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MacroAPE 1083:SOX2: Difference between revisions

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06H5;0.194226!10827-111C8;0.863015!10789-110H6;0.0896742!10828-111C9;0.296276!10788-110H5;0.957311!10792-110H9;0.737161!10765-110E9;0.664989!10829-111D1;0.452045!10830-111D2;0.431107!10831-111D3;0.529291!10832-111D4;0.219656!10833-111D5;0.840227!10764-110E8;0.775958!10770-110F5;0.769139!10399-106A3;0.572435!10400-106A4;0.699701!10405-106A9;0.572741!10834-111D6;0.770439!10835-111D7;0.173598!10836-111D8;0.109322!10837-111D9;0.281904!10699-109G6;0.132188!10802-111A1;0.651581!10796-110I4;0.650936!10010-101C1;0.625002!10810-111A9;0.929762!10421-106C7;0.829133!10708-109H6;0.826329!12235-129G3;0.492553!12236-129G4;0.852357!12237-129G5;0.372977!10167-103B5;0.782742!10151-102I7;0.493425!10428-106D5;0.0561061!10795-110I3;0.549784!10805-111A4;0.164846!10052-101G7;0.0323404!10189-103D9;0.720653!10589-108D4;0.558704!10425-106D2;0.746467!10427-106D4;0.463729!10702-109G9;0.661146!10432-106D9;0.157684!10496-107C1;0.502504!10718-109I7;0.901685!10011-101C2;0.498733!10053-101G8;0.888751!10686-109F2;0.673723!10084-102B3;0.369483!10012-101C3;0.152887!10085-102B4;0.0868993!10482-107A5;0.0216467!10419-106C5;0.279653!10080-102A8;0.294878!10760-110E4;0.628027!10709-109H7;0.704991!10710-109H8;0.696218!10703-109H1;0.342461!10719-109I8;0.279105!10642-109A3;0.386017!10177-103C6;0.0697155!10164-103B2;0.0139945!10173-103C2;0.10203!10166-103B4;0.0231637!10083-102B2;0.0631259!10188-103D8;0.0551038!10552-107I3;0.26246!10553-107I4;0.860355!10013-101C4;0.529454!10536-107G5;0.724051!10618-108G6;0.990703!10423-106C9;0.542472!10785-110H2;0.438511!12238-129G6;0.729898!12239-129G7;0.553718!12240-129G8;0.457751!10416-106C2;0.393293!10801-110I9;0.259689!10766-110F1;0.544584!10824-111C5;0.242598!10825-111C6;0.0937725!10826-111C7;0.121321!10454-106G4;0.113953!10409-106B4;0.119086!10638-108I8;0.995517!10636-108I6;0.769621!10513-107D9;0.394725!10420-106C6;0.372906!10082-102B1;0.340948!10014-101C5;0.695791!10070-101I7;0.910961!10452-106G2;0.382423!10453-106G3;0.42672!10449-106F8;0.66326!10042-101F6;0.786264!10069-101I6;0.00216321!10193-103E4;0.651778!10631-108I1;0.0297073!10438-106E6;0.167723!10488-107B2;0.930107!10196-103E7;0.222063!10071-101I8;0.0835379!10071-101I8;0.496323!10041-101F5;0.00951083!10451-106G1;0.99215!10450-106F9;0.815775!10604-108F1;0.750715!10605-108F2;0.840626!10606-108F3;0.5016!10603-108E9;0.995232!10497-107C2;0.727455!10448-106F7;0.878584!10643-109A4;0.74027!10426-106D3;0.290525!10431-106D8;0.85361!10197-103E8;0.620705!10443-106F2;0.372366!10815-111B5;0.597935!10816-111B6;0.652843!10817-111B7;0.969109!10015-101C6;0.714908!10410-106B5;0.985922!10054-101G9;0.960151!10758-110E2;0.115787!10711-109H9;0.136763!10040-101F4;0.112881!10470-106I2;0.0806617!10415-106C1;0.922502!10198-103E9;0.621125!10614-108G2;0.76693!10612-108F9;0.608613!10549-107H9;0.636168