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MacroAPE 1083:5-CCCGCCTTTA: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;37.556;353.576;28.396;38.472!2;23.358;373.728;22.442;38.472!3;15.114;391.59;23.816;27.48!4;32.518;22.9;365.942;36.64!5;19.236;388.842;28.396...")
 
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0.0624203!10717-109I6;0.259555!10455-106G5;0.00712053!10534-107G3;0.815787!10429-106D6;0.606465!10464-106H5;0.721948!10827-111C8;0.63963!10789-110H6;0.543431!10828-111C9;0.677449!10788-110H5;0.302952!10792-110H9;0.398372!10765-110E9;0.193621!10829-111D1;0.733133!10830-111D2;0.943862!10831-111D3;0.0231318!10832-111D4;0.692139!10833-111D5;0.829827!10764-110E8;0.934439!10770-110F5;0.838867!10399-106A3;0.789754!10400-106A4;0.915842!10405-106A9;0.961101!10834-111D6;0.98534!10835-111D7;0.936954!10836-111D8;0.872953!10837-111D9;0.743164!10699-109G6;0.604785!10802-111A1;0.786192!10796-110I4;0.517458!10010-101C1;0.503648!10810-111A9;0.244926!10421-106C7;0.0312324!10708-109H6;0.60851!12235-129G3;0.00085312!12236-129G4;0.959033!12237-129G5;0.976108!10167-103B5;0.850134!10151-102I7;0.230754!10428-106D5;0.246262!10795-110I3;0.178293!10805-111A4;0.647959!10052-101G7;0.0489103!10189-103D9;0.271517!10589-108D4;0.181962!10425-106D2;0.887986!10427-106D4;0.689165!10702-109G9;0.627644!10432-106D9;0.930551!10496-107C1;0.0418439!10718-109I7;0.771702!10011-101C2;0.799289!10053-101G8;0.334449!10686-109F2;0.205682!10084-102B3;0.0178726!10012-101C3;0.149957!10085-102B4;0.137228!10482-107A5;0.566802!10419-106C5;0.568126!10080-102A8;0.30347!10760-110E4;0.884316!10709-109H7;0.218659!10710-109H8;0.0403473!10703-109H1;0.20907!10719-109I8;0.104636!10642-109A3;0.00750817!10177-103C6;0.139678!10164-103B2;0.128875!10173-103C2;0.128769!10166-103B4;0.414721!10083-102B2;0.318011!10188-103D8;0.177742!10552-107I3;0.196521!10553-107I4;0.316841!10013-101C4;0.0242467!10536-107G5;0.270458!10618-108G6;0.692455!10423-106C9;0.0311169!10785-110H2;0.00579458!12238-129G6;0.162831!12239-129G7;0.64896!12240-129G8;0.256304!10416-106C2;0.276918!10801-110I9;0.674692!10766-110F1;0.578646!10824-111C5;0.288632!10825-111C6;0.238018!10826-111C7;0.280186!10454-106G4;0.252402!10409-106B4;0.392516!10638-108I8;0.736171!10636-108I6;0.0919634!10513-107D9;0.0108868!10420-106C6;0.000374517!10082-102B1;0.029606!10014-101C5;0.628242!10070-101I7;0.246226!10452-106G2;0.534786!10453-106G3;0.926347!10449-106F8;0.713893!10042-101F6;0.619026!10069-101I6;0.163662!10193-103E4;0.332009!10631-108I1;0.0844814!10438-106E6;0.444026!10488-107B2;0.0840422!10196-103E7;0.216432!10071-101I8;0.214213!10071-101I8;0.259112!10041-101F5;0.623889!10451-106G1;0.711015!10450-106F9;0.229016!10604-108F1;0.215878!10605-108F2;0.0684656!10606-108F3;0.172231!10603-108E9;0.0873601!10497-107C2;0.109087!10448-106F7;0.680665!10643-109A4;0.173285!10426-106D3;0.357214!10431-106D8;0.00482369!10197-103E8;0.0679632!10443-106F2;0.0