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MacroAPE 1083:4-AAAWRCG: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;444.106;167.388;141.752;0.754!2;590.382;0.754;0.754;162.11!3;745.706;6.786;0.754;0.754!4;382.278;0.754;96.512;274.456!5;171.158;140.244;281....")
 
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;0.884586!10827-111C8;0.376781!10789-110H6;0.715155!10828-111C9;0.879644!10788-110H5;0.80668!10792-110H9;0.829861!10765-110E9;0.546034!10829-111D1;0.792311!10830-111D2;0.765028!10831-111D3;0.762229!10832-111D4;0.681851!10833-111D5;0.545751!10764-110E8;0.656996!10770-110F5;0.334406!10399-106A3;0.602157!10400-106A4;0.251508!10405-106A9;0.237343!10834-111D6;0.254911!10835-111D7;0.430046!10836-111D8;0.364502!10837-111D9;0.125913!10699-109G6;0.828312!10802-111A1;0.833914!10796-110I4;0.641499!10010-101C1;0.183753!10810-111A9;0.139689!10421-106C7;0.0127535!10708-109H6;0.753046!12235-129G3;0.00546268!12236-129G4;0.643703!12237-129G5;0.605671!10167-103B5;0.868544!10151-102I7;0.485483!10428-106D5;0.508979!10795-110I3;0.122075!10805-111A4;0.553398!10052-101G7;0.140163!10189-103D9;0.09205!10589-108D4;0.148893!10425-106D2;0.156662!10427-106D4;0.164775!10702-109G9;0.781364!10432-106D9;0.473799!10496-107C1;0.0151671!10718-109I7;0.00239842!10011-101C2;0.631866!10053-101G8;0.0810992!10686-109F2;0.162392!10084-102B3;0.0456871!10012-101C3;0.361665!10085-102B4;0.288173!10482-107A5;0.945093!10419-106C5;0.00864699!10080-102A8;0.0142095!10760-110E4;0.914938!10709-109H7;0.0318388!10710-109H8;0.0283479!10703-109H1;0.0139921!10719-109I8;0.0580153!10642-109A3;0.158072!10177-103C6;0.0444909!10164-103B2;0.370273!10173-103C2;0.290604!10166-103B4;0.901962!10083-102B2;0.72898!10188-103D8;0.744485!10552-107I3;0.460776!10553-107I4;0.0502882!10013-101C4;0.00710531!10536-107G5;0.096632!10618-108G6;0.0166731!10423-106C9;0.00532159!10785-110H2;0.00488895!12238-129G6;0.0432226!12239-129G7;0.996405!12240-129G8;0.421463!10416-106C2;0.725144!10801-110I9;0.832955!10766-110F1;0.886916!10824-111C5;0.737003!10825-111C6;0.167097!10826-111C7;0.150388!10454-106G4;0.121711!10409-106B4;0.206291!10638-108I8;0.683083!10636-108I6;0.0296511!10513-107D9;0.00174623!10420-106C6;0.0358692!10082-102B1;0.536051!10014-101C5;0.113746!10070-101I7;0.0563223!10452-106G2;0.234184!10453-106G3;0.00650929!10449-106F8;0.0334525!10042-101F6;0.02753!10069-101I6;0.196096!10193-103E4;0.0726851!10631-108I1;0.256404!10438-106E6;0.924062!10488-107B2;0.00162461!10196-103E7;0.03304!10071-101I8;0.257174!10071-101I8;0.206097!10041-101F5;0.857692!10451-106G1;0.111494!10450-106F9;0.123791!10604-108F1;0.065543!10605-108F2;0.000584424!10606-108F3;0.00753704!10603-108E9;0.000379499!10497-107C2;0.000282323!10448-106F7;0.00406155!10