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MacroAPE 1083:3-AWTTSSYS: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;363.384;0.588;223.44;0.588!2;251.664;0.588;0.588;335.16!3;0.588;0.588;0.588;586.236!4;0.588;0.588;233.436;353.388!5;0.588;264.012;322.812;0....")
 
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I8;0.0089674!12182-129A4;0.00440054!12183-129A5;0.0176721!12184-129A6;0.0121683!10809-111A8;0.0294491!10597-108E3;0.00150034!10717-109I6;0.233059!10455-106G5;0.000225721!10534-107G3;0.150574!10429-106D6;0.108502!10464-106H5;0.0170577!10827-111C8;0.13158!10789-110H6;0.287302!10828-111C9;0.144274!10788-110H5;0.0415487!10792-110H9;0.590658!10765-110E9;0.690612!10829-111D1;0.775291!10830-111D2;0.363433!10831-111D3;0.680997!10832-111D4;0.230011!10833-111D5;0.213856!10764-110E8;0.21889!10770-110F5;0.448078!10399-106A3;0.418712!10400-106A4;0.363024!10405-106A9;0.394541!10834-111D6;0.315645!10835-111D7;0.448083!10836-111D8;0.292839!10837-111D9;0.00325006!10699-109G6;0.271299!10802-111A1;0.316938!10796-110I4;0.0813013!10010-101C1;0.304167!10810-111A9;0.0329094!10421-106C7;0.0649067!10708-109H6;0.129888!12235-129G3;0.00679249!12236-129G4;0.00371814!12237-129G5;0.261396!10167-103B5;0.0021079!10151-102I7;0.526331!10428-106D5;0.535771!10795-110I3;0.815384!10805-111A4;0.96529!10052-101G7;0.155686!10189-103D9;0.367067!10589-108D4;0.59174!10425-106D2;0.341794!10427-106D4;0.0278457!10702-109G9;0.050025!10432-106D9;0.0202898!10496-107C1;0.0721853!10718-109I7;0.378384!10011-101C2;0.541637!10053-101G8;0.160133!10686-109F2;0.00680695!10084-102B3;0.874883!10012-101C3;0.289987!10085-102B4;0.390198!10482-107A5;0.459974!10419-106C5;0.775074!10080-102A8;0.118993!10760-110E4;0.172941!10709-109H7;0.282511!10710-109H8;0.257337!10703-109H1;0.294239!10719-109I8;0.00171293!10642-109A3;0.0155157!10177-103C6;2.08894e-05!10164-103B2;0.53072!10173-103C2;0.535218!10166-103B4;0.899663!10083-102B2;0.997893!10188-103D8;0.727686!10552-107I3;0.308354!10553-107I4;0.0965041!10013-101C4;0.629458!10536-107G5;0.269404!10618-108G6;0.358745!10423-106C9;0.610951!10785-110H2;0.186745!12238-129G6;0.750771!12239-129G7;0.000479314!12240-129G8;0.0325079!10416-106C2;2.04702e-06!10801-110I9;0.294894!10766-110F1;0.807986!10824-111C5;0.511933!10825-111C6;0.0760536!10826-111C7;0.0533845!10454-106G4;0.0411468!10409-106B4;0.181839!10638-108I8;0.0724365!10636-108I6;0.0407964!10513-107D9;0.0134393!10420-106C6;0.0905269!10082-102B1;0.0450758!10014-101C5;0.407673!10070-101I7;0.159992!10452-106G2;0.361198!10453-106G3;0.00195307!10449-106F8;0.000104935!10042-101F6;3.36773e-05!10069-101I6;0.377715!10193-103E4;0.2814!10631-108I1;0.700571!10438-106E6;0.216842!10488-107B2;0.450118!10196-103E7;0.27063!10071-101I8;0.302649!10071-101I8;0.573177!10041-101F5;0.964601!10451-106G1;0.63525!10450-106F9;0.0170062!10604-108F1;0.00182965!10605-108F2;0.106758!10606-108F3;0.942207!10603-108E9;0.337659!10497-107C2;0.224065!10448-106F7;0.0187321