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MacroAPE 1083:AGTTTCCGC,motif855: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;324.242;38.802;34.342;48.614!2;52.628;58.426;295.252;39.694!3;7.582;7.582;24.976;405.86!4;20.07;16.948;53.074;355.908!5;34.788;15.164;33.45;...")
 
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H6;0.307023!10828-111C9;0.450577!10788-110H5;0.43151!10792-110H9;0.836834!10765-110E9;0.505819!10829-111D1;0.483721!10830-111D2;0.985084!10831-111D3;0.564539!10832-111D4;0.121112!10833-111D5;0.324946!10764-110E8;0.376438!10770-110F5;0.354802!10399-106A3;0.731315!10400-106A4;0.396039!10405-106A9;0.360238!10834-111D6;0.409576!10835-111D7;0.36373!10836-111D8;0.392662!10837-111D9;0.76396!10699-109G6;0.433557!10802-111A1;0.0695412!10796-110I4;0.884941!10010-101C1;0.667515!10810-111A9;0.598881!10421-106C7;0.809639!10708-109H6;0.712346!12235-129G3;0.746604!12236-129G4;0.312845!12237-129G5;0.14115!10167-103B5;0.352234!10151-102I7;0.0421097!10428-106D5;0.115404!10795-110I3;0.00740366!10805-111A4;0.498191!10052-101G7;0.837891!10189-103D9;0.747984!10589-108D4;0.461385!10425-106D2;0.125722!10427-106D4;0.641493!10702-109G9;0.739567!10432-106D9;0.585108!10496-107C1;0.337439!10718-109I7;0.551764!10011-101C2;0.913184!10053-101G8;0.974147!10686-109F2;0.681994!10084-102B3;0.635405!10012-101C3;0.0561358!10085-102B4;0.0692388!10482-107A5;0.0499214!10419-106C5;0.31466!10080-102A8;0.130468!10760-110E4;0.329833!10709-109H7;0.776975!10710-109H8;0.73659!10703-109H1;0.842151!10719-109I8;0.102226!10642-109A3;0.361277!10177-103C6;0.650543!10164-103B2;0.10076!10173-103C2;0.0757769!10166-103B4;0.182493!10083-102B2;0.253502!10188-103D8;0.0742528!10552-107I3;0.0518068!10553-107I4;0.94097!10013-101C4;0.578544!10536-107G5;0.964295!10618-108G6;0.511215!10423-106C9;0.867976!10785-110H2;0.573449!12238-129G6;0.889914!12239-129G7;0.278095!12240-129G8;0.516081!10416-106C2;0.210006!10801-110I9;0.888664!10766-110F1;0.149477!10824-111C5;0.396837!10825-111C6;0.920994!10826-111C7;0.828122!10454-106G4;0.920069!10409-106B4;0.882254!10638-108I8;0.195088!10636-108I6;0.561103!10513-107D9;0.533677!10420-106C6;0.801663!10082-102B1;0.788656!10014-101C5;0.96543!10070-101I7;0.696358!10452-106G2;0.800054!10453-106G3;0.222083!10449-106F8;0.581679!10042-101F6;0.549549!10069-101I6;0.229592!10193-103E4;0.635212!10631-108I1;0.125828!10438-106E6;0.711565!10488-107B2;0.986461!10196-103E7;0.433369!10071-101I8;0.840334!10071-101I8;0.98932!10041-101F5;0.149103!10451-106G1;0.774483!10450-106F9;0.398158!10604-108F1;0.495383!10605-108F2;0.538578!10606-108F3;0.418414!10603-108E9;0.264217!10497-107C2;0.470874!10448-106F7;0.340692!10643-109A4;0.0730772!10426-106D3;0.254433!10431-106D8;0.964265!10197-103E8;0.734384!10443-106F2;0.557514!10815-111B5;0.646534!10816-111B6;0.748959!10817-111B7;0.989108!10015-101C6;0.791553!10410-106B5;0.844054!10054-101G9;0.696856!10758-110E2;0.484989!10711-109H9;0.411622!10040-101F4;0.0414182!10470-106I2;0.0615311!10415-106C1;0.93327!10198-103E9;0.851243!10614-108G2;0.929598!10612-108F9;0.39057!10549-107H9;0.420563