643-109A4;0.00478928!10426-106D3;0.110493!10431-106D8;0.0124909!10197-103E8;0.0262495!10443-106F2;0.0276885!10815-111B5;0.0708079!10816-111B6;0.0138383!10817-111B7;0.0104907!10015-101C6;0.022176!10410-106B5;0.0664606!10054-101G9;0.0549285!10758-110E2;0.220221!10711-109H9;0.00156764!10040-101F4;0.00368279!10470-106I2;0.323605!10415-106C1;0.0142047!10198-103E9;0.00240654!10614-108G2;0.160962!10612-108F9;0.0515506!10549-107H9;0.0412063!10615-108G3;0.0709627!10487-107B1;0.187672!10433-106E1;0.198207!10688-109F4;0.00215634!10444-106F3;0.00366748!10444-106F3;0.0019255!10485-107A8;0.00397797!10413-106B8;0.00778342!10175-103C4;0.0199207!10161-103A8;0.312841!12131-128D7;0.296072!10624-108H3;0.703488!10712-109I1;0.0971723!10205-103F7;0.91613!10206-103F8;0.124607!10207-103F9;0.119365!10050-101G5;0.868725!10051-101G6;0.386103!10016-101C7;0.0676188!10046-101G1;0.134054!10778-110G4;0.149604!10633-108I3;0.986017!10818-111B8;0.00050031!10819-111B9;0.0913877!10820-111C1;0.101603!10484-107A7;0.0811!10808-111A7;0.0306625!10169-103B7;0.38873!10153-102I9;0.548437!13425-144D5;0.518212!13433-144E4;0.0606952!13437-144E8;0.0386237!11904-125F5;0.0533021!11905-125F6;0.906599!10039-101F3;0.808888!10791-110H8;0.337345!10017-101C8;0.190524!10045-101F9;0.0875956!10509-107D5;0.214142!10839-111E2;0.0171212!10692-109F8;0.125378!10079-102A7;0.00557683!10078-102A6;0.0890807!10721-110A1;0.0749564!10569-108B2;0.0702483!10570-108B3;0.16661!10571-108B4;0.565432!10647-109A8;0.539645!10752-110D5;0.0131992!10782-110G8;0.546355!10726-110A6;0.710901!10018-101C9;0.00328469!10086-102B5;0.192942!10182-103D2;0.415766!10165-103B3;0.538538!10499-107C4;0.342398!10408-106B3;0.0189334!10019-101D1;0.012457!10068-101I5;0.0491673!10075-102A3;0.12264!10077-102A5;0.138202!10727-110A7;0.296149!10775-110G1;0.958259!10412-106B7;0.720736!12231-129F8;0.081254!12232-129F9;0.777356!12233-129G1;0.278681!12234-129G2;0.144632!10414-106B9;0.622258!10170-103B8;0.234674!10183-103D3;0.562148!10150-102I6;0.443619!10174-103C3;0.413915!10155-103A2;0.27192!10038-101F2;0.305941!10838-111E1;0.231042!10759-110E3;0.109746!10514-107E1;0.0334658!10465-106H6;0.104766!10691-109F7;0.164777!10843-111E6;0.00902658!10844-111E7;0.0458793!11747-123G1;0.0808166!11748-123G2;0.862231!11749-123G3;0.870985!11750-123G4;0.689571!11751-123G5;0.402089!11840-124H4;0.146598!11752-123G6;0.154204!11753-123G7;0.285817!11754-123G8;0.453714!11755-123G9;0.489414!11756-123H1;0.921719!11833-124G6;0.272533!11760-123H5;0.656642!11836-124G9;0.519045!11758-123H3;0.95443!11835-124G8;0.640738!11762-123H7;0.983168!11838-124H2;0.556684!11757-123H2;0.833828!11759-123H4;0.252636!11761-123H6;0.967591!11842-124H6;0.559099!11837-124H1;0.964797!10568-108B1;0.788878!13230-141I8;0.194349!13231