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MacroAPE 1083:Motif GGNCAT: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!01;0;0;28992;0!02;0;0;28992;0!03;7248;7248;7248;7248!04;0;28992;0;0!05;28992;0;0;0!06;0;0;0;28992 |macroape_1083_sample_pvalues=11376-118A8;0...")
 
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8!10788-110H5;0.335656!10792-110H9;0.783977!10765-110E9;0.490383!10829-111D1;0.406703!10830-111D2;0.600285!10831-111D3;0.332172!10832-111D4;0.45573!10833-111D5;0.695571!10764-110E8;0.489534!10770-110F5;0.511611!10399-106A3;0.416093!10400-106A4;0.671177!10405-106A9;0.689313!10834-111D6;0.74646!10835-111D7;0.603989!10836-111D8;0.863114!10837-111D9;0.696188!10699-109G6;0.82379!10802-111A1;0.691196!10796-110I4;0.571472!10010-101C1;0.479997!10810-111A9;0.81569!10421-106C7;0.970738!10708-109H6;0.557646!12235-129G3;0.623047!12236-129G4;0.806812!12237-129G5;0.58905!10167-103B5;0.581922!10151-102I7;0.341084!10428-106D5;0.522404!10795-110I3;0.70434!10805-111A4;0.84941!10052-101G7;0.71254!10189-103D9;0.74059!10589-108D4;0.799431!10425-106D2;0.95901!10427-106D4;0.201061!10702-109G9;0.625516!10432-106D9;0.617305!10496-107C1;0.78928!10718-109I7;0.555357!10011-101C2;0.550358!10053-101G8;0.868352!10686-109F2;0.507501!10084-102B3;0.723827!10012-101C3;0.758717!10085-102B4;0.558524!10482-107A5;0.279274!10419-106C5;0.978878!10080-102A8;0.902409!10760-110E4;0.245916!10709-109H7;0.738549!10710-109H8;0.769233!10703-109H1;0.495122!10719-109I8;0.278812!10642-109A3;0.163687!10177-103C6;0.278359!10164-103B2;0.38801!10173-103C2;0.433612!10166-103B4;0.390575!10083-102B2;0.449258!10188-103D8;0.642589!10552-107I3;0.549395!10553-107I4;0.783798!10013-101C4;0.914038!10536-107G5;0.80948!10618-108G6;0.811406!10423-106C9;0.873697!10785-110H2;0.818197!12238-129G6;0.786959!12239-129G7;0.847161!12240-129G8;0.807959!10416-106C2;0.906122!10801-110I9;0.937159!10766-110F1;0.389452!10824-111C5;0.409566!10825-111C6;0.961997!10826-111C7;0.929994!10454-106G4;0.911316!10409-106B4;0.945649!10638-108I8;0.866635!10636-108I6;0.562718!10513-107D9;0.951731!10420-106C6;0.821779!10082-102B1;0.36932!10014-101C5;0.474002!10070-101I7;0.906273!10452-106G2;0.896495!10453-106G3;0.8826!10449-106F8;0.544273!10042-101F6;0.575251!10069-101I6;0.788458!10193-103E4;0.815029!10631-108I1;0.51858!10438-106E6;0.858771!10488-107B2;0.84141!10196-103E7;0.366093!10071-101I8;0.933168!10071-101I8;0.892617!10041-101F5;0.130793!10451-106G1;0.74575!10450-106F9;0.648224!10604-108F1;0.697401!10605-108F2;0.563176!10606-108F3;0.573849!10603-108E9;0.717897!10497-107C2;0.404786!10448-106F7;0.53057!10643-109A4;0.89374!10426-106D3;0.547036!10431-106D8;0.834917!10197-103E8;0.763093!10443-106F2;0.697728!10815-111B5;0.736531!10816-111B6;0.737732!10817-111B7;0.821139!10015-101C6;0.647581!10410-106B5;0.810348!10054-101G9;0.731558!10758-110E2;0.659057!10711-109H9;0.731975!10040-101F4;0.660573!10470-106I2;0.426094!10415-106C1;0.783016!10198-103E9;0.785725!10614-108G2;0.730863!10612-108F9;0.247452!10549-107H9;0.722459!10615-108G3;0.713779!10487-107B1;0.551423!10433-106E1;0.782421!10688-109F4;0.688274!10444-106F3;0.299098!10444-106F3;0.848223!10485-107A8;0.840778!10413-106B8;0.719671!10175-103C4;0.762999!10161-103A8;0.651701!12131-128D7;0.648033!10624-108H3;0.48205!10712-109I1;0.701348!10205-103F7;0.690238!10206-103F8;0.929663!10207-103F9;0.87085!10050-101G5;0.741182!10051-101G6;0.523384!10016-101C7;0.381721!10046-101G1;0.390011!10778-110G4;0.94209!10633-108I3