!10615-108G3;0.645484!10487-107B1;0.549097!10433-106E1;0.909623!10688-109F4;0.439359!10444-106F3;0.864407!10444-106F3;0.543902!10485-107A8;0.361073!10413-106B8;0.897836!10175-103C4;0.0815159!10161-103A8;0.172057!12131-128D7;0.278128!10624-108H3;0.236034!10712-109I1;0.524252!10205-103F7;0.80628!10206-103F8;0.789128!10207-103F9;0.572755!10050-101G5;0.218432!10051-101G6;0.299423!10016-101C7;0.202711!10046-101G1;0.500137!10778-110G4;0.795181!10633-108I3;0.671011!10818-111B8;0.903896!10819-111B9;0.322369!10820-111C1;0.333413!10484-107A7;0.314988!10808-111A7;0.262635!10169-103B7;0.728525!10153-102I9;0.0406022!13425-144D5;0.183809!13433-144E4;0.903807!13437-144E8;0.573838!11904-125F5;0.611247!11905-125F6;0.641881!10039-101F3;0.586446!10791-110H8;0.0645172!10017-101C8;0.694223!10045-101F9;0.474932!10509-107D5;0.478516!10839-111E2;0.371029!10692-109F8;0.191927!10079-102A7;0.399172!10078-102A6;0.563009!10721-110A1;0.427199!10569-108B2;0.557178!10570-108B3;0.0820584!10571-108B4;0.168138!10647-109A8;0.464251!10752-110D5;0.222591!10782-110G8;0.546376!10726-110A6;0.7307!10018-101C9;0.538375!10086-102B5;0.0750629!10182-103D2;0.660845!10165-103B3;0.162826!10499-107C4;0.264686!10408-106B3;0.209949!10019-101D1;0.15062!10068-101I5;0.633275!10075-102A3;0.433339!10077-102A5;0.543085!10727-110A7;0.356156!10775-110G1;0.742526!10412-106B7;0.362194!12231-129F8;0.581336!12232-129F9;0.829364!12233-129G1;0.993247!12234-129G2;0.962358!10414-106B9;0.939099!10170-103B8;0.997364!10183-103D3;0.0351059!10150-102I6;0.0536659!10174-103C3;0.0862497!10155-103A2;0.103471!10038-101F2;0.281568!10838-111E1;0.167124!10759-110E3;0.848544!10514-107E1;0.444236!10465-106H6;0.544005!10691-109F7;0.119386!10843-111E6;0.409461!10844-111E7;0.473215!11747-123G1;0.665941!11748-123G2;0.834966!11749-123G3;0.814144!11750-123G4;0.802536!11751-123G5;0.9075!11840-124H4;0.706736!11752-123G6;0.486901!11753-123G7;0.939151!11754-123G8;0.95847!11755-123G9;0.229551!11756-123H1;0.0300277!11833-124G6;0.0885979!11760-123H5;0.267175!11836-124G9;0.0933738!11758-123H3;0.310937!11835-124G8;0.952474!11762-123H7;0.750048!11838-124H2;0.800475!11757-123H2;0.705348!11759-123H4;0.242836!11761-123H6;0.311146!11842-124H6;0.708646!11837-124H1;0.204793!10568-108B1;0.900428!13230-141I8;0.292255!13231-141I9;0.713932!10696-109G3;0.622436!10493-107B7;0.185058!10494-107B8;0.902784!10850-111F4;0.692085!10851-111F5;0.672194!10852-111F6;0.182546!10853-111F7;0.406119!10854-111F8;0.667342!10855-111F9;0.73825!10856-111G1;0.719121!10847-111F1;0.261552!10846-111E9;0.767053!10848-111F2;0.783185!10845-111E8;0.730669!10857-111G2;0.634928!10858-111G3;0.591155!10156-103A3;0.468295!11901-125F2;0.134404!11902-125F3;0.789951!11903-125F4;0.989652!10689-109F5;0.957539!10648-109A9;0.440446!10784-110H1;0.595367!10744-110C6;0.560157!10772-110F7;0.462164!10474-106I6;0.251606!10600-108E6;0.87696!10684-109E9;0.24701!12226-129F3;0.188307!12227-129F4;0.167708!10508-107D4;0.160564!10539-107G8;0.490064!10607-108F4;0.787745!10555-107I6;0.707309!10774-110F9;0.701816!10637-108I7;0.737816!10663-109C6;0.200987!10728-110A8;0.85