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MacroAPE 1083:5-NCTSTCTCTTTN: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;289.38;424.424;285.246;378.95!2;46.852;996.294;293.514;41.34!3;56.498;67.522;434.07;819.91!4;13.78;665.574;639.392;59.254!5;26.182;67.522;45...")
 
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-110H6;0.173583!10828-111C9;0.137466!10788-110H5;0.375506!10792-110H9;0.308943!10765-110E9;0.397224!10829-111D1;0.290859!10830-111D2;0.141884!10831-111D3;0.480528!10832-111D4;0.0870063!10833-111D5;0.433013!10764-110E8;0.327684!10770-110F5;0.355414!10399-106A3;0.455973!10400-106A4;0.27259!10405-106A9;0.219921!10834-111D6;0.256036!10835-111D7;0.300945!10836-111D8;0.381013!10837-111D9;0.0471759!10699-109G6;0.0411136!10802-111A1;0.0683508!10796-110I4;0.0924726!10010-101C1;0.197585!10810-111A9;0.700508!10421-106C7;0.0386275!10708-109H6;0.594381!12235-129G3;0.255747!12236-129G4;0.201492!12237-129G5;0.816255!10167-103B5;0.369493!10151-102I7;0.00614346!10428-106D5;0.00696011!10795-110I3;0.148125!10805-111A4;0.257082!10052-101G7;0.613622!10189-103D9;0.214451!10589-108D4;0.332525!10425-106D2;0.366001!10427-106D4;0.131309!10702-109G9;0.862677!10432-106D9;0.836554!10496-107C1;0.0803494!10718-109I7;0.0184994!10011-101C2;0.430789!10053-101G8;0.171296!10686-109F2;0.616899!10084-102B3;0.659772!10012-101C3;0.00416764!10085-102B4;0.00663828!10482-107A5;0.0202012!10419-106C5;0.0408999!10080-102A8;0.657796!10760-110E4;0.666353!10709-109H7;0.0330475!10710-109H8;0.462687!10703-109H1;0.0193817!10719-109I8;0.304671!10642-109A3;0.757822!10177-103C6;0.196357!10164-103B2;0.00370349!10173-103C2;0.00605405!10166-103B4;0.00208799!10083-102B2;0.002661!10188-103D8;0.00639543!10552-107I3;0.040519!10553-107I4;0.0126663!10013-101C4;0.0862602!10536-107G5;0.24757!10618-108G6;0.557815!10423-106C9;0.00290915!10785-110H2;0.032149!12238-129G6;0.0322879!12239-129G7;0.839086!12240-129G8;0.652741!10416-106C2;0.843251!10801-110I9;0.363554!10766-110F1;0.172601!10824-111C5;0.117605!10825-111C6;0.0732132!10826-111C7;0.123432!10454-106G4;0.0739131!10409-106B4;0.147649!10638-108I8;0.219832!10636-108I6;0.104346!10513-107D9;0.00994004!10420-106C6;0.0892839!10082-102B1;0.86056!10014-101C5;0.497891!10070-101I7;0.5013!10452-106G2;0.195816!10453-106G3;0.724626!10449-106F8;0.896969!10042-101F6;0.882422!10069-101I6;0.00173431!10193-103E4;0.348129!10631-108I1;0.0053126!10438-106E6;0.571594!10488-107B2;0.159041!10196-103E7;0.0950478!10071-101I8;0.359093!10071-101I8;0.088239!10041-101F5;0.0237897!10451-106G1;0.257377!10450-106F9;0.661355!10604-108F1;0.683494!10605-108F2;0.34816!10606-108F3;0.177728!10603-108E9;0.244737!10497-107C2;0.288707!10448-106F7;0.0482568!10643-109A4;0.355334!10426-106D3;0.0388467!10431-106D8;0.243869!10197-103E8;0.273582!10443-106F2;0.476258!10815-111B5;0.828