;0.431837!10818-111B8;0.76484!10819-111B9;0.575899!10820-111C1;0.547872!10484-107A7;0.626603!10808-111A7;0.6382!10169-103B7;0.538867!10153-102I9;0.464376!13425-144D5;0.570575!13433-144E4;0.697965!13437-144E8;0.63808!11904-125F5;0.611653!11905-125F6;0.388916!10039-101F3;0.554414!10791-110H8;0.45993!10017-101C8;0.289603!10045-101F9;0.345574!10509-107D5;0.784315!10839-111E2;0.835572!10692-109F8;0.50677!10079-102A7;0.77724!10078-102A6;0.585974!10721-110A1;0.275012!10569-108B2;0.654711!10570-108B3;0.541996!10571-108B4;0.788124!10647-109A8;0.735598!10752-110D5;0.874216!10782-110G8;0.538208!10726-110A6;0.692996!10018-101C9;0.344996!10086-102B5;0.238638!10182-103D2;0.357434!10165-103B3;0.640256!10499-107C4;0.596002!10408-106B3;0.974334!10019-101D1;0.540893!10068-101I5;0.802904!10075-102A3;0.409269!10077-102A5;0.471136!10727-110A7;0.395912!10775-110G1;0.556555!10412-106B7;0.819201!12231-129F8;0.669392!12232-129F9;0.586759!12233-129G1;0.444324!12234-129G2;0.721716!10414-106B9;0.801135!10170-103B8;0.258931!10183-103D3;0.390432!10150-102I6;0.398404!10174-103C3;0.499394!10155-103A2;0.696018!10038-101F2;0.658827!10838-111E1;0.775965!10759-110E3;0.245621!10514-107E1;0.92297!10465-106H6;0.888616!10691-109F7;0.799863!10843-111E6;0.209394!10844-111E7;0.234954!11747-123G1;0.107586!11748-123G2;0.950301!11749-123G3;0.92154!11750-123G4;0.993947!11751-123G5;0.796298!11840-124H4;0.987226!11752-123G6;0.68552!11753-123G7;0.849173!11754-123G8;0.900794!11755-123G9;0.676935!11756-123H1;0.429567!11833-124G6;0.411764!11760-123H5;0.760667!11836-124G9;0.295952!11758-123H3;0.840289!11835-124G8;0.768045!11762-123H7;0.838289!11838-124H2;0.965434!11757-123H2;0.73344!11759-123H4;0.208158!11761-123H6;0.769545!11842-124H6;0.368732!11837-124H1;0.999927!10568-108B1;0.75637!13230-141I8;0.948422!13231-141I9;0.919259!10696-109G3;0.95193!10493-107B7;0.528023!10494-107B8;0.713149!10850-111F4;0.773253!10851-111F5;0.59648!10852-111F6;0.800187!10853-111F7;0.841498!10854-111F8;0.672467!10855-111F9;0.996222!10856-111G1;0.348246!10847-111F1;0.925291!10846-111E9;0.697299!10848-111F2;0.325667!10845-111E8;0.4713!10857-111G2;0.946718!10858-111G3;0.407762!10156-103A3;0.566218!11901-125F2;0.502491!11902-125F3;0.406419!11903-125F4;0.882909!10689-109F5;0.914285!10648-109A9;0.776312!10784-110H1;0.428194!10744-110C6;0.672151!10772-110F7;0.224372!10474-106I6;0.709417!10600-108E6;0.69927!10684-109E9;0.733622!12226-129F3;0.852217!12227-129F4;0.830829!10508-107D4;0.647998!10539-107G8;0.0888405!10607-108F4;0.112892!10555-107I6;0.27403!10774-110F9;0.161122!10637-108I7;0.898786!10663-109C6;0.133236!10728-110A8;0.286707!10729-110A9;0.359969!10430-106D7;0.924459!10730-110B1;0.976917!10813-111B3;0.222582!10812-111B2;0.451201!10037-101F1;0.825234!10172-103C1;0.448052!10163-103B1;0.296459!10076-102A4;0.538388!10073-102A1;0.572726!10036-101E9;0.133127!10195-103E6;0.591242!10277-104E7;0.501747!10434-106E2;0.704596!10550-107I1;0.703111!10545-107H5;0.760713!10544-107H4;0.820365!10704-109H2;0.67971!10510-107D6;0.905061!10558-107I9;0.820567!10020-101D2;0.50497!10732-110B3;0.862638!10049-101G4;0.544273!10698-109G5;0.416911!10437-106E5;0.748617!10417-106C3;0.599435!10035-101E8;0.865469!10171-103B9;0.470737!10157-103A4;0.463225!10034-101E7;0.477266!10072-101I9;0.503799!10199-103F1;0.107624!10200-103F2;0.478189!10697-109G4;0.864525!10723-110A3;0.139398!10179-103C8;0.807335!10160-103A7;0.401681!10180-103C9;0.257794!10162-103A9;0.165286!10021-101D3;0.200333!10840-111E3;0.775261