811!10729-110A9;0.870894!10430-106D7;0.766119!10730-110B1;0.276495!10813-111B3;0.0482557!10812-111B2;0.370041!10037-101F1;0.311469!10172-103C1;0.0704722!10163-103B1;0.0630284!10076-102A4;0.191097!10073-102A1;0.0433768!10036-101E9;0.100332!10195-103E6;0.0579385!10277-104E7;0.0615693!10434-106E2;0.122426!10550-107I1;0.874532!10545-107H5;0.618621!10544-107H4;0.537388!10704-109H2;0.650673!10510-107D6;0.794873!10558-107I9;0.474706!10020-101D2;0.0849207!10732-110B3;0.791373!10049-101G4;0.498568!10698-109G5;0.430512!10437-106E5;0.192431!10417-106C3;0.752752!10035-101E8;0.442626!10171-103B9;0.0493848!10157-103A4;0.0498367!10034-101E7;0.098084!10072-101I9;0.0624022!10199-103F1;0.161384!10200-103F2;0.710529!10697-109G4;0.967764!10723-110A3;0.622881!10179-103C8;0.384191!10160-103A7;0.0817506!10180-103C9;0.142322!10162-103A9;0.022662!10021-101D3;0.171134!10840-111E3;0.154181!10706-109H4;0.974931!10033-101E6;0.349595!10032-101E5;0.0893336!10490-107B4;0.0481219!10439-106E7;0.587184!10022-101D4;0.904471!10176-103C5;0.938852!10469-106I1;0.056918!10067-101I4;0.791153!10411-106B6;0.871582!10471-106I3;0.763076!10030-101E3;0.401377!10475-106I7;0.629018!10787-110H4;0.495867!10477-106I9;0.862847!10695-109G2;0.417199!11771-123I7;0.622913!11772-123I8;0.993001!11773-123I9;0.971205!10093-102C3;0.81335!10442-106F1;0.861971!10442-106F1;0.363577!10201-103F3;0.324357!10639-108I9;0.800739!11843-124H7;0.766685!11841-124H5;0.0744615!10693-109F9;0.778894!10436-106E4;0.925188!10483-107A6;0.933746!10282-104F3;0.723545!10023-101D5;0.420782!10066-101I3;0.837486!10065-101I2;0.731538!10800-110I8;0.825246!10610-108F7;0.18268!10841-111E4;0.581954!10541-107H1;0.538206!10842-111E5;0.354289!10562-108A4;0.360396!10024-101D6;0.140961!10064-101I1;0.419388!10609-108F6;0.689845!10048-101G3;0.585888!10781-110G7;0.848744!10181-103D1;0.274079!10159-103A6;0.27351!10056-101H2;0.487524!10737-110B8;0.270375!10025-101D7;0.936962!10044-101F8;0.16995!10424-106D1;0.238126!10463-106H4;0.996811!10616-108G4;0.676642!10486-107A9;0.737094!10062-101H8;0.625814!10202-103F4;0.737839!10158-103A5;0.416435!10441-106E9;0.520076!10031-101E4;0.24311!10063-101H9;0.0636293!10063-101H9;0.132266!11763-123H8;0.60983!11765-123I1;0.834866!11768-123I4;0.735027!10807-111A6;0.706671!10790-110H7;0.604199!10798-110I6;0.603328!10786-110H3;0.264704!10591-108D6;0.755488!10593-108D8;0.937152!10590-108D5;0.802364!10026-101D8;0.740977!10096-102C6;0.451731!10168-103B6;0.64584!10154-103A1;0.202709!10209-103G2;0.353606!10061-101H7;0.830068!10027-101D9;0.970573!10043-101F7;0.0223035!10783-110G9;0.0157044!10028-101E1;0.656457!10060-101H6;0.576562!10203-103F5;0.658607!10059-101H5;0.83826!10047-101G2;0.672608!10029-101E2;0.405412!10058-101H4;0.643506!10418-106C4;0.863171!10492-107B6;0.219271!10694-109G1;0.501676!10797-110I5;0.107777!10057-101H3;0.958247!10100-102D1;0.896532!10055-101H1;0.913926!10204-103F6;0.810877!10191-103E2;0.256922!10563-108A5;0.683605
|name=AGTTTCCGC,motif855,CNhs11086,T:446.0(21.91%),B:8660.3(13.01%),P:1e-27
|name=AGTTTCCGC,motif855,CNhs11086,T:446.0(21.91%),B:8660.3(13.01%),P:1e-27
