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MacroAPE 1083:Motif GNATCC: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!01;0;0;11200;0!02;2800;2800;2800;2800!03;11200;0;0;0!04;0;0;0;11200!05;0;11200;0;0!06;0;11200;0;0 |macroape_1083_sample_pvalues=11376-118A8;0...")
 
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5;0.72393!10827-111C8;0.572583!10789-110H6;0.303867!10828-111C9;0.497233!10788-110H5;0.68537!10792-110H9;0.307381!10765-110E9;0.239834!10829-111D1;0.244447!10830-111D2;0.27737!10831-111D3;0.682675!10832-111D4;0.660568!10833-111D5;0.2608!10764-110E8;0.179389!10770-110F5;0.0397817!10399-106A3;0.592513!10400-106A4;0.172191!10405-106A9;0.132736!10834-111D6;0.166506!10835-111D7;0.292207!10836-111D8;0.329749!10837-111D9;0.352563!10699-109G6;0.500579!10802-111A1;0.593231!10796-110I4;0.796109!10010-101C1;0.169751!10810-111A9;0.646829!10421-106C7;0.234993!10708-109H6;0.773798!12235-129G3;0.735996!12236-129G4;0.175963!12237-129G5;0.0629435!10167-103B5;0.169481!10151-102I7;0.434142!10428-106D5;0.292862!10795-110I3;0.277727!10805-111A4;0.839124!10052-101G7;0.107651!10189-103D9;0.990296!10589-108D4;0.928382!10425-106D2;0.384953!10427-106D4;0.615689!10702-109G9;0.353221!10432-106D9;0.79284!10496-107C1;0.570946!10718-109I7;0.052982!10011-101C2;0.354888!10053-101G8;0.899382!10686-109F2;0.00792503!10084-102B3;0.050211!10012-101C3;0.241917!10085-102B4;0.34215!10482-107A5;0.325598!10419-106C5;0.588525!10080-102A8;0.279583!10760-110E4;0.711048!10709-109H7;0.661736!10710-109H8;0.348581!10703-109H1;0.29892!10719-109I8;0.865515!10642-109A3;0.912907!10177-103C6;0.157427!10164-103B2;0.427463!10173-103C2;0.279466!10166-103B4;0.122413!10083-102B2;0.122953!10188-103D8;0.171567!10552-107I3;0.286778!10553-107I4;0.168973!10013-101C4;0.16869!10536-107G5;0.841631!10618-108G6;0.418465!10423-106C9;0.910718!10785-110H2;0.588081!12238-129G6;0.583642!12239-129G7;0.528004!12240-129G8;0.936168!10416-106C2;0.711909!10801-110I9;0.366452!10766-110F1;0.615441!10824-111C5;0.405242!10825-111C6;0.213566!10826-111C7;0.235052!10454-106G4;0.190842!10409-106B4;0.195591!10638-108I8;0.333648!10636-108I6;0.729932!10513-107D9;0.633822!10420-106C6;0.358638!10082-102B1;0.435578!10014-101C5;0.492487!10070-101I7;0.710005!10452-106G2;0.509739!10453-106G3;0.909598!10449-106F8;0.734181!10042-101F6;0.74677!10069-101I6;0.292375!10193-103E4;0.528201!10631-108I1;0.408266!10438-106E6;0.450349!10488-107B2;0.413356!10196-103E7;0.80323!10071-101I8;0.463154!10071-101I8;0.657973!10041-101F5;0.355378!10451-106G1;0.632816!10450-106F9;0.849869!10604-108F1;0.858648!10605-108F2;0.440318!10606-108F3;0.521543!10603-108E9;0.455281!10497-107C2;0.453414!10448-106F7;0.953809!10643-109A4;0.125333!10426-106D3;0.44365!10431-106D8;0.254251!10197-103E8;0.404667!10443-106F2;0.553429!10815-111B5;0.45573!10816-111B6;0.141731!10817-111B7;0.135461!10015-101C6;0.16482!10410-106B5;0.583778!10054-101G9;0.145823!10758-110E2;0.979461!10711-109H9;0.765656!10040-101F4;0.563422!10470-106I2;0.317051!10415-106C1;0.146891!10198-103E9;0.570376!10614-108G2;0.854607!10612-108F9;0.301748!10549-107H9;0.450097!10615-108G3;0.364375!10487-107B1;0.920493!10433-106E1;0.115487!10688-109F4;0.254446!10444-106F3;0.0731331!10444-106F3;0.00943942!10485-107A8;0.0191756!10413-106B8;0.974921!10175-103C4;0.0949058!10161-103A8;0.300519!12131-128D7;0.262123!10624-108H3;0.705805!10712-109I1;0.311