!10643-109A4;0.155423!10426-106D3;0.206015!10431-106D8;0.661868!10197-103E8;0.0445726!10443-106F2;0.0669762!10815-111B5;0.0142201!10816-111B6;0.0578078!10817-111B7;0.0267969!10015-101C6;0.0750128!10410-106B5;0.483935!10054-101G9;0.982965!10758-110E2;0.601317!10711-109H9;0.937823!10040-101F4;0.00679961!10470-106I2;0.313286!10415-106C1;0.00883113!10198-103E9;0.952601!10614-108G2;0.134244!10612-108F9;0.448838!10549-107H9;0.477943!10615-108G3;0.000907602!10487-107B1;0.109757!10433-106E1;0.746897!10688-109F4;0.178269!10444-106F3;0.988164!10444-106F3;0.0177506!10485-107A8;0.0242451!10413-106B8;0.0131732!10175-103C4;0.0489699!10161-103A8;0.716195!12131-128D7;0.741741!10624-108H3;0.575678!10712-109I1;0.534248!10205-103F7;0.093478!10206-103F8;0.250502!10207-103F9;0.303533!10050-101G5;0.209069!10051-101G6;0.451377!10016-101C7;0.266569!10046-101G1;0.332697!10778-110G4;0.436252!10633-108I3;0.0880786!10818-111B8;0.00767289!10819-111B9;0.0548209!10820-111C1;0.0597773!10484-107A7;0.042349!10808-111A7;0.167815!10169-103B7;0.0179816!10153-102I9;0.375581!13425-144D5;0.487856!13433-144E4;0.000775214!13437-144E8;0.0011303!11904-125F5;0.00393922!11905-125F6;0.303349!10039-101F3;0.538035!10791-110H8;0.277815!10017-101C8;0.810868!10045-101F9;0.108635!10509-107D5;0.949768!10839-111E2;0.340756!10692-109F8;0.275885!10079-102A7;0.130108!10078-102A6;0.321325!10721-110A1;0.170744!10569-108B2;0.363388!10570-108B3;0.391354!10571-108B4;0.238569!10647-109A8;0.647978!10752-110D5;0.00358488!10782-110G8;0.185773!10726-110A6;0.942802!10018-101C9;0.0617419!10086-102B5;0.032737!10182-103D2;0.813896!10165-103B3;0.908977!10499-107C4;0.984539!10408-106B3;0.769034!10019-101D1;0.72336!10068-101I5;0.339627!10075-102A3;0.462053!10077-102A5;0.0365754!10727-110A7;0.0290806!10775-110G1;0.70853!10412-106B7;0.0972924!12231-129F8;0.0836754!12232-129F9;0.248099!12233-129G1;0.270338!12234-129G2;0.0958748!10414-106B9;0.27157!10170-103B8;0.0258291!10183-103D3;0.380907!10150-102I6;0.316906!10174-103C3;0.444153!10155-103A2;0.555212!10038-101F2;0.995724!10838-111E1;0.83767!10759-110E3;0.0223956!10514-107E1;0.000301325!10465-106H6;0.236481!10691-109F7;0.928777!10843-111E6;0.360173!10844-111E7;0.0011475!11747-123G1;1.01065e-05!11748-123G2;0.616589!11749-123G3;0.515394!11750-123G4;0.18491!11751-123G5;0.0972742!11840-124H4;0.0117414!11752-123G6;0.00430533!11753-123G7;0.744879!11754-123G8;0.245224!11755-123G9;0.967579!11756-123H1;0.455945!11833-124G6;0.615813!11760-123H5;0.118648!11836-124G9;0.702029!11758-123H3;0.50978!11835-124G8;0.180401!11762-123H7;0.288345!11838-124H2;0.216607!11757-123H2;0.507127!11759-123H4;0.784177!11761-123H6;0.240154!11842-124H6;0.869605!11837-124H1;0.481274!10568-108B1;0.107184!13230-141I8;0.0531257!13231-141I9;0.173648!10696-109G3;0.103046!10493-107B7;0.318531!10494-107B8;0.484746!10850-111F4;0.0263848!10851-111F5;0.207412!10852-111F6;0.176857!10853-111F7;0.0908916!10854-111F8;0.281206!10855-111F9;0.354108!10856-111