198!10816-111B6;0.050555!10817-111B7;0.050745!10015-101C6;0.0397856!10410-106B5;0.414631!10054-101G9;0.152066!10758-110E2;0.0410302!10711-109H9;0.520978!10040-101F4;0.561428!10470-106I2;0.00723257!10415-106C1;0.199275!10198-103E9;0.528805!10614-108G2;0.441641!10612-108F9;0.585272!10549-107H9;0.244122!10615-108G3;0.0498416!10487-107B1;0.498091!10433-106E1;0.307966!10688-109F4;0.246036!10444-106F3;0.0149698!10444-106F3;0.248878!10485-107A8;0.2665!10413-106B8;0.536505!10175-103C4;0.533261!10161-103A8;0.00191871!12131-128D7;0.00125333!10624-108H3;0.461063!10712-109I1;0.915937!10205-103F7;0.37632!10206-103F8;0.250506!10207-103F9;0.526!10050-101G5;0.41352!10051-101G6;0.206367!10016-101C7;0.513698!10046-101G1;0.918705!10778-110G4;0.162986!10633-108I3;0.717381!10818-111B8;0.223136!10819-111B9;0.165263!10820-111C1;0.13059!10484-107A7;0.161801!10808-111A7;0.640677!10169-103B7;0.455504!10153-102I9;0.00936068!13425-144D5;0.00696427!13433-144E4;0.228255!13437-144E8;0.175805!11904-125F5;0.172086!11905-125F6;0.315445!10039-101F3;0.443533!10791-110H8;0.00628603!10017-101C8;0.0644616!10045-101F9;0.784823!10509-107D5;0.0209841!10839-111E2;0.348987!10692-109F8;0.298208!10079-102A7;0.1365!10078-102A6;0.475139!10721-110A1;0.765359!10569-108B2;0.0101212!10570-108B3;0.547717!10571-108B4;0.296084!10647-109A8;0.368899!10752-110D5;0.911199!10782-110G8;0.0386743!10726-110A6;0.68287!10018-101C9;0.457384!10086-102B5;0.549254!10182-103D2;0.793037!10165-103B3;0.00196442!10499-107C4;0.00219665!10408-106B3;0.00425808!10019-101D1;0.0800764!10068-101I5;0.792974!10075-102A3;0.182068!10077-102A5;0.530709!10727-110A7;0.880648!10775-110G1;0.741888!10412-106B7;0.263305!12231-129F8;0.514229!12232-129F9;0.980241!12233-129G1;0.681322!12234-129G2;0.904717!10414-106B9;0.706298!10170-103B8;0.279942!10183-103D3;0.00380016!10150-102I6;0.0068767!10174-103C3;0.00424691!10155-103A2;0.00733061!10038-101F2;0.00256393!10838-111E1;0.00154286!10759-110E3;0.516042!10514-107E1;0.396741!10465-106H6;0.0111364!10691-109F7;0.000379942!10843-111E6;0.18067!10844-111E7;0.938748!11747-123G1;0.618403!11748-123G2;0.957027!11749-123G3;0.748212!11750-123G4;0.443992!11751-123G5;0.16215!11840-124H4;0.365431!11752-123G6;0.789112!11753-123G7;0.925846!11754-123G8;0.306318!11755-123G9;0.521749!11756-123H1;0.9198!11833-124G6;0.98513!11760-123H5;0.449201!11836-124G9;0.678739!11758-123H3;0.56169!11835-124G8;0.429402!11762-123H7;0.765292!11838-124H2;0.780396!11757-123H2;0.974582!11759-123H4;0.558663!11761-123H6;0.807325!11842-124H6;0.615426!11837-124H1;0.464378!10568-108B1;0.957271!13230-141I8;0.866725!13231-141I9;0.412431!10696-109G3;0.364152!10493-107B7;0.804701!10494-107B8;0.0852085!10850-111F4;0.231011!10851-111F5;0.168282!10852-111F6;0.204285!10853-111F7;0.424419!10854-111F8;0.161828!10855-111F9;0.283376!10856-111G1;0.143426