.617637!10798-110I6;0.498911!10786-110H3;0.28555!10591-108D6;0.145016!10593-108D8;0.144843!10590-108D5;0.00415063!10026-101D8;0.167304!10096-102C6;0.149839!10168-103B6;0.737148!10154-103A1;0.0291579!10209-103G2;0.139302!10061-101H7;0.18056!10027-101D9;0.0125249!10043-101F7;0.247952!10783-110G9;0.127576!10028-101E1;0.653353!10060-101H6;0.790091!10203-103F5;0.047377!10059-101H5;0.225291!10047-101G2;0.109697!10029-101E2;0.535733!10058-101H4;0.183925!10418-106C4;0.0280071!10492-107B6;0.982052!10694-109G1;1.97538e-06!10797-110I5;0.0230916!10057-101H3;0.0461598!10100-102D1;0.0143122!10055-101H1;0.00388399!10204-103F6;4.30794e-06!10191-103E2;0.0152199!10563-108A5;0.0420547
|name=USF1_GM12878-Usf1-ChIP-Seq/Homer
|name=USF1_GM12878-Usf1-ChIP-Seq/Homer
|tomtom_result=MAX#MA0058.1;0;9.22669e-07;0.000439191;0.00060713;10;GGTCACGTGA;AACCACGTGA;+!TYE7#MA0409.1;-2;1.79492e-06;0.00085438;0.00060713;7;GGTCACGTGA;TCACGTG;-!USF1#MA0093.1;-2;2.38826e-06;0.00113681;0.00060713;7;GGTCACGTGA;CCACGTG;-!Mycn#MA0104.2;-3;3.81678e-06;0.00181679;0.00060713;6;GGTCACGTGA;CACGTG;+!Arnt#MA0004.1;-3;1.06142e-05;0.00505236;0.00121632;6;GGTCACGTGA;CACGTG;+!Mycn#MA0104.2;-1;3.41023e-05;0.0162327;0.00312633;9;GGTCACGTGA;GCCACGTGCG;-!CBF1#MA0281.1;-2;4.5669e-05;0.0217384;0.00324922;8;GGTCACGTGA;TCACGTGC;-!h#MA0449.1;-1;4.96198e-05;0.023619;0.00324922;9;GGTCACGTGA;GGCACGTGCC;+!MYC::MAX#MA0059.1;0;7.73556e-05;0.0368213;0.00443224;10;GGTCACGTGA;GAGCACGTGGT;+!Myc#MA0147.1;-1;0.000132776;0.0632016;0.00716018;9;GGTCACGTGA;GCCACGTGCG;-!RTG3#MA0376.1;4;0.000167045;0.0795133;0.0083527;10;GGTCACGTGA;GACTAAGCACGTGCTAATAT;-!HAC1#MA0310.1;-1;0.000182491;0.0868655;0.00836493;8;GGTCACGTGA;GACACGTG;+!PHO4#MA0357.1;-2;0.000381633;0.181657;0.0152114;8;GGTCACGTGA;GCACGTGC;+!EmBP-1#MA0128.1;-2;0.000961242;0.457551;0.0338931;8;GGTCACGTGA;ACACGTGG;+!bZIP911#MA0097.1;0;0.001417;0.674491;0.0463941;10;GGTCACGTGA;GATGACGTGGCC;+!HIF1A::ARNT#MA0259.1;-2;0.0024623;1.17206;0.073557;8;GGTCACGTGA;GCACGTCC;-!Pax2#MA0067.1;0;0.00259657;1.23597;0.073557;8;GGTCACGTGA;AGTCACGG;+!sna#MA0086.1;-3;0.00264781;1.26036;0.073557;6;GGTCACGTGA;CAGGTG;+!tin#MA0247.1;-1;0.00459909;2.18917;0.117117;8;GGTCACGTGA;CTCAAGTG;+!ceh-22#MA0264.1;0;0.00619863;2.95055;0.153584;10;GGTCACGTGA;TTTCAAGTGGT;-!ZEB1#MA0103.1;-3;0.00762672;3.63032;0.174795;6;GGTCACGTGA;CACCTG;+!ESR1#MA0112.1;8;0.0093298;4.44098;0.206267;10;GGTCACGTGA;GGGGTCACGGTGACCTGG;-!INO2#MA0321.1;-2;0.00944993;4.49817;0.206267;8;GGTCACGTGA;GCATGTGAA;+!CST6#MA0286.1;-1;0.0103693;4.93577;0.221071;9;GGTCACGTGA;ATGACGTAA;+!usp#MA0016.1;2;0.0110052;5.23848;0.221449;8;GGTCACGTGA;GGGGTCACGG;+!CREB1#MA0018.1;3;0.0110902;5.27892;0.221449;9;GGTCACGTGA;CCTGGTGACGTC;+!INO4#MA0322.1;-2;0.0124545;5.92836;0.24293;8;GGTCACGTGA;GCATGTGAA;+!Arnt::Ahr#MA0006.1;-3;0.0134752;6.41422;0.257363;6;GGTCACGTGA;CACGCA;-!TGA1A#MA0129.1;-2;0.0151064;7.19067;0.276977;7;GGTCACGTGA;TGACGTA;-!MBP1#MA0329.1;-1;0.0196678;9.36188;0.34674;7;GGTCACGTGA;TACGCGT;-!ABF1#MA0265.1;1;0.0202206;9.62502;0.34976;10;GGTCACGTGA;ATATCACTTTATACGA;-
}}
}}