143!10205-103F7;0.146408!10206-103F8;0.944238!10207-103F9;0.979329!10050-101G5;0.644835!10051-101G6;0.425849!10016-101C7;0.580956!10046-101G1;0.912198!10778-110G4;0.982244!10633-108I3;0.716626!10818-111B8;0.677269!10819-111B9;0.354311!10820-111C1;0.344872!10484-107A7;0.373112!10808-111A7;0.612033!10169-103B7;0.904351!10153-102I9;0.288634!13425-144D5;0.293897!13433-144E4;0.515922!13437-144E8;0.588136!11904-125F5;0.645317!11905-125F6;0.235361!10039-101F3;0.147276!10791-110H8;0.302813!10017-101C8;0.158928!10045-101F9;0.582728!10509-107D5;0.898475!10839-111E2;0.996736!10692-109F8;0.301684!10079-102A7;0.637405!10078-102A6;0.938687!10721-110A1;0.598051!10569-108B2;0.494695!10570-108B3;0.404012!10571-108B4;0.777001!10647-109A8;0.23475!10752-110D5;0.18184!10782-110G8;0.886496!10726-110A6;0.636846!10018-101C9;0.137167!10086-102B5;0.165924!10182-103D2;0.192131!10165-103B3;0.266412!10499-107C4;0.255269!10408-106B3;0.757985!10019-101D1;0.36895!10068-101I5;0.621234!10075-102A3;0.960459!10077-102A5;0.342676!10727-110A7;0.788165!10775-110G1;0.687757!10412-106B7;0.329344!12231-129F8;0.235717!12232-129F9;0.977625!12233-129G1;0.863352!12234-129G2;0.796141!10414-106B9;0.595292!10170-103B8;0.526508!10183-103D3;0.35926!10150-102I6;0.325335!10174-103C3;0.274684!10155-103A2;0.402797!10038-101F2;0.332186!10838-111E1;0.317923!10759-110E3;0.628759!10514-107E1;0.237953!10465-106H6;0.230606!10691-109F7;0.189009!10843-111E6;0.22017!10844-111E7;0.153102!11747-123G1;0.96992!11748-123G2;0.394682!11749-123G3;0.494248!11750-123G4;0.167491!11751-123G5;0.578469!11840-124H4;0.380662!11752-123G6;0.30078!11753-123G7;0.150905!11754-123G8;0.0438187!11755-123G9;0.0352936!11756-123H1;0.00520277!11833-124G6;0.218141!11760-123H5;0.400794!11836-124G9;0.153668!11758-123H3;0.0427329!11835-124G8;0.403027!11762-123H7;0.122037!11838-124H2;0.780449!11757-123H2;0.692675!11759-123H4;0.973426!11761-123H6;0.040186!11842-124H6;0.5374!11837-124H1;0.0995924!10568-108B1;0.238857!13230-141I8;0.440446!13231-141I9;0.596635!10696-109G3;0.642275!10493-107B7;0.400151!10494-107B8;0.259879!10850-111F4;0.527185!10851-111F5;0.729713!10852-111F6;0.269942!10853-111F7;0.0672588!10854-111F8;0.779438!10855-111F9;0.655188!10856-111G1;0.2232!10847-111F1;0.151379!10846-111E9;0.825377!10848-111F2;0.24182!10845-111E8;0.463574!10857-111G2;0.354016!10858-111G3;0.285954!10156-103A3;0.378041!11901-125F2;0.234467!11902-125F3;0.0942492!11903-125F4;0.276872!10689-109F5;0.5458!10648-109A9;0.438078!10784-110H1;0.617606!10744-110C6;0.471514!10772-110F7;0.8275!10474-106I6;0.138868!10600-108E6;0.395258!10684-109E9;0.224015!12226-129F3;0.0733581!12227-129F4;0.201423!10508-107D4;0.0747446!10539-107G8;0.257703!10607-108F4;0.132815!10555-107I6;0.421114!10774-110F9;0.0446119!10637-108I7;0.83938!10663-109C6;0.61455!10728-110A8;0.896821!10729-110A9;0.789541!10430-106D7;0.640718!10730-110B1;0.21267!10813-111B3;0.403225!10812-111B2;0.186357!10037-101F1;0.566378!10172-103C1;0.306232!10163-103B1;0.333199!10076-102A4;0.22364!10073-102A1;0.294199!10036-101E9;0.33722!10195-103E6;0.272559!10277-104E7;0.346571!10434-106E2;0.136422!10550-107I1;0.170698!10545-107H5;0.448558!10544-107H4;0.0794366!10704-109H2;0.558056!10510-107D6;0.919275!10558-107I9;0.200938!10020-101D2;0.0626564!10732-110B3;0.768594!10049-101G4;0.572468!10698-109G5;0.129529!10437-106E5;0.70158!10417-106C3;0.720743!10035-101E8;0.506382!10171