!10847-111F1;0.919466!10846-111E9;0.416444!10848-111F2;0.0525069!10845-111E8;0.1079!10857-111G2;0.0250265!10858-111G3;0.0305043!10156-103A3;0.0886589!11901-125F2;0.00364874!11902-125F3;0.491891!11903-125F4;0.464654!10689-109F5;0.386517!10648-109A9;0.497498!10784-110H1;0.354795!10744-110C6;0.657591!10772-110F7;0.773811!10474-106I6;0.299728!10600-108E6;0.680203!10684-109E9;0.252429!12226-129F3;0.732123!12227-129F4;0.0857577!10508-107D4;0.37558!10539-107G8;0.520774!10607-108F4;0.391379!10555-107I6;0.998948!10774-110F9;0.56042!10637-108I7;0.297113!10663-109C6;0.136632!10728-110A8;0.527591!10729-110A9;0.386556!10430-106D7;0.922596!10730-110B1;0.636087!10813-111B3;0.432428!10812-111B2;0.415214!10037-101F1;0.968228!10172-103C1;0.00615748!10163-103B1;0.00238978!10076-102A4;0.00231016!10073-102A1;0.0130503!10036-101E9;0.0235891!10195-103E6;0.00674313!10277-104E7;0.0066093!10434-106E2;0.0178106!10550-107I1;0.129674!10545-107H5;0.118186!10544-107H4;0.0924121!10704-109H2;0.112513!10510-107D6;0.606174!10558-107I9;0.859729!10020-101D2;0.853827!10732-110B3;0.127815!10049-101G4;0.615871!10698-109G5;0.678795!10437-106E5;0.0443022!10417-106C3;0.37642!10035-101E8;0.284675!10171-103B9;0.00769934!10157-103A4;0.00843892!10034-101E7;0.00297542!10072-101I9;0.00687165!10199-103F1;0.0158352!10200-103F2;0.939082!10697-109G4;0.289283!10723-110A3;0.828014!10179-103C8;0.0311297!10160-103A7;0.0238582!10180-103C9;0.0173878!10162-103A9;0.125907!10021-101D3;0.0333374!10840-111E3;0.531893!10706-109H4;0.986053!10033-101E6;0.955756!10032-101E5;0.0034378!10490-107B4;0.00758254!10439-106E7;0.0284869!10022-101D4;0.275573!10176-103C5;0.163076!10469-106I1;0.00605169!10067-101I4;0.208801!10411-106B6;0.0610949!10471-106I3;0.926718!10030-101E3;0.208664!10475-106I7;0.0272555!10787-110H4;0.909044!10477-106I9;0.469044!10695-109G2;0.767774!11771-123I7;0.384775!11772-123I8;0.584714!11773-123I9;0.735195!10093-102C3;0.998168!10442-106F1;0.483074!10442-106F1;0.420884!10201-103F3;0.55935!10639-108I9;0.271148!11843-124H7;0.101509!11841-124H5;0.441628!10693-109F9;0.457073!10436-106E4;0.0115311!10483-107A6;0.362448!10282-104F3;0.137765!10023-101D5;0.543029!10066-101I3;0.689071!10065-101I2;0.284685!10800-110I8;0.346703!10610-108F7;0.681857!10841-111E4;0.174276!10541-107H1;0.0499025!10842-111E5;0.0732913!10562-108A4;0.653118!10024-101D6;0.234288!10064-101I1;0.592815!10609-108F6;0.365662!10048-101G3;0.910517!10781-110G7;0.139808!10181-103D1;0.525988!10159-103A6;0.00152616!10056-101H2;0.000694934!10737-110B8;0.00675496!10025-101D7;0.710037!10044-101F8;0.975585!10424-106D1;0.597816!10463-106H4;0.713142!10616-108G4;0.114317!10486-107A9;0.291845!10062-101H8;0.223542!10202-103F4;0.181928!10158-103A5;0.731875!10441-106E9;0.0030321!10031-101E4;0.8666!10063-101H9;0.0100589!10063-101H9;0.027818!11763-123H8;0.0992925!