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MacroAPE 1083:Motif TNAGCA: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!01;0;0;0;9392!02;2348;2348;2348;2348!03;9392;0;0;0!04;0;0;9392;0!05;0;9392;0;0!06;9392;0;0;0 |macroape_1083_sample_pvalues=11376-118A8;0.2694...")
 
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;0.378728!10788-110H5;0.562568!10792-110H9;0.227463!10765-110E9;0.591847!10829-111D1;0.395201!10830-111D2;0.383835!10831-111D3;0.353738!10832-111D4;0.293002!10833-111D5;0.10262!10764-110E8;0.278874!10770-110F5;0.0941715!10399-106A3;0.202246!10400-106A4;0.137449!10405-106A9;0.187904!10834-111D6;0.121613!10835-111D7;0.248663!10836-111D8;0.434774!10837-111D9;0.394669!10699-109G6;0.379528!10802-111A1;0.265237!10796-110I4;0.515187!10010-101C1;0.408706!10810-111A9;0.973565!10421-106C7;0.571084!10708-109H6;0.392296!12235-129G3;0.275682!12236-129G4;0.18491!12237-129G5;0.585891!10167-103B5;0.157496!10151-102I7;5.69214e-05!10428-106D5;0.000234972!10795-110I3;0.131176!10805-111A4;0.413208!10052-101G7;0.988224!10189-103D9;0.449944!10589-108D4;0.760937!10425-106D2;0.61479!10427-106D4;0.401878!10702-109G9;0.384341!10432-106D9;0.674935!10496-107C1;0.0885549!10718-109I7;0.316153!10011-101C2;0.427234!10053-101G8;0.60181!10686-109F2;0.972358!10084-102B3;0.174393!10012-101C3;0.000317511!10085-102B4;0.000327576!10482-107A5;0.00668436!10419-106C5;0.232114!10080-102A8;0.479314!10760-110E4;0.702162!10709-109H7;0.511456!10710-109H8;0.147563!10703-109H1;0.121008!10719-109I8;0.586193!10642-109A3;0.944077!10177-103C6;0.890291!10164-103B2;0.000121134!10173-103C2;3.55475e-06!10166-103B4;0.00241256!10083-102B2;0.0015687!10188-103D8;0.000398647!10552-107I3;0.000289166!10553-107I4;0.268071!10013-101C4;0.271209!10536-107G5;0.544718!10618-108G6;0.0864752!10423-106C9;0.52098!10785-110H2;0.406767!12238-129G6;0.24001!12239-129G7;0.290972!12240-129G8;0.407668!10416-106C2;0.861532!10801-110I9;0.8251!10766-110F1;0.611644!10824-111C5;0.414647!10825-111C6;0.531981!10826-111C7;0.521004!10454-106G4;0.523166!10409-106B4;0.421522!10638-108I8;0.2549!10636-108I6;0.210095!10513-107D9;0.377196!10420-106C6;0.797237!10082-102B1;0.685878!10014-101C5;0.93163!10070-101I7;0.345915!10452-106G2;0.54547!10453-106G3;0.140055!10449-106F8;0.317925!10042-101F6;0.258112!10069-101I6;0.00761608!10193-103E4;0.861885!10631-108I1;1.62071e-05!10438-106E6;0.28853!10488-107B2;0.16716!10196-103E7;0.530563!10071-101I8;0.421517!10071-101I8;0.173863!10041-101F5;0.0279111!10451-106G1;0.359841!10450-106F9;0.423856!10604-108F1;0.38212!10605-108F2;0.0214893!10606-108F3;0.0668592!10603-108E9;0.0156122!10497-107C2;0.0348167!10448-106F7;0.740841!10643-109A4;0.608363!10426-106D3;0.53917!10431-106D8;0.359349!10197-103E8;0.17231!10443-106F2;0.311315!10815-111B5;0.174604!10816-111B6;0.168737!10817-111B7;0.0932583!10015-101C6;0.174473!10410-106B5;0.344551!10054-101G9;0.28059!10758-110E2;0.0332864!10711-109H9;0.570958!10040-101F4;0.0713819!10470-106I2;0.000147945!10415-106C1;0.262506!10198-103E9;0.138034!10614-108G2;0.598587!10612-108F9;0.0318637!10549-107H9;0.523863!10615-108G3;0.54995!10487-107B1;0.245572!10433-106E1;0.301564!10688-109F4;0.660589!10444-106F3;0.43127!10444-106F3;0.949559!10485-107A8;0.994923!10413-106B8;0.210396!10175-103C4;0.128205!10161-103A8;0.000451064!12131-128D7;0.0018541!10624-108H3;0.0116883!10712-109I1;0.228344!10205-103F7;0.380814!10206-103F8;0.504949!10207-103F9;0.336689!10050-101G5;0.732102!10051-101G6;0.703686!10016-101C7;0.361342