|tomtom_result=RDR1#MA0360.1;-2;0.0013087;0.62294;0.651184;7;AGTTTCCGC;GTTCCGCA;-!YRM1#MA0438.1;-1;0.00136803;0.651184;0.651184;8;AGTTTCCGC;ATTTCCGT;-!HAL9#MA0311.1;-3;0.00215247;1.02457;0.68305;5;AGTTTCCGC;TTCCG;-!ETS1#MA0098.1;-2;0.00376893;1.79401;0.897005;6;AGTTTCCGC;CTTCCG;+!SPIB#MA0081.1;-3;0.0059363;2.82568;0.92398;6;AGTTTCCGC;TTCCTCT;-!CHA4#MA0283.1;-2;0.00634278;3.01916;0.92398;7;AGTTTCCGC;TCTCCGCC;-!YRR1#MA0439.1;2;0.00930036;4.42697;0.92398;9;AGTTTCCGC;CTTATCTCCGC;+!Eip74EF#MA0026.1;-2;0.00930529;4.42932;0.92398;7;AGTTTCCGC;CTTCCGG;-!CEP3#MA0282.1;-2;0.0112091;5.33554;0.92398;7;AGTTTCCGC;TTTCCGAG;-!YKL222C#MA0428.1;-1;0.0112662;5.36269;0.92398;8;AGTTTCCGC;ATTTCCGTT;-!PDR8#MA0354.1;-1;0.0120637;5.74232;0.92398;8;AGTTTCCGC;ATCTCCGT;-!RELA#MA0107.1;3;0.0122714;5.84118;0.92398;7;AGTTTCCGC;GGGAATTTCC;+!TEA1#MA0405.1;-1;0.0139549;6.64251;0.92398;8;AGTTTCCGC;ATGCCCGC;-!DAL82#MA0291.1;0;0.0147894;7.03975;0.92398;9;AGTTTCCGC;AATGTGCGC;+!THI2#MA0407.1;8;0.0150073;7.14349;0.92398;7;AGTTTCCGC;GTTCTTAGAGTTTCC;-!RGT1#MA0367.1;2;0.0165408;7.87341;0.92398;9;AGTTTCCGC;AATTTTTCCGG;+!STAT1#MA0137.2;0;0.0172673;8.21924;0.92398;9;AGTTTCCGC;GGTTTCCGGGAAATG;-!ELF5#MA0136.1;0;0.0174702;8.31582;0.92398;9;AGTTTCCGC;TACTTCCTT;+!STAT1#MA0137.2;1;0.0197782;9.41442;0.945217;9;AGTTTCCGC;CAGTTTCATTTTCC;-!Mafb#MA0117.1;-1;0.0198575;9.45217;0.945217;8;AGTTTCCGC;GCGTCAGC;-
}}
}}

Latest revision as of 12:46, 7 September 2012

Full Name: AGTTTCCGC,motif855,CNhs11086,T:446.0(21.91%),B:8660.3(13.01%),P:1e-27

Motif matrix
POACGT
1324.24238.80234.34248.614
252.62858.426295.25239.694
37.5827.58224.976405.86
420.0716.94853.074355.908
534.78815.16433.45362.598
66.69372.4118.28648.614
779.834321.1221.85423.192
829.88219.624345.20451.29
937.91343.4242.3722.3

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
RDR1#MA0360.1-20.00130870.622940.6511847AGTTTCCGCGTTCCGCA-
YRM1#MA0438.1-10.001368030.6511840.6511848AGTTTCCGCATTTCCGT-
HAL9#MA0311.1-30.002152471.024570.683055AGTTTCCGCTTCCG-
ETS1#MA0098.1-20.003768931.794010.8970056AGTTTCCGCCTTCCG+
SPIB#MA0081.1-30.00593632.825680.923986AGTTTCCGCTTCCTCT-
CHA4#MA0283.1-20.006342783.019160.923987AGTTTCCGCTCTCCGCC-
YRR1#MA0439.120.009300364.426970.923989AGTTTCCGCCTTATCTCCGC+
Eip74EF#MA0026.1-20.009305294.429320.923987AGTTTCCGCCTTCCGG-
CEP3#MA0282.1-20.01120915.335540.923987AGTTTCCGCTTTCCGAG-
YKL222C#MA0428.1-10.01126625.362690.923988AGTTTCCGCATTTCCGTT-
PDR8#MA0354.1-10.01206375.742320.923988AGTTTCCGCATCTCCGT-
RELA#MA0107.130.01227145.841180.923987AGTTTCCGCGGGAATTTCC+
TEA1#MA0405.1-10.01395496.642510.923988AGTTTCCGCATGCCCGC-
DAL82#MA0291.100.01478947.039750.923989AGTTTCCGCAATGTGCGC+
THI2#MA0407.180.01500737.143490.923987AGTTTCCGCGTTCTTAGAGTTTCC-
RGT1#MA0367.120.01654087.873410.923989AGTTTCCGCAATTTTTCCGG+
STAT1#MA0137.200.01726738.219240.923989AGTTTCCGCGGTTTCCGGGAAATG-
ELF5#MA0136.100.01747028.315820.923989AGTTTCCGCTACTTCCTT+
STAT1#MA0137.210.01977829.414420.9452179AGTTTCCGCCAGTTTCATTTTCC-
Mafb#MA0117.1-10.01985759.452170.9452178AGTTTCCGCGCGTCAGC-
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