G1;0.60766!10847-111F1;0.204324!10846-111E9;0.00146919!10848-111F2;0.0443777!10845-111E8;0.0181928!10857-111G2;0.0102792!10858-111G3;0.0578745!10156-103A3;0.706626!11901-125F2;0.378604!11902-125F3;0.90297!11903-125F4;0.132544!10689-109F5;0.0487864!10648-109A9;0.0775251!10784-110H1;0.0645825!10744-110C6;0.235653!10772-110F7;0.100297!10474-106I6;0.210904!10600-108E6;0.963627!10684-109E9;0.00242894!12226-129F3;0.0121199!12227-129F4;0.284529!10508-107D4;0.693583!10539-107G8;0.0908738!10607-108F4;0.0083444!10555-107I6;0.0767358!10774-110F9;0.0141671!10637-108I7;0.306716!10663-109C6;0.437129!10728-110A8;0.546271!10729-110A9;0.230842!10430-106D7;0.785646!10730-110B1;0.0130912!10813-111B3;0.384845!10812-111B2;0.774691!10037-101F1;0.132968!10172-103C1;0.388778!10163-103B1;0.390085!10076-102A4;0.485578!10073-102A1;0.293243!10036-101E9;0.925647!10195-103E6;0.255012!10277-104E7;0.338397!10434-106E2;0.322103!10550-107I1;0.337352!10545-107H5;0.0441009!10544-107H4;0.784161!10704-109H2;0.860407!10510-107D6;0.219316!10558-107I9;0.0425577!10020-101D2;0.913109!10732-110B3;0.0151129!10049-101G4;0.533282!10698-109G5;0.000242494!10437-106E5;0.330533!10417-106C3;0.802643!10035-101E8;0.727557!10171-103B9;0.340095!10157-103A4;0.48564!10034-101E7;0.378663!10072-101I9;0.307981!10199-103F1;0.66698!10200-103F2;0.0333641!10697-109G4;0.192499!10723-110A3;0.614035!10179-103C8;0.782066!10160-103A7;0.729128!10180-103C9;0.402131!10162-103A9;0.0948587!10021-101D3;0.185006!10840-111E3;0.0441111!10706-109H4;0.114632!10033-101E6;0.993628!10032-101E5;0.968773!10490-107B4;0.281639!10439-106E7;0.146777!10022-101D4;0.0276252!10176-103C5;0.175957!10469-106I1;0.680002!10067-101I4;0.289418!10411-106B6;0.752676!10471-106I3;0.299433!10030-101E3;0.706022!10475-106I7;0.85496!10787-110H4;0.0260955!10477-106I9;0.0086605!10695-109G2;0.000499097!11771-123I7;0.178393!11772-123I8;0.315138!11773-123I9;0.00885476!10093-102C3;0.114053!10442-106F1;0.00458169!10442-106F1;0.0793248!10201-103F3;0.0429692!10639-108I9;0.274489!11843-124H7;0.379967!11841-124H5;0.126937!10693-109F9;0.300468!10436-106E4;0.921551!10483-107A6;0.355659!10282-104F3;0.777658!10023-101D5;0.0680465!10066-101I3;0.0999049!10065-101I2;0.422864!10800-110I8;0.899653!10610-108F7;0.000121494!10841-111E4;0.171855!10541-107H1;0.080761!10842-111E5;0.00720579!10562-108A4;0.0249435!10024-101D6;0.00261223!10064-101I1;0.041503!10609-108F6;0.647669!10048-101G3;0.00325397!10781-110G7;0.0465428!10181-103D1;0.0553878!10159-103A6;0.965893!10056-101H2;0.930515!10737-110B8;0.637911!10025-101D7;0.714556!10044-101F8;0.292288!10424-106D1;0.830838!10463-106H4;0.103748!10616-108G4;0.653196!10486-107A9;0.768097!10062-101H8;0.787576!10202-103F4;0.445788!10158-103A5;0.0101544!10441-106E9;0.501291!10031-101E4;0.00553405!10063-101H9;0.263421!10063-101H9;0.862491!11763-123H8;0.471462!11765-123I1;0.881549!11768-123I4;0.132861!10807-111A6;0.328559!10790-110H7;1.00379e-07!10798-110I6;5.2189e-05!10786-110H3;5