846029!10815-111B5;0.199184!10816-111B6;0.0217584!10817-111B7;0.0179659!10015-101C6;0.0287448!10410-106B5;0.723799!10054-101G9;0.138321!10758-110E2;0.537228!10711-109H9;0.0125607!10040-101F4;0.0797143!10470-106I2;0.11008!10415-106C1;0.00159992!10198-103E9;0.296852!10614-108G2;0.239056!10612-108F9;0.192716!10549-107H9;0.16578!10615-108G3;0.0608872!10487-107B1;0.829499!10433-106E1;0.407751!10688-109F4;0.164839!10444-106F3;0.185106!10444-106F3;0.419589!10485-107A8;0.4442!10413-106B8;0.0163343!10175-103C4;0.0753185!10161-103A8;0.185192!12131-128D7;0.236667!10624-108H3;0.32113!10712-109I1;0.1131!10205-103F7;0.847856!10206-103F8;0.266752!10207-103F9;0.0740606!10050-101G5;0.294281!10051-101G6;0.783657!10016-101C7;0.131569!10046-101G1;0.208012!10778-110G4;0.393949!10633-108I3;0.341962!10818-111B8;0.0186312!10819-111B9;0.00481117!10820-111C1;0.00667838!10484-107A7;0.0075205!10808-111A7;0.505149!10169-103B7;0.453095!10153-102I9;0.188832!13425-144D5;0.294302!13433-144E4;1.65296e-05!13437-144E8;1.46504e-05!11904-125F5;9.12487e-05!11905-125F6;0.374105!10039-101F3;0.674082!10791-110H8;0.114247!10017-101C8;0.0953504!10045-101F9;0.271686!10509-107D5;0.743784!10839-111E2;0.714801!10692-109F8;0.968695!10079-102A7;0.00559996!10078-102A6;0.141684!10721-110A1;0.173017!10569-108B2;0.00540326!10570-108B3;0.62613!10571-108B4;0.207247!10647-109A8;0.902569!10752-110D5;0.103818!10782-110G8;0.74882!10726-110A6;0.901392!10018-101C9;0.00241292!10086-102B5;0.237273!10182-103D2;0.878307!10165-103B3;0.299168!10499-107C4;0.19943!10408-106B3;0.0590656!10019-101D1;0.0845397!10068-101I5;0.6984!10075-102A3;0.706175!10077-102A5;0.291604!10727-110A7;0.113529!10775-110G1;0.973469!10412-106B7;0.559903!12231-129F8;0.337298!12232-129F9;0.546282!12233-129G1;0.275111!12234-129G2;0.516658!10414-106B9;0.606791!10170-103B8;0.0176582!10183-103D3;0.176421!10150-102I6;0.157505!10174-103C3;0.172645!10155-103A2;0.367204!10038-101F2;0.291377!10838-111E1;0.177293!10759-110E3;0.0499825!10514-107E1;0.034628!10465-106H6;0.0294106!10691-109F7;0.732135!10843-111E6;0.90515!10844-111E7;0.402262!11747-123G1;0.0774699!11748-123G2;0.23278!11749-123G3;0.0920956!11750-123G4;0.617931!11751-123G5;0.660019!11840-124H4;0.24996!11752-123G6;0.205997!11753-123G7;0.875992!11754-123G8;0.570696!11755-123G9;0.0765317!11756-123H1;0.0148297!11833-124G6;0.131227!11760-123H5;0.681241!11836-124G9;0.163018!11758-123H3;0.231718!11835-124G8;0.850937!11762-123H7;0.82622!11838-124H2;0.605394!11757-123H2;0.183811!11759-123H4;0.172553!11761-123H6;0.187937!11842-124H6;0.660421!11837-124H1;0.230892!10568-108B1;0.968426!13230-141I8;0.0216324!13231-141I9;0.145506!10696-109G3;0.0925143!10493-107B7;0.219211!10494-107B8;0.0890811!10850-111F4;0.114162!10851-111F5;0.0960883!10852-111F6;0.063833!10853-111F7;0.595868!10854-111F8;0.141646!10855-111F9;0.567319!10856-111G1;0.324963!10847-111F1;0.881848!10846-111E9;0.0706637!10848-111F2;0.72376!10845-111