11765-123I1;0.751239!11768-123I4;0.377945!10807-111A6;0.994833!10790-110H7;0.230288!10798-110I6;0.286235!10786-110H3;0.771667!10591-108D6;0.0154001!10593-108D8;0.300098!10590-108D5;0.278173!10026-101D8;0.238932!10096-102C6;0.940522!10168-103B6;0.915433!10154-103A1;0.001852!10209-103G2;0.00150608!10061-101H7;0.542869!10027-101D9;0.274185!10043-101F7;0.940601!10783-110G9;0.480374!10028-101E1;0.566776!10060-101H6;0.976468!10203-103F5;0.431781!10059-101H5;0.917588!10047-101G2;0.585721!10029-101E2;0.47094!10058-101H4;0.441644!10418-106C4;0.293231!10492-107B6;0.767151!10694-109G1;0.0788074!10797-110I5;0.296614!10057-101H3;0.489428!10100-102D1;0.507534!10055-101H1;0.206996!10204-103F6;0.295124!10191-103E2;0.708266!10563-108A5;0.609596
|name=5-NCTSTCTCTTTN,CNhs11796,BestGuess:IRF1_si_HM09(0.676521942053904),T:1378.0(27.30%),B:8767.1(20.09%),P:1e-34
|name=5-NCTSTCTCTTTN,CNhs11796,BestGuess:IRF1_si_HM09(0.676521942053904),T:1378.0(27.30%),B:8767.1(20.09%),P:1e-34
|tomtom_result=Trl#MA0205.1;0;0.000392405;0.186785;0.373569;10;CCTCTCTCTTTA;TTGCTCTCTC;+!FKH1#MA0296.1;1;0.00398736;1.89798;1;12;CCTCTCTCTTTA;TCCTCTTTGTTTACAATTCA;-!AZF1#MA0277.1;-2;0.0051626;2.4574;1;9;CCTCTCTCTTTA;TTTCTTTTT;-!TBP#MA0108.2;0;0.00852215;4.05654;1;12;CCTCTCTCTTTA;CCCCGCCTTTTATAC;-!TBP#MA0108.2;0;0.00852215;4.05654;1;12;CCTCTCTCTTTA;CCCCGCCTTTTATAC;-!IRF1#MA0050.1;0;0.00897939;4.27419;1;12;CCTCTCTCTTTA;GGTTTCACTTTC;-!FOXI1#MA0042.1;1;0.0158808;7.55928;1;11;CCTCTCTCTTTA;GGATGTTTGTTT;+!HAP5#MA0316.1;1;0.0165886;7.89615;1;12;CCTCTCTCTTTA;TGGGATCTGATTGGT;+!HAP4#MA0315.1;1;0.0196663;9.36116;1;12;CCTCTCTCTTTA;TCGCCTCTGATTGGT;-
}}
}}

Latest revision as of 13:06, 7 September 2012

Full Name: 5-NCTSTCTCTTTN,CNhs11796,BestGuess:IRF1_si_HM09(0.676521942053904),T:1378.0(27.30%),B:8767.1(20.09%),P:1e-34

Motif matrix
POACGT
1289.38424.424285.246378.95
246.852996.294293.51441.34
356.49867.522434.07819.91
413.78665.574639.39259.254
526.18267.52245.4741238.822
639.9621216.774112.9968.268
766.14453.74252.3641205.75
826.182813.02512.61626.182
913.7862.0152.3641249.846
1079.924139.17871.6561087.242
1113.78187.40835.8281140.984
12447.85325.208344.5261.82

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Trl#MA0205.100.0003924050.1867850.37356910CCTCTCTCTTTATTGCTCTCTC+
FKH1#MA0296.110.003987361.89798112CCTCTCTCTTTATCCTCTTTGTTTACAATTCA-
AZF1#MA0277.1-20.00516262.457419CCTCTCTCTTTATTTCTTTTT-
TBP#MA0108.200.008522154.05654112CCTCTCTCTTTACCCCGCCTTTTATAC-
TBP#MA0108.200.008522154.05654112CCTCTCTCTTTACCCCGCCTTTTATAC-
IRF1#MA0050.100.008979394.27419112CCTCTCTCTTTAGGTTTCACTTTC-
FOXI1#MA0042.110.01588087.55928111CCTCTCTCTTTAGGATGTTTGTTT+
HAP5#MA0316.110.01658867.89615112CCTCTCTCTTTATGGGATCTGATTGGT+
HAP4#MA0315.110.01966639.36116112CCTCTCTCTTTATCGCCTCTGATTGGT-
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