.14347e-05!10591-108D6;0.000193577!10593-108D8;6.04952e-05!10590-108D5;0.0954768!10026-101D8;0.00135334!10096-102C6;0.0447129!10168-103B6;0.743869!10154-103A1;0.73659!10209-103G2;0.709902!10061-101H7;0.462422!10027-101D9;0.686115!10043-101F7;0.209309!10783-110G9;0.369257!10028-101E1;0.0305495!10060-101H6;0.0276152!10203-103F5;0.565566!10059-101H5;0.398615!10047-101G2;0.586743!10029-101E2;0.710807!10058-101H4;0.180663!10418-106C4;0.65976!10492-107B6;0.00347517!10694-109G1;0.0230213!10797-110I5;0.0215516!10057-101H3;0.0833492!10100-102D1;0.843404!10055-101H1;0.0818952!10204-103F6;0.865266!10191-103E2;0.0637046!10563-108A5;0.234241
|name=3-AWTTSSYS,CNhs11931,BestGuess:E2F5_do_HM09(0.711393182766542),T:588.0(39.84%),B:12345.6(26.38%),P:1e-28
|name=3-AWTTSSYS,CNhs11931,BestGuess:E2F5_do_HM09(0.711393182766542),T:588.0(39.84%),B:12345.6(26.38%),P:1e-28
|tomtom_result=E2F1#MA0024.1;-1;0.00028066;0.133594;0.267189;7;ATTTGGCG;TTTGGCGC;+!HAP2#MA0313.1;-2;0.0020139;0.958617;0.536159;5;ATTTGGCG;TTGGT;+!Nobox#MA0125.1;1;0.00225277;1.07232;0.536159;7;ATTTGGCG;TAATTGGT;+!SWI4#MA0401.1;-1;0.00225277;1.07232;0.536159;7;ATTTGGCG;TTTCGCGT;-!ATHB-5#MA0110.1;3;0.00760894;3.62186;1;6;ATTTGGCG;AATAATTGG;-!YPR196W#MA0437.1;0;0.00760894;3.62186;1;8;ATTTGGCG;ATTTCTCCG;+!Dr#MA0188.1;1;0.00874674;4.16345;1;6;ATTTGGCG;TAATTGG;-!AG#MA0005.1;4;0.00894058;4.25571;1;7;ATTTGGCG;CCAAATTTGGT;+!STAT1#MA0137.2;1;0.00990892;4.71665;1;8;ATTTGGCG;CATTTCCCGGAAACC;+!FEV#MA0156.1;0;0.0144856;6.89516;1;8;ATTTGGCG;ATTTCCTG;-!HMG-I/Y#MA0045.1;8;0.0163924;7.80276;1;8;ATTTGGCG;GTTTTTCCATTTGTTG;-!NFYA#MA0060.1;6;0.0176893;8.42008;1;8;ATTTGGCG;GCGCTGATTGGCTGAG;-!HAP3#MA0314.1;4;0.0199541;9.49815;1;8;ATTTGGCG;TCTGATTGGTTCAGA;+
}}
}}

Latest revision as of 13:13, 7 September 2012

Full Name: 3-AWTTSSYS,CNhs11931,BestGuess:E2F5_do_HM09(0.711393182766542),T:588.0(39.84%),B:12345.6(26.38%),P:1e-28

Motif matrix
POACGT
1363.3840.588223.440.588
2251.6640.5880.588335.16
30.5880.5880.588586.236
40.5880.588233.436353.388
50.588264.012322.8120.588
60.588265.776321.0480.588
774.676289.8840.588222.852
80.588256.368330.4560.588

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
E2F1#MA0024.1-10.000280660.1335940.2671897ATTTGGCGTTTGGCGC+
HAP2#MA0313.1-20.00201390.9586170.5361595ATTTGGCGTTGGT+
Nobox#MA0125.110.002252771.072320.5361597ATTTGGCGTAATTGGT+
SWI4#MA0401.1-10.002252771.072320.5361597ATTTGGCGTTTCGCGT-
ATHB-5#MA0110.130.007608943.6218616ATTTGGCGAATAATTGG-
YPR196W#MA0437.100.007608943.6218618ATTTGGCGATTTCTCCG+
Dr#MA0188.110.008746744.1634516ATTTGGCGTAATTGG-
AG#MA0005.140.008940584.2557117ATTTGGCGCCAAATTTGGT+
STAT1#MA0137.210.009908924.7166518ATTTGGCGCATTTCCCGGAAACC+
FEV#MA0156.100.01448566.8951618ATTTGGCGATTTCCTG-
HMG-I/Y#MA0045.180.01639247.8027618ATTTGGCGGTTTTTCCATTTGTTG-
NFYA#MA0060.160.01768938.4200818ATTTGGCGGCGCTGATTGGCTGAG-
HAP3#MA0314.140.01995419.4981518ATTTGGCGTCTGATTGGTTCAGA+
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