!10615-108G3;0.300786!10487-107B1;0.441433!10433-106E1;0.893865!10688-109F4;0.863203!10444-106F3;0.707422!10444-106F3;0.72806!10485-107A8;0.694444!10413-106B8;0.572511!10175-103C4;0.754044!10161-103A8;0.00251001!12131-128D7;0.00226261!10624-108H3;0.170062!10712-109I1;0.0967464!10205-103F7;0.845989!10206-103F8;0.661701!10207-103F9;0.708875!10050-101G5;0.53375!10051-101G6;0.367614!10016-101C7;0.206204!10046-101G1;0.38737!10778-110G4;0.458645!10633-108I3;0.355273!10818-111B8;0.144154!10819-111B9;0.164254!10820-111C1;0.1651!10484-107A7;0.115327!10808-111A7;0.193777!10169-103B7;0.299027!10153-102I9;0.162789!13425-144D5;0.0410587!13433-144E4;0.112314!13437-144E8;0.0695861!11904-125F5;0.138445!11905-125F6;0.094277!10039-101F3;0.0197606!10791-110H8;0.108309!10017-101C8;0.856776!10045-101F9;0.0286494!10509-107D5;0.178976!10839-111E2;0.629053!10692-109F8;0.321534!10079-102A7;0.798497!10078-102A6;0.255638!10721-110A1;0.476647!10569-108B2;0.238306!10570-108B3;0.0908285!10571-108B4;0.019621!10647-109A8;0.0894825!10752-110D5;0.729844!10782-110G8;0.593032!10726-110A6;0.354865!10018-101C9;0.348666!10086-102B5;0.0102249!10182-103D2;0.0118995!10165-103B3;0.00240409!10499-107C4;0.0147703!10408-106B3;0.553976!10019-101D1;0.375416!10068-101I5;0.742288!10075-102A3;0.159101!10077-102A5;0.605719!10727-110A7;0.870482!10775-110G1;0.358132!10412-106B7;0.149347!12231-129F8;0.588964!12232-129F9;0.31058!12233-129G1;0.743604!12234-129G2;0.461855!10414-106B9;0.512515!10170-103B8;0.0272138!10183-103D3;0.390668!10150-102I6;0.150782!10174-103C3;0.0817635!10155-103A2;0.0371422!10038-101F2;0.0251487!10838-111E1;0.00854593!10759-110E3;0.0475698!10514-107E1;0.303022!10465-106H6;0.847907!10691-109F7;0.455112!10843-111E6;0.0190428!10844-111E7;0.0875608!11747-123G1;0.0580142!11748-123G2;0.135094!11749-123G3;0.231103!11750-123G4;0.0770312!11751-123G5;0.0332732!11840-124H4;0.053866!11752-123G6;0.121304!11753-123G7;0.0690889!11754-123G8;0.22197!11755-123G9;0.500974!11756-123H1;0.0252876!11833-124G6;0.09947!11760-123H5;0.113562!11836-124G9;0.120896!11758-123H3;0.209188!11835-124G8;0.0806323!11762-123H7;0.0658261!11838-124H2;0.05947!11757-123H2;0.110358!11759-123H4;0.0626133!11761-123H6;0.0578978!11842-124H6;0.296712!11837-124H1;0.1604!10568-108B1;0.168706!13230-141I8;0.467211!13231-141I9;0.314874!10696-109G3;0.25076!10493-107B7;0.395906!10494-107B8;0.181929!10850-111F4;0.340589!10851-111F5;0.675594!10852-111F6;0.21296!10853-111F7;0.24442!10854-111F8;0.369085!10855-111F9;0.0806132!10856-111G1;0.549006!10847-111F1;0.820214!10846-111E9;0.107967!10848-111F2;0.282377!10845-111E8;0.109097!10857-111G2;0.262538!10858-111G3;0.233471!10156-103A3;0.00758729!11901-125F2;0.030254!11902-125F3;0.17049!11903-125F4;0.271477!10689-109F5;0.182989!10648-109A9;0.0747444!10784-110H1;0.312765!10744-110C6;0.458522!10772-110F7;0.943866!10474-106I6;0.68906!10600-108E6;0.130622!10684-109E9;0.11557!12226-129F3;0.10738!12227-129F4;0.72951!10508-