-141I9;0.290772!10696-109G3;0.297471!10493-107B7;0.912386!10494-107B8;0.0139478!10850-111F4;0.0086439!10851-111F5;0.0140023!10852-111F6;0.0493874!10853-111F7;0.138795!10854-111F8;0.0493392!10855-111F9;0.125884!10856-111G1;0.12046!10847-111F1;0.0507426!10846-111E9;0.0108423!10848-111F2;0.0117037!10845-111E8;0.00889479!10857-111G2;0.00618933!10858-111G3;0.0492394!10156-103A3;0.00984397!11901-125F2;0.441557!11902-125F3;0.464006!11903-125F4;0.706291!10689-109F5;0.529446!10648-109A9;0.014475!10784-110H1;0.0990341!10744-110C6;0.0284231!10772-110F7;0.613801!10474-106I6;0.474926!10600-108E6;0.0334727!10684-109E9;0.00996201!12226-129F3;0.0883801!12227-129F4;0.657172!10508-107D4;0.87672!10539-107G8;0.0643768!10607-108F4;0.0649842!10555-107I6;0.406853!10774-110F9;0.236589!10637-108I7;0.217504!10663-109C6;0.721502!10728-110A8;0.423923!10729-110A9;0.142981!10430-106D7;0.619559!10730-110B1;0.207846!10813-111B3;0.367874!10812-111B2;0.992798!10037-101F1;0.863319!10172-103C1;0.262253!10163-103B1;0.547858!10076-102A4;0.451045!10073-102A1;0.368237!10036-101E9;0.969692!10195-103E6;0.308582!10277-104E7;0.440736!10434-106E2;0.346396!10550-107I1;0.200578!10545-107H5;0.106206!10544-107H4;0.108027!10704-109H2;0.0227471!10510-107D6;0.711773!10558-107I9;7.69622e-05!10020-101D2;0.285727!10732-110B3;0.159728!10049-101G4;0.025638!10698-109G5;0.0407411!10437-106E5;0.00818246!10417-106C3;0.00508147!10035-101E8;0.0538414!10171-103B9;0.322254!10157-103A4;0.453324!10034-101E7;0.451721!10072-101I9;0.28928!10199-103F1;0.895908!10200-103F2;0.0157301!10697-109G4;0.109854!10723-110A3;0.214876!10179-103C8;0.340418!10160-103A7;0.746933!10180-103C9;0.778263!10162-103A9;0.290138!10021-101D3;0.451875!10840-111E3;0.22234!10706-109H4;0.951981!10033-101E6;0.052549!10032-101E5;0.317205!10490-107B4;0.278808!10439-106E7;0.0331219!10022-101D4;0.0159191!10176-103C5;0.0915031!10469-106I1;0.372616!10067-101I4;0.00670533!10411-106B6;0.468816!10471-106I3;0.0412725!10030-101E3;0.195897!10475-106I7;0.1287!10787-110H4;0.0206494!10477-106I9;0.0432147!10695-109G2;0.0831814!11771-123I7;0.898751!11772-123I8;0.259167!11773-123I9;0.775816!10093-102C3;0.380132!10442-106F1;0.00290416!10442-106F1;0.0924194!10201-103F3;0.14521!10639-108I9;0.301523!11843-124H7;0.0722871!11841-124H5;0.273309!10693-109F9;0.0495775!10436-106E4;0.0290461!10483-107A6;0.120408!10282-104F3;0.0511153!10023-101D5;0.321534!10066-101I3;0.0824085!10065-101I2;0.0833908!10800-110I8;0.122263!10610-108F7;0.0656987!10841-111E4;0.191976!10541-107H1;0.0680207!10842-111E5;0.374268!10562-108A4;0.0285936!10024-101D6;0.105655!10064-101I1;0.1011!10609-108F6;0.129564!10048-101G3;0.230881!10781-110G7;0.0794394!10181-103D1;0.00910798!10159-103A6;0.411906!10056-101H2;0.334804!10737-110