!10706-109H4;0.828963!10033-101E6;0.709015!10032-101E5;0.549316!10490-107B4;0.581338!10439-106E7;0.633351!10022-101D4;0.387809!10176-103C5;0.981107!10469-106I1;0.361747!10067-101I4;0.730173!10411-106B6;0.792841!10471-106I3;0.485802!10030-101E3;0.680602!10475-106I7;0.880699!10787-110H4;0.213712!10477-106I9;0.975264!10695-109G2;0.549775!11771-123I7;0.887903!11772-123I8;0.298885!11773-123I9;0.665801!10093-102C3;0.925804!10442-106F1;0.635741!10442-106F1;0.870577!10201-103F3;0.860449!10639-108I9;0.755591!11843-124H7;0.787744!11841-124H5;0.580005!10693-109F9;0.680748!10436-106E4;0.938725!10483-107A6;0.956695!10282-104F3;0.595167!10023-101D5;0.691906!10066-101I3;0.58278!10065-101I2;0.745196!10800-110I8;0.92362!10610-108F7;0.46155!10841-111E4;0.522823!10541-107H1;0.909598!10842-111E5;0.118324!10562-108A4;0.1221!10024-101D6;0.648667!10064-101I1;0.94806!10609-108F6;0.97395!10048-101G3;0.963829!10781-110G7;0.900811!10181-103D1;0.60077!10159-103A6;0.644307!10056-101H2;0.502992!10737-110B8;0.864013!10025-101D7;0.777456!10044-101F8;0.479535!10424-106D1;0.642456!10463-106H4;0.741218!10616-108G4;0.857031!10486-107A9;0.505038!10062-101H8;0.972848!10202-103F4;0.795658!10158-103A5;0.417576!10441-106E9;0.620407!10031-101E4;0.252268!10063-101H9;0.651068!10063-101H9;0.139653!11763-123H8;0.826964!11765-123I1;0.917277!11768-123I4;0.431532!10807-111A6;0.92269!10790-110H7;0.691537!10798-110I6;0.402603!10786-110H3;0.980818!10591-108D6;0.865753!10593-108D8;0.233127!10590-108D5;0.136723!10026-101D8;0.40985!10096-102C6;0.337192!10168-103B6;0.238785!10154-103A1;0.60903!10209-103G2;0.52142!10061-101H7;0.714778!10027-101D9;0.880418!10043-101F7;0.737704!10783-110G9;0.682462!10028-101E1;0.662305!10060-101H6;0.986044!10203-103F5;0.920664!10059-101H5;0.688075!10047-101G2;0.9244!10029-101E2;0.710358!10058-101H4;0.837607!10418-106C4;0.890247!10492-107B6;0.810524!10694-109G1;0.940314!10797-110I5;0.507225!10057-101H3;0.352402!10100-102D1;0.933765!10055-101H1;0.65597!10204-103F6;0.608556!10191-103E2;0.887444!10563-108A5;0.72134
|name=motif_GGNCAT
|name=motif_GGNCAT
|tomtom_result=TP53#MA0106.1;8;0.00159752;0.76042;0.939589;6;GGACAT;ACATGCCCGGGCATGTCCGG;-!TEA1#MA0405.1;2;0.00255967;1.2184;0.939589;6;GGACAT;GCGGACAT;+!SKN7#MA0381.1;0;0.00486421;2.31537;1;6;GGACAT;GGCCAT;+!ZAP1#MA0440.1;8;0.0129454;6.16199;1;6;GGACAT;ACCTTAAAGGTCATG;+!ESR1#MA0112.1;2;0.0131187;6.24448;1;6;GGACAT;GGGGTCACGGTGACCTGG;-!RXRA::VDR#MA0074.1;1;0.0164243;7.81798;1;6;GGACAT;GGGTCAACGAGTTCA;+!NFE2L1::MafG#MA0089.1;-1;0.0182418;8.6831;1;5;GGACAT;GTCATG;-!PPARG::RXRA#MA0065.1;12;0.0185897;8.84871;1;6;GGACAT;CTAGGGGTCAAAGGTCATCG;+!HAP1#MA0312.1;1;0.0203868;9.70412;1;6;GGACAT;CGGAGATA;+
}}
}}

Latest revision as of 12:53, 7 September 2012

Full Name: motif_GGNCAT

Motif matrix
POACGT
0100289920
0200289920
037248724872487248
0402899200
0528992000
0600028992

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
TP53#MA0106.180.001597520.760420.9395896GGACATACATGCCCGGGCATGTCCGG-
TEA1#MA0405.120.002559671.21840.9395896GGACATGCGGACAT+
SKN7#MA0381.100.004864212.3153716GGACATGGCCAT+
ZAP1#MA0440.180.01294546.1619916GGACATACCTTAAAGGTCATG+
ESR1#MA0112.120.01311876.2444816GGACATGGGGTCACGGTGACCTGG-
RXRA::VDR#MA0074.110.01642437.8179816GGACATGGGTCAACGAGTTCA+
NFE2L1::MafG#MA0089.1-10.01824188.683115GGACATGTCATG-
PPARG::RXRA#MA0065.1120.01858978.8487116GGACATCTAGGGGTCAAAGGTCATCG+
HAP1#MA0312.110.02038689.7041216GGACATCGGAGATA+
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