107D4;0.575053!10539-107G8;0.0209669!10607-108F4;0.0659972!10555-107I6;0.0631394!10774-110F9;0.16529!10637-108I7;0.769944!10663-109C6;0.0432211!10728-110A8;0.475169!10729-110A9;0.768787!10430-106D7;0.453313!10730-110B1;0.0320381!10813-111B3;0.674269!10812-111B2;0.615619!10037-101F1;0.855647!10172-103C1;0.071756!10163-103B1;0.211563!10076-102A4;0.0249129!10073-102A1;0.0876372!10036-101E9;0.00350317!10195-103E6;0.104763!10277-104E7;0.0981149!10434-106E2;0.00020055!10550-107I1;0.496463!10545-107H5;0.824724!10544-107H4;0.936777!10704-109H2;0.862475!10510-107D6;0.330588!10558-107I9;0.572636!10020-101D2;0.714715!10732-110B3;0.868665!10049-101G4;0.267279!10698-109G5;0.0640823!10437-106E5;0.292868!10417-106C3;0.00884982!10035-101E8;0.457441!10171-103B9;0.104426!10157-103A4;0.0644104!10034-101E7;0.0832327!10072-101I9;0.0811974!10199-103F1;0.00675771!10200-103F2;0.481764!10697-109G4;0.84034!10723-110A3;0.701859!10179-103C8;0.523484!10160-103A7;0.104477!10180-103C9;0.0905384!10162-103A9;0.702647!10021-101D3;0.929474!10840-111E3;0.803046!10706-109H4;0.359342!10033-101E6;0.266592!10032-101E5;0.0222161!10490-107B4;0.110713!10439-106E7;0.649935!10022-101D4;0.779749!10176-103C5;0.977338!10469-106I1;0.120041!10067-101I4;0.646376!10411-106B6;0.0130565!10471-106I3;0.604036!10030-101E3;0.399105!10475-106I7;0.37134!10787-110H4;0.0809143!10477-106I9;0.47793!10695-109G2;0.163436!11771-123I7;0.312512!11772-123I8;0.702988!11773-123I9;0.0799772!10093-102C3;0.0299273!10442-106F1;0.0663497!10442-106F1;0.0697152!10201-103F3;0.108263!10639-108I9;0.0627742!11843-124H7;0.505214!11841-124H5;0.758799!10693-109F9;0.946021!10436-106E4;0.767067!10483-107A6;0.892631!10282-104F3;0.901573!10023-101D5;0.463121!10066-101I3;0.801365!10065-101I2;0.640241!10800-110I8;0.216904!10610-108F7;0.268637!10841-111E4;0.0131322!10541-107H1;0.397611!10842-111E5;0.0094707!10562-108A4;0.0413554!10024-101D6;0.5817!10064-101I1;0.814604!10609-108F6;0.272273!10048-101G3;0.596221!10781-110G7;0.721152!10181-103D1;0.27021!10159-103A6;0.000249893!10056-101H2;0.000830159!10737-110B8;0.00275318!10025-101D7;0.12418!10044-101F8;0.668731!10424-106D1;0.319273!10463-106H4;0.930938!10616-108G4;0.825057!10486-107A9;0.308588!10062-101H8;0.766711!10202-103F4;0.298948!10158-103A5;0.46104!10441-106E9;0.00359511!10031-101E4;0.167342!10063-101H9;0.119815!10063-101H9;0.0061727!11763-123H8;0.718494!11765-123I1;0.150599!11768-123I4;0.11498!10807-111A6;0.0855689!10790-110H7;0.12638!10798-110I6;0.12429!10786-110H3;0.989051!10591-108D6;0.240681!10593-108D8;0.244069!10590-108D5;0.537662!10026-101D8;0.782909!10096-102C6;0.00998527!10168-103B6;0.0029372!10154-103A1;0.00500625!10209-103G2;0.00250252!10061-101H7;0.431114!10027-101D9;0.377053!10043-101F7;0.0406657!10783-110G9;0.0517405!10028-101E1;0.0701033!10060-101H6;0.13581!10203-103F5;0.793207!10059-101H5;0.826932!10047-101G2;0.64577!10029-101E2;0.911687!10058-101H4;0.553424!10418-106C4;0.715834!10492-107B6;0.153156!10694-109G1;0.296699!10797-110I5;0.542801!10057-101H3;0.47414!10100-102D1;0.383306!10055-101H1;0.749478!10204-103F6;0.141228!10191-103E2;0.447389!10563-108A5;0.807279