B8;0.38454!10025-101D7;0.264498!10044-101F8;0.4395!10424-106D1;0.291711!10463-106H4;0.638429!10616-108G4;0.14828!10486-107A9;0.0217915!10062-101H8;0.10699!10202-103F4;0.800407!10158-103A5;0.0104242!10441-106E9;0.256084!10031-101E4;0.033915!10063-101H9;0.301544!10063-101H9;0.969931!11763-123H8;0.139264!11765-123I1;0.252445!11768-123I4;0.0702183!10807-111A6;0.525588!10790-110H7;0.024138!10798-110I6;0.0566246!10786-110H3;0.0124146!10591-108D6;0.0277972!10593-108D8;0.0112311!10590-108D5;0.013608!10026-101D8;0.00739673!10096-102C6;0.080896!10168-103B6;0.798114!10154-103A1;0.39162!10209-103G2;0.285884!10061-101H7;0.0234963!10027-101D9;0.0451031!10043-101F7;0.281691!10783-110G9;0.211029!10028-101E1;0.0237076!10060-101H6;0.0573745!10203-103F5;0.0360668!10059-101H5;0.0658618!10047-101G2;0.0965465!10029-101E2;0.0868454!10058-101H4;0.111685!10418-106C4;0.0701998!10492-107B6;0.032548!10694-109G1;0.0583846!10797-110I5;0.00784556!10057-101H3;0.0178098!10100-102D1;0.176561!10055-101H1;0.0805917!10204-103F6;0.206131!10191-103E2;0.472856!10563-108A5;0.0699481
|name=4-AAAWRCG,CNhs11846,BestGuess:IRF7_f1_HM09(0.60007928784966),T:754.0(48.77%),B:16161.7(35.17%),P:1e-27
|name=4-AAAWRCG,CNhs11846,BestGuess:IRF7_f1_HM09(0.60007928784966),T:754.0(48.77%),B:16161.7(35.17%),P:1e-27
|tomtom_result=IRF1#MA0050.1;0;0.00285003;1.35662;1;7;AAAAGCG;GAAAGCGAAACC;+!Dof3#MA0021.1;-1;0.00676738;3.22127;1;6;AAAAGCG;AAAGCG;+!NDT80#MA0343.1;11;0.00705735;3.3593;1;7;AAAAGCG;TTTCCGGCCACAAAAACGCAA;+!TBP#MA0108.2;4;0.00834155;3.97058;1;7;AAAAGCG;GTATAAAAGGCGGGG;+!TBP#MA0108.2;4;0.00834155;3.97058;1;7;AAAAGCG;GTATAAAAGGCGGGG;+!MNB1A#MA0053.1;-1;0.014238;6.77727;1;5;AAAAGCG;AAAGC;+!PBF#MA0064.1;-1;0.0172739;8.22238;1;5;AAAAGCG;AAAGC;+!AG#MA0005.1;2;0.0179303;8.53481;1;7;AAAAGCG;CCAAATTTGGT;+
}}
}}

Latest revision as of 13:28, 7 September 2012

Full Name: 4-AAAWRCG,CNhs11846,BestGuess:IRF7_f1_HM09(0.60007928784966),T:754.0(48.77%),B:16161.7(35.17%),P:1e-27

Motif matrix
POACGT
1444.106167.388141.7520.754
2590.3820.7540.754162.11
3745.7066.7860.7540.754
4382.2780.75496.512274.456
5171.158140.244281.996161.356
60.754751.7380.7540.754
70.7540.754751.7380.754

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
IRF1#MA0050.100.002850031.3566217AAAAGCGGAAAGCGAAACC+
Dof3#MA0021.1-10.006767383.2212716AAAAGCGAAAGCG+
NDT80#MA0343.1110.007057353.359317AAAAGCGTTTCCGGCCACAAAAACGCAA+
TBP#MA0108.240.008341553.9705817AAAAGCGGTATAAAAGGCGGGG+
TBP#MA0108.240.008341553.9705817AAAAGCGGTATAAAAGGCGGGG+
MNB1A#MA0053.1-10.0142386.7772715AAAAGCGAAAGC+
PBF#MA0064.1-10.01727398.2223815AAAAGCGAAAGC+
AG#MA0005.120.01793038.5348117AAAAGCGCCAAATTTGGT+
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MacroAPE_1083:4-AAAWRCG&oldid=2134010"