E8;0.359358!10857-111G2;0.216379!10858-111G3;0.0562338!10156-103A3;0.183436!11901-125F2;0.216574!11902-125F3;0.219288!11903-125F4;0.125451!10689-109F5;0.0533298!10648-109A9;0.418548!10784-110H1;0.505408!10744-110C6;0.0680816!10772-110F7;0.474531!10474-106I6;0.640662!10600-108E6;0.180662!10684-109E9;0.00203835!12226-129F3;0.213009!12227-129F4;0.921938!10508-107D4;0.916336!10539-107G8;0.622201!10607-108F4;0.228958!10555-107I6;0.242622!10774-110F9;0.396242!10637-108I7;0.14029!10663-109C6;0.232587!10728-110A8;0.158382!10729-110A9;0.112135!10430-106D7;0.119274!10730-110B1;0.383255!10813-111B3;0.250464!10812-111B2;0.621557!10037-101F1;0.468054!10172-103C1;0.123588!10163-103B1;0.225378!10076-102A4;0.201186!10073-102A1;0.0912506!10036-101E9;0.41689!10195-103E6;0.143393!10277-104E7;0.128727!10434-106E2;0.183988!10550-107I1;0.112379!10545-107H5;0.000327263!10544-107H4;0.306715!10704-109H2;0.214327!10510-107D6;0.676214!10558-107I9;0.174643!10020-101D2;0.0244929!10732-110B3;0.253445!10049-101G4;0.034102!10698-109G5;0.0472293!10437-106E5;0.049204!10417-106C3;0.032065!10035-101E8;0.0150523!10171-103B9;0.12358!10157-103A4;0.171316!10034-101E7;0.187527!10072-101I9;0.128901!10199-103F1;0.732247!10200-103F2;0.0881426!10697-109G4;0.251586!10723-110A3;0.715965!10179-103C8;0.10646!10160-103A7;0.360731!10180-103C9;0.189972!10162-103A9;0.159356!10021-101D3;0.0596442!10840-111E3;0.609511!10706-109H4;0.514782!10033-101E6;0.0304452!10032-101E5;0.11823!10490-107B4;0.113451!10439-106E7;0.00135414!10022-101D4;0.0425701!10176-103C5;0.229199!10469-106I1;0.1395!10067-101I4;0.0177739!10411-106B6;0.616336!10471-106I3;0.434603!10030-101E3;0.582773!10475-106I7;0.433626!10787-110H4;0.216322!10477-106I9;0.0313615!10695-109G2;0.0495275!11771-123I7;0.677005!11772-123I8;0.885765!11773-123I9;0.910681!10093-102C3;0.776343!10442-106F1;0.124778!10442-106F1;0.467767!10201-103F3;0.477664!10639-108I9;0.195884!11843-124H7;0.412599!11841-124H5;0.57797!10693-109F9;0.155588!10436-106E4;0.459077!10483-107A6;0.0998479!10282-104F3;0.0732549!10023-101D5;0.107666!10066-101I3;0.240505!10065-101I2;0.83224!10800-110I8;0.53973!10610-108F7;0.042752!10841-111E4;0.0172242!10541-107H1;0.27489!10842-111E5;0.00343085!10562-108A4;0.252204!10024-101D6;0.0798327!10064-101I1;0.197625!10609-108F6;0.498973!10048-101G3;0.867556!10781-110G7;0.29716!10181-103D1;0.963579!10159-103A6;0.35395!10056-101H2;0.307168!10737-110B8;0.420408!10025-101D7;0.0472823!10044-101F8;0.237074!10424-106D1;0.684313!10463-106H4;0.764345!10616-108G4;0.273678!10486-107A9;0.726961!10062-101H8;0.806113!10202-103F4;0.649381!10158-103A5;0.0602239!10441-106E9;0.254154!10031-101E4;0.0277578!10063-101H9;0.15108!10063-101H9;0.677862!11763-123H8;0.198697!11765-123I1;0.496039!11768-123I4;0.940538!10807-111A6;0.605116!10790-110H7;0.00758816!10798-110I6;0.0330237!10786-110H3;0.117743!10591-108D6;6.90239e-05!10593-108D8;0.00255721!10590-108D5;0.0933966!10026-101