|name=SOX2
|name=SOX2
|tomtom_result=SOX10#MA0442.1;-1;1.32625e-05;0.00631297;0.00621157;6;AACAAAG;ACAAAG;-!D#MA00445.1;2;1.74445e-05;0.00830358;0.00621157;7;AACAAAG;AGAACAATGGA;-!Sox2#MA0143.1;7;1.97251e-05;0.00938912;0.00621157;7;AACAAAG;TTTGCATAACAAAGG;-!FKH1#MA0296.1;9;7.47709e-05;0.035591;0.0176595;7;AACAAAG;TGAATTGTAAACAAAGAGGA;+!SOX9#MA0077.1;1;0.000180123;0.0857385;0.0340333;7;AACAAAG;GAACAATGG;+!Pou5f1#MA0142.1;8;0.000307;0.146132;0.0483383;7;AACAAAG;ATTTGCATAACAAAG;-!ROX1#MA0371.1;3;0.000482864;0.229843;0.0651676;7;AACAAAG;GAGAACAATGGA;-!Sox5#MA0087.1;1;0.00177367;0.844266;0.190737;6;AACAAAG;AAACAAT;+!SRY#MA0084.1;3;0.00181708;0.864928;0.190737;6;AACAAAG;GTAAACAAT;+!Foxq1#MA0040.1;4;0.00232419;1.10631;0.219571;7;AACAAAG;AATAAACAATA;-!Sox17#MA0078.1;0;0.00430623;2.04976;0.368302;7;AACAAAG;GACAATGAG;-!HCM1#MA0317.1;3;0.00467821;2.22683;0.368302;5;AACAAAG;ATAAACAA;+!pan#MA0237.1;1;0.00570895;2.71746;0.410582;7;AACAAAG;GATCAAAG;-!FOXF2#MA0030.1;8;0.00608448;2.89621;0.410582;6;AACAAAG;CAAACGTAAACAAT;+!br_Z4#MA0013.1;5;0.00683236;3.25221;0.430313;6;AACAAAG;TAGTAAACAAA;+!FOXD1#MA0031.1;3;0.0136078;6.47731;0.803475;5;AACAAAG;GTAAACAT;+!br_Z3#MA0012.1;2;0.0162278;7.72444;0.901812;7;AACAAAG;TAAACTAAAAG;+!Foxd3#MA0041.1;5;0.0179825;8.55967;0.916376;7;AACAAAG;AAACAAACATTC;-!ttx-3::ceh-10#MA0263.1;2;0.0184299;8.77262;0.916376;7;AACAAAG;TTAACGAAGCCAAT;-
}}
}}

Latest revision as of 13:26, 7 September 2012

Full Name: SOX2

Motif matrix
null

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
SOX10#MA0442.1-11.32625e-050.006312970.006211576AACAAAGACAAAG-
D#MA00445.121.74445e-050.008303580.006211577AACAAAGAGAACAATGGA-
Sox2#MA0143.171.97251e-050.009389120.006211577AACAAAGTTTGCATAACAAAGG-
FKH1#MA0296.197.47709e-050.0355910.01765957AACAAAGTGAATTGTAAACAAAGAGGA+
SOX9#MA0077.110.0001801230.08573850.03403337AACAAAGGAACAATGG+
Pou5f1#MA0142.180.0003070.1461320.04833837AACAAAGATTTGCATAACAAAG-
ROX1#MA0371.130.0004828640.2298430.06516767AACAAAGGAGAACAATGGA-
Sox5#MA0087.110.001773670.8442660.1907376AACAAAGAAACAAT+
SRY#MA0084.130.001817080.8649280.1907376AACAAAGGTAAACAAT+
Foxq1#MA0040.140.002324191.106310.2195717AACAAAGAATAAACAATA-
Sox17#MA0078.100.004306232.049760.3683027AACAAAGGACAATGAG-
HCM1#MA0317.130.004678212.226830.3683025AACAAAGATAAACAA+
pan#MA0237.110.005708952.717460.4105827AACAAAGGATCAAAG-
FOXF2#MA0030.180.006084482.896210.4105826AACAAAGCAAACGTAAACAAT+
br_Z4#MA0013.150.006832363.252210.4303136AACAAAGTAGTAAACAAA+
FOXD1#MA0031.130.01360786.477310.8034755AACAAAGGTAAACAT+
br_Z3#MA0012.120.01622787.724440.9018127AACAAAGTAAACTAAAAG+
Foxd3#MA0041.150.01798258.559670.9163767AACAAAGAAACAAACATTC-
ttx-3::ceh-10#MA0263.120.01842998.772620.9163767AACAAAGTTAACGAAGCCAAT-
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