!10046-101G1;0.561813!10778-110G4;0.768056!10633-108I3;0.634318!10818-111B8;0.481075!10819-111B9;0.515545!10820-111C1;0.496667!10484-107A7;0.497931!10808-111A7;0.303686!10169-103B7;0.79254!10153-102I9;0.000633428!13425-144D5;0.0012316!13433-144E4;0.826191!13437-144E8;0.656403!11904-125F5;0.562039!11905-125F6;0.164634!10039-101F3;0.0658249!10791-110H8;0.000137169!10017-101C8;0.712629!10045-101F9;0.261833!10509-107D5;0.6967!10839-111E2;0.287648!10692-109F8;0.564291!10079-102A7;0.130905!10078-102A6;0.313412!10721-110A1;0.462201!10569-108B2;0.586261!10570-108B3;0.107043!10571-108B4;0.158214!10647-109A8;0.195155!10752-110D5;0.429142!10782-110G8;0.19151!10726-110A6;0.670386!10018-101C9;0.221974!10086-102B5;0.494713!10182-103D2;0.766521!10165-103B3;0.00365475!10499-107C4;0.000459864!10408-106B3;0.362085!10019-101D1;0.340479!10068-101I5;0.748825!10075-102A3;0.84213!10077-102A5;0.663072!10727-110A7;0.864275!10775-110G1;0.524872!10412-106B7;0.299558!12231-129F8;0.0527259!12232-129F9;0.0664943!12233-129G1;0.0780955!12234-129G2;0.213765!10414-106B9;0.05899!10170-103B8;0.710628!10183-103D3;0.000116178!10150-102I6;0.000259404!10174-103C3;0.000522613!10155-103A2;0.015746!10038-101F2;0.00714172!10838-111E1;0.00386553!10759-110E3;0.798205!10514-107E1;0.314995!10465-106H6;0.556515!10691-109F7;0.933!10843-111E6;0.183975!10844-111E7;0.780826!11747-123G1;0.331094!11748-123G2;0.458538!11749-123G3;0.419642!11750-123G4;0.668086!11751-123G5;0.975772!11840-124H4;0.788984!11752-123G6;0.976168!11753-123G7;0.867567!11754-123G8;0.979462!11755-123G9;0.420808!11756-123H1;0.635689!11833-124G6;0.627956!11760-123H5;0.71608!11836-124G9;0.527151!11758-123H3;0.805313!11835-124G8;0.995159!11762-123H7;0.488296!11838-124H2;0.340169!11757-123H2;0.693907!11759-123H4;0.503633!11761-123H6;0.927202!11842-124H6;0.513936!11837-124H1;0.998387!10568-108B1;0.395405!13230-141I8;0.38187!13231-141I9;0.938781!10696-109G3;0.963306!10493-107B7;0.723301!10494-107B8;0.097104!10850-111F4;0.158681!10851-111F5;0.693276!10852-111F6;0.0682773!10853-111F7;0.885781!10854-111F8;0.0261353!10855-111F9;0.873167!10856-111G1;0.598604!10847-111F1;0.311528!10846-111E9;0.292644!10848-111F2;0.394578!10845-111E8;0.101001!10857-111G2;0.592652!10858-111G3;0.466374!10156-103A3;0.076269!11901-125F2;0.00028807!11902-125F3;0.408996!11903-125F4;0.469001!10689-109F5;0.463047!10648-109A9;0.0388925!10784-110H1;0.533543!10744-110C6;0.122438!10772-110F7;0.966999!10474-106I6;0.357996!10600-108E6;0.701384!10684-109E9;0.180143!12226-129F3;0.110502!12227-129F4;0.764643!10508-107D4;0.149377!10539-107G8;0.411881!10607-108F4;0.382468!10555-107I6;0.756749!10774-110F9;0.630044!10637-108I7;0.623652!10663-109C6;0.719753!10728-110A8;0.457741!10729-110A9;0.188402!10430-106D7;0.741611!10730-110B1;0.185119!10813-111B3;0.0681133!10812-111B2;0.207925!10037-101F1;0.132409!10172-103C1;0.000133779!10163-103B1;0.00074981!10076-102A4;0.00148294!10073-102A1;0.000191661!10036-101E9;0.0407176!10195-103E6;0.000283625!10277-104E7;0.000277558!10434-106E2;0.0591965!10550-107I1;0.551648!10545-107H5;0.511887!10544-107H4;0.48044!10704-109H2;0.0785771!10510-107D6;0.198446!10558-107I9;0.00795651!10020-101D2;0.314914!10732-110B3;0.992772!10049-101G4;0.224932!10698-109G5;0.0137675!10437-106E5;0.34837!10417-106C3;0.0250776!10035-101E8;0.104403!10171-103B9;0.000177341!10157-103A4;0.000385158!10034-101E7;0.000256133!10072-101I9;0.000221337!10199-103F1;0.0504725!10200-103F2;0.0671679!10697-109G4;0.464566!10723-110A3;0.839652!10