D8;0.0076939!10096-102C6;0.338874!10168-103B6;0.974237!10154-103A1;0.319045!10209-103G2;0.18041!10061-101H7;0.319731!10027-101D9;0.807273!10043-101F7;0.269303!10783-110G9;0.592199!10028-101E1;0.0147021!10060-101H6;0.714512!10203-103F5;0.562758!10059-101H5;0.458847!10047-101G2;0.559087!10029-101E2;0.517726!10058-101H4;0.518958!10418-106C4;0.642083!10492-107B6;0.00101952!10694-109G1;0.0775042!10797-110I5;0.0796769!10057-101H3;0.0781541!10100-102D1;0.465765!10055-101H1;0.181743!10204-103F6;0.672974!10191-103E2;0.510176!10563-108A5;0.0877383
|name=5-CCCGCCTTTA,CNhs13822,BestGuess:TFDP1.p2.SwissRegulon.nucfreq(0.705738347845898),T:458.0(23.46%),B:6244.2(13.46%),P:1e-32
|name=5-CCCGCCTTTA,CNhs13822,BestGuess:TFDP1.p2.SwissRegulon.nucfreq(0.705738347845898),T:458.0(23.46%),B:6244.2(13.46%),P:1e-32
|tomtom_result=Klf4#MA0039.1;0;0.0011735;0.558586;0.98519;10;CCCGCCTTTA;CCTTCCTTTA;-!YGR067C#MA0425.1;2;0.00295278;1.40552;0.98519;10;CCCGCCTTTA;ACCCCACTTTTTTG;+!UGA3#MA0410.1;1;0.00313129;1.49049;0.98519;7;CCCGCCTTTA;TCCCGCCG;-!TBP#MA0108.2;2;0.00651965;3.10335;0.98519;10;CCCGCCTTTA;CCCCGCCTTTTATAC;-!TBP#MA0108.2;2;0.00651965;3.10335;0.98519;10;CCCGCCTTTA;CCCCGCCTTTTATAC;-!MIG2#MA0338.1;1;0.00676287;3.21913;0.98519;6;CCCGCCTTTA;CCCCGCA;+!YER130C#MA0423.1;-1;0.00724404;3.44816;0.98519;9;CCCGCCTTTA;ACCCCTATT;+!MIG3#MA0339.1;1;0.00944229;4.49453;1;6;CCCGCCTTTA;CCCCGCA;+!SP1#MA0079.1;2;0.012675;6.03332;1;8;CCCGCCTTTA;ACCCCGCCCC;-!SUT1#MA0399.1;1;0.0129326;6.15592;1;6;CCCGCCTTTA;CCCCGCG;-!CHA4#MA0283.1;2;0.0174462;8.30437;1;6;CCCGCCTTTA;TCTCCGCC;-!btd#MA0443.1;0;0.0174846;8.32269;1;10;CCCGCCTTTA;TCCGCCCCCT;-
}}
}}

Latest revision as of 13:20, 7 September 2012

Full Name: 5-CCCGCCTTTA,CNhs13822,BestGuess:TFDP1.p2.SwissRegulon.nucfreq(0.705738347845898),T:458.0(23.46%),B:6244.2(13.46%),P:1e-32

Motif matrix
POACGT
137.556353.57628.39638.472
223.358373.72822.44238.472
315.114391.5923.81627.48
432.51822.9365.94236.64
519.236388.84228.39621.526
614.656361.8233.43448.09
723.35828.85446.716359.072
842.13637.09817.862360.904
926.56432.97626.106372.354
10338.9216.94650.83851.296

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Klf4#MA0039.100.00117350.5585860.9851910CCCGCCTTTACCTTCCTTTA-
YGR067C#MA0425.120.002952781.405520.9851910CCCGCCTTTAACCCCACTTTTTTG+
UGA3#MA0410.110.003131291.490490.985197CCCGCCTTTATCCCGCCG-
TBP#MA0108.220.006519653.103350.9851910CCCGCCTTTACCCCGCCTTTTATAC-
TBP#MA0108.220.006519653.103350.9851910CCCGCCTTTACCCCGCCTTTTATAC-
MIG2#MA0338.110.006762873.219130.985196CCCGCCTTTACCCCGCA+
YER130C#MA0423.1-10.007244043.448160.985199CCCGCCTTTAACCCCTATT+
MIG3#MA0339.110.009442294.4945316CCCGCCTTTACCCCGCA+
SP1#MA0079.120.0126756.0333218CCCGCCTTTAACCCCGCCCC-
SUT1#MA0399.110.01293266.1559216CCCGCCTTTACCCCGCG-
CHA4#MA0283.120.01744628.3043716CCCGCCTTTATCTCCGCC-
btd#MA0443.100.01748468.32269110CCCGCCTTTATCCGCCCCCT-
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