-103B9;0.302946!10157-103A4;0.278845!10034-101E7;0.273039!10072-101I9;0.29834!10199-103F1;0.307668!10200-103F2;0.204322!10697-109G4;0.540877!10723-110A3;0.563527!10179-103C8;0.129775!10160-103A7;0.49205!10180-103C9;0.411726!10162-103A9;0.63494!10021-101D3;0.483515!10840-111E3;0.990436!10706-109H4;0.759924!10033-101E6;0.703095!10032-101E5;0.300597!10490-107B4;0.309954!10439-106E7;0.649136!10022-101D4;0.836533!10176-103C5;0.847632!10469-106I1;0.282042!10067-101I4;0.345358!10411-106B6;0.710367!10471-106I3;0.88586!10030-101E3;0.788052!10475-106I7;0.531059!10787-110H4;0.940422!10477-106I9;0.0203468!10695-109G2;0.69635!11771-123I7;0.0207331!11772-123I8;0.311256!11773-123I9;0.163999!10093-102C3;0.51873!10442-106F1;0.414588!10442-106F1;0.517504!10201-103F3;0.412193!10639-108I9;0.637267!11843-124H7;0.407546!11841-124H5;0.60879!10693-109F9;0.686578!10436-106E4;0.458292!10483-107A6;0.178707!10282-104F3;0.120729!10023-101D5;0.207584!10066-101I3;0.371432!10065-101I2;0.787573!10800-110I8;0.578567!10610-108F7;0.462983!10841-111E4;0.93105!10541-107H1;0.377172!10842-111E5;0.793462!10562-108A4;0.902805!10024-101D6;0.833451!10064-101I1;0.448746!10609-108F6;0.481139!10048-101G3;0.629632!10781-110G7;0.748505!10181-103D1;0.790751!10159-103A6;0.347167!10056-101H2;0.299034!10737-110B8;0.359818!10025-101D7;0.684239!10044-101F8;0.744481!10424-106D1;0.846473!10463-106H4;0.913461!10616-108G4;0.313332!10486-107A9;0.865548!10062-101H8;0.135989!10202-103F4;0.526059!10158-103A5;0.350546!10441-106E9;0.305664!10031-101E4;0.387192!10063-101H9;0.277948!10063-101H9;0.312191!11763-123H8;0.549662!11765-123I1;0.439944!11768-123I4;0.371968!10807-111A6;0.607371!10790-110H7;0.668125!10798-110I6;0.548724!10786-110H3;0.513398!10591-108D6;0.664732!10593-108D8;0.3798!10590-108D5;0.506157!10026-101D8;0.810993!10096-102C6;0.849663!10168-103B6;0.811849!10154-103A1;0.302925!10209-103G2;0.288571!10061-101H7;0.34442!10027-101D9;0.598767!10043-101F7;0.0943134!10783-110G9;0.344191!10028-101E1;0.682071!10060-101H6;0.197708!10203-103F5;0.324622!10059-101H5;0.297145!10047-101G2;0.41863!10029-101E2;0.457339!10058-101H4;0.515927!10418-106C4;0.495951!10492-107B6;0.541208!10694-109G1;0.566586!10797-110I5;0.125511!10057-101H3;0.860819!10100-102D1;0.541549!10055-101H1;0.528956!10204-103F6;0.845652!10191-103E2;0.649779!10563-108A5;0.607616
|name=motif_GNATCC
|name=motif_GNATCC
|tomtom_result=TBS1#MA0404.1;1;0.00167868;0.799051;0.726789;6;GAATCC;CGGATCCG;+!NFKB1#MA0105.1;3;0.0030241;1.43947;0.726789;6;GAATCC;GGGGAATCCCC;-!Gata1#MA0035.1;0;0.00305451;1.45395;0.726789;6;GAATCC;CCATCC;-!GATA2#MA0036.1;-1;0.0048492;2.30822;0.923053;5;GAATCC;TATCC;-!ETS1#MA0098.1;-1;0.0198557;9.45129;0.999747;5;GAATCC;CTTCCG;+!bcd#MA0212.1;0;0.0198557;9.45129;0.999747;6;GAATCC;TAATCC;+
}}
}}

Latest revision as of 12:48, 7 September 2012

Full Name: motif_GNATCC

Motif matrix
POACGT
0100112000
022800280028002800
0311200000
0400011200
0501120000
0601120000

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
TBS1#MA0404.110.001678680.7990510.7267896GAATCCCGGATCCG+
NFKB1#MA0105.130.00302411.439470.7267896GAATCCGGGGAATCCCC-
Gata1#MA0035.100.003054511.453950.7267896GAATCCCCATCC-
GATA2#MA0036.1-10.00484922.308220.9230535GAATCCTATCC-
ETS1#MA0098.1-10.01985579.451290.9997475GAATCCCTTCCG+
bcd#MA0212.100.01985579.451290.9997476GAATCCTAATCC+
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