179-103C8;0.10478!10160-103A7;0.00291163!10180-103C9;0.00134585!10162-103A9;0.000460923!10021-101D3;0.0016268!10840-111E3;0.626886!10706-109H4;0.168628!10033-101E6;0.0676584!10032-101E5;0.00100075!10490-107B4;0.000165034!10439-106E7;0.187314!10022-101D4;0.122556!10176-103C5;0.549733!10469-106I1;5.23777e-06!10067-101I4;0.255564!10411-106B6;0.461135!10471-106I3;0.189737!10030-101E3;0.250184!10475-106I7;0.0267292!10787-110H4;0.905247!10477-106I9;0.933336!10695-109G2;0.214443!11771-123I7;0.393207!11772-123I8;0.838402!11773-123I9;0.733775!10093-102C3;0.53223!10442-106F1;0.151599!10442-106F1;0.819148!10201-103F3;0.865925!10639-108I9;0.327845!11843-124H7;0.185167!11841-124H5;0.170287!10693-109F9;0.169646!10436-106E4;0.30874!10483-107A6;0.161228!10282-104F3;0.53855!10023-101D5;0.604807!10066-101I3;0.72188!10065-101I2;0.743853!10800-110I8;0.528072!10610-108F7;0.96419!10841-111E4;0.954432!10541-107H1;0.445277!10842-111E5;0.745972!10562-108A4;0.841385!10024-101D6;0.758796!10064-101I1;0.192971!10609-108F6;0.241446!10048-101G3;0.658686!10781-110G7;0.768201!10181-103D1;0.376654!10159-103A6;0.0211005!10056-101H2;0.0182871!10737-110B8;0.0457558!10025-101D7;0.125187!10044-101F8;0.9779!10424-106D1;0.997216!10463-106H4;0.478958!10616-108G4;0.173148!10486-107A9;0.552261!10062-101H8;0.275451!10202-103F4;0.539822!10158-103A5;0.103155!10441-106E9;0.0286414!10031-101E4;0.271191!10063-101H9;0.000207458!10063-101H9;0.0345474!11763-123H8;0.0873939!11765-123I1;0.67834!11768-123I4;0.778114!10807-111A6;0.845154!10790-110H7;0.564647!10798-110I6;0.758229!10786-110H3;0.809649!10591-108D6;0.707259!10593-108D8;0.375231!10590-108D5;0.315711!10026-101D8;0.597613!10096-102C6;0.868913!10168-103B6;0.976568!10154-103A1;0.00127272!10209-103G2;0.000695769!10061-101H7;0.274824!10027-101D9;0.638316!10043-101F7;0.832839!10783-110G9;0.799754!10028-101E1;0.0843959!10060-101H6;0.490563!10203-103F5;0.660742!10059-101H5;0.416474!10047-101G2;0.829839!10029-101E2;0.399217!10058-101H4;0.431289!10418-106C4;0.556429!10492-107B6;0.407694!10694-109G1;0.0329531!10797-110I5;0.316491!10057-101H3;0.125068!10100-102D1;0.620085!10055-101H1;0.770764!10204-103F6;0.754353!10191-103E2;0.999815!10563-108A5;0.466262
|name=motif_TNAGCA
|name=motif_TNAGCA
|tomtom_result=NFE2L2#MA0150.1;5;0.000955188;0.454669;0.909339;6;TAAGCA;ATGACTCAGCA;+!MAC1#MA0326.1;0;0.00315589;1.5022;1;6;TAAGCA;TGAGCAAA;-!YAP7#MA0419.1;5;0.0055037;2.61976;1;6;TAAGCA;ATTAGTAAGCA;+!REST#MA0138.2;0;0.00723879;3.44567;1;6;TAAGCA;TCAGCACCATGGACAGCGC;-!REST#MA0138.2;1;0.00826862;3.93586;1;6;TAAGCA;TTCAGCACCATGGACAGCGCC;+!RTG3#MA0376.1;3;0.0130847;6.22832;1;6;TAAGCA;ATATTAGCACGTGCTTAGTC;+!fkh#MA0446.1;1;0.0172966;8.23317;1;6;TAAGCA;TTAAGCAAACA;-!CEBPA#MA0102.2;1;0.018994;9.04114;1;6;TAAGCA;TTTCGCAAT;+
}}
}}

Latest revision as of 13:01, 7 September 2012

Full Name: motif_TNAGCA

Motif matrix
POACGT
010009392
022348234823482348
039392000
040093920
050939200
069392000

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
NFE2L2#MA0150.150.0009551880.4546690.9093396TAAGCAATGACTCAGCA+
MAC1#MA0326.100.003155891.502216TAAGCATGAGCAAA-
YAP7#MA0419.150.00550372.6197616TAAGCAATTAGTAAGCA+
REST#MA0138.200.007238793.4456716TAAGCATCAGCACCATGGACAGCGC-
REST#MA0138.210.008268623.9358616TAAGCATTCAGCACCATGGACAGCGCC+
RTG3#MA0376.130.01308476.2283216TAAGCAATATTAGCACGTGCTTAGTC+
fkh#MA0446.110.01729668.2331716TAAGCATTAAGCAAACA-
CEBPA#MA0102.210.0189949.0411416TAAGCATTTCGCAAT+
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