Latest revision as of 13:33, 7 September 2012

Full Name: USF1_GM12878-Usf1-ChIP-Seq/Homer

Motif matrix
POACGT
1347577858273
2471321119568
3766412901048
42204742
52049222
6219442107
71291019142
82242047
92220492
10919296713127

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
MAX#MA0058.109.22669e-070.0004391910.0006071310GGTCACGTGAAACCACGTGA+
TYE7#MA0409.1-21.79492e-060.000854380.000607137GGTCACGTGATCACGTG-
USF1#MA0093.1-22.38826e-060.001136810.000607137GGTCACGTGACCACGTG-
Mycn#MA0104.2-33.81678e-060.001816790.000607136GGTCACGTGACACGTG+
Arnt#MA0004.1-31.06142e-050.005052360.001216326GGTCACGTGACACGTG+
Mycn#MA0104.2-13.41023e-050.01623270.003126339GGTCACGTGAGCCACGTGCG-
CBF1#MA0281.1-24.5669e-050.02173840.003249228GGTCACGTGATCACGTGC-
h#MA0449.1-14.96198e-050.0236190.003249229GGTCACGTGAGGCACGTGCC+
MYC::MAX#MA0059.107.73556e-050.03682130.0044322410GGTCACGTGAGAGCACGTGGT+
Myc#MA0147.1-10.0001327760.06320160.007160189GGTCACGTGAGCCACGTGCG-
RTG3#MA0376.140.0001670450.07951330.008352710GGTCACGTGAGACTAAGCACGTGCTAATAT-
HAC1#MA0310.1-10.0001824910.08686550.008364938GGTCACGTGAGACACGTG+
PHO4#MA0357.1-20.0003816330.1816570.01521148GGTCACGTGAGCACGTGC+
EmBP-1#MA0128.1-20.0009612420.4575510.03389318GGTCACGTGAACACGTGG+
bZIP911#MA0097.100.0014170.6744910.046394110GGTCACGTGAGATGACGTGGCC+
HIF1A::ARNT#MA0259.1-20.00246231.172060.0735578GGTCACGTGAGCACGTCC-
Pax2#MA0067.100.002596571.235970.0735578GGTCACGTGAAGTCACGG+
sna#MA0086.1-30.002647811.260360.0735576GGTCACGTGACAGGTG+
tin#MA0247.1-10.004599092.189170.1171178GGTCACGTGACTCAAGTG+
ceh-22#MA0264.100.006198632.950550.15358410GGTCACGTGATTTCAAGTGGT-
ZEB1#MA0103.1-30.007626723.630320.1747956GGTCACGTGACACCTG+
ESR1#MA0112.180.00932984.440980.20626710GGTCACGTGAGGGGTCACGGTGACCTGG-
INO2#MA0321.1-20.009449934.498170.2062678GGTCACGTGAGCATGTGAA+
CST6#MA0286.1-10.01036934.935770.2210719GGTCACGTGAATGACGTAA+
usp#MA0016.120.01100525.238480.2214498GGTCACGTGAGGGGTCACGG+
CREB1#MA0018.130.01109025.278920.2214499GGTCACGTGACCTGGTGACGTC+
INO4#MA0322.1-20.01245455.928360.242938GGTCACGTGAGCATGTGAA+
Arnt::Ahr#MA0006.1-30.01347526.414220.2573636GGTCACGTGACACGCA-
TGA1A#MA0129.1-20.01510647.190670.2769777GGTCACGTGATGACGTA-
MBP1#MA0329.1-10.01966789.361880.346747GGTCACGTGATACGCGT-
ABF1#MA0265.110.02022069.625020.3497610GGTCACGTGAATATCACTTTATACGA-
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