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MacroAPE 1083:7-GCWGCATT: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;1.335;1.335;1330.995;1.335!2;1.335;1330.995;1.335;1.335!3;710.22;1.335;1.335;622.11!4;1.335;1.335;1021.275;311.055!5;105.465;779.64;218.94;2...")
 
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.130475!10809-111A8;0.0886211!10597-108E3;0.0418282!10717-109I6;0.256718!10455-106G5;0.1527!10534-107G3;0.0976628!10429-106D6;0.0679094!10464-106H5;0.0135261!10827-111C8;0.058833!10789-110H6;0.0265124!10828-111C9;0.0322266!10788-110H5;0.0573996!10792-110H9;0.00158094!10765-110E9;0.00813066!10829-111D1;0.013531!10830-111D2;0.00585086!10831-111D3;0.0744087!10832-111D4;0.0212323!10833-111D5;0.0204879!10764-110E8;0.0237046!10770-110F5;0.0330353!10399-106A3;0.0983694!10400-106A4;0.0279471!10405-106A9;0.0197184!10834-111D6;0.0188422!10835-111D7;0.0198149!10836-111D8;0.153313!10837-111D9;0.0352237!10699-109G6;0.0826129!10802-111A1;0.0217407!10796-110I4;0.112893!10010-101C1;0.14251!10810-111A9;0.411835!10421-106C7;0.321304!10708-109H6;0.119619!12235-129G3;0.0127193!12236-129G4;0.449265!12237-129G5;0.560945!10167-103B5;0.709078!10151-102I7;0.00253488!10428-106D5;0.00373654!10795-110I3;0.462131!10805-111A4;0.0473603!10052-101G7;0.136279!10189-103D9;0.0350296!10589-108D4;0.468123!10425-106D2;0.358639!10427-106D4;0.646914!10702-109G9;0.391919!10432-106D9;0.118109!10496-107C1;0.106968!10718-109I7;0.122924!10011-101C2;0.032364!10053-101G8;0.209927!10686-109F2;0.0924483!10084-102B3;0.872953!10012-101C3;0.00160201!10085-102B4;0.000717217!10482-107A5;0.0092279!10419-106C5;0.013106!10080-102A8;0.0678921!10760-110E4;0.671646!10709-109H7;0.11866!10710-109H8;0.0361122!10703-109H1;0.0303803!10719-109I8;0.833505!10642-109A3;0.579763!10177-103C6;0.586956!10164-103B2;0.0028626!10173-103C2;0.00456833!10166-103B4;0.0214229!10083-102B2;0.0213022!10188-103D8;0.0130942!10552-107I3;0.00116315!10553-107I4;0.0095649!10013-101C4;0.349903!10536-107G5;0.130477!10618-108G6;0.296863!10423-106C9;0.0308808!10785-110H2;0.00927035!12238-129G6;0.0140325!12239-129G7;0.0912071!12240-129G8;0.752402!10416-106C2;0.0516621!10801-110I9;0.0253785!10766-110F1;0.0163876!10824-111C5;0.0539888!10825-111C6;0.103216!10826-111C7;0.0974217!10454-106G4;0.108717!10409-106B4;0.134244!10638-108I8;0.04162!10636-108I6;0.0108624!10513-107D9;0.0291352!10420-106C6;0.0206071!10082-102B1;0.313311!10014-101C5;0.314752!10070-101I7;0.799924!10452-106G2;0.407212!10453-106G3;0.820718!10449-106F8;0.777898!10042-101F6;0.781901!10069-101I6;0.0174824!10193-103E4;0.078436!10631-108I1;0.00322722!10438-106E6;0.25804!10488-107B2;0.059659!10196-103E7;0.0380297!10071-101I8;0.372249!10071-101I8;0.166754!10041-101F5;0.00501565!10451-106G1;0.0379909!10450-106F9;0.210835!10604-108F1;0.184135!10605-108F2;0.0308762!10606-108F3;0.0177206!10603-108E9;0.0472636!10497-107C2;0.0168188!10448-106F7;0.0351612!10643-109A4;0.0792459!10426-106D3;0.0184685!10431-106D8;0.0568389!10197-103E8;0.166361!10443-106F2;0.169809!10815-111B5;0.683964!10816-111B6;0.0233801!10817-111B7;0.017828!10015-101C6;0.0138749!10410-106B5;0.577141!10054-101G9;0.125528!10758-110E2;0.0156718!10711-109H9;0.458089!10040-101F4;0.0656611!10470-106I2;0.000689093!10415-106C1;0.0424654!10198-103E9;0.198196!10614-108G2;0.141904!10612-108F9;0.347353!10549-107H9;0.00441957!10615-108G3;0.161792!10487-107B1;0.807037!10433-106E1;0.090721!10688-109F4;0.00970809!10444-106F3;0.00494888!10444-106F3;0.370515!10485-107A8;0.278855!10413-106B8;0.361649!10175-103C4;0.766201!10161-103A8;0.00201301!12131-128D7;0.0186119!10624-108H3;0.107761!10712-109I1;0.0471972!10205-103F7;0.46701!10206-103F8;0.0193354!10207-103F9;0.0280217!10050-101G5;0.110298!10051-101G6;0.908353!10016-101C7;0.312443!10046-101G1;0.183288!10778-110G4;0.0827923!10633-108I3;0.0332265!10818-111B8;0.00158101!10819-111B9;0.00353624!10820-111C1;0.00433864!10484-107A7;0.00330351!10808-111A7;0.0812294!10169-103B7;0.359091!10153-102I9;0.00225164!13425-144D5;0.00579228!13433-144E4;0.303518!13437-144E8;0.226243!11904-125F5;0.288469!11905-125F6;0.112376!10039-101F3;0.0282775!10791-110H8;0.000732476!10017-101C8;0.0836313!10045-101F9;0.728562!10509-107D5;0.440773!10839-111E2;0.00274222!10692-109F8;0.925205!10079-102A7;0.451497!10078-102A6;0.0499842!10721-110A1;0.225797!10569-108B2;0.0499866!10570-108B3;0.103367!10571-108B4;0.0574557!10647-109A8;0.0430432!10752-110D5;0.69163!10782-110G8;0.0830709!10726-110A6;0.924039!10018-101C9;0.31616!10086-102B5;0.0467009!10182-103D2;0.0257463!10165-103B3;0.00479357!10499-107C4;0.0153917!10408-106B3;0.115929!10019-101D1;0.166269!10068-101I5;0.586811!10075-102A3;0.191194!10077-102A5;0.85323!10727-110A7;0.136078!10775-110G1;0.197916!10412-106B7;0.0584629!12231-129F8;0.204221!12232-129F9;0.745823!12233-129G1;0.854729!12234-129G2;0.971561!10414-106B9;0.566549!10170-103B8;0.102604!10183-103D3;0.00109589!10150-102I6;0.000900916!10174-103C3;0.00158443!10155-103A2;0.0229442!10038-101F2;0.0248606!10838-111E1;0.00889764!10759-110E3;0.93192!10514-107E1;0.0906435!10465-106H6;0.279204!10691-109F7;0.254787!10843-111E6;0.790809!10844-111E7;0.544392!11747-123G1;0.918982!11748-123G2;0.134455!11749-123G3;0.0698877!11750-123G4;0.0456686!11751-123G5;0.105669!11840-124H4;0.151253!11752-123G6;0.325613!11753-123G7;0.0230408!11754-123G8;0.0257082!11755-123G9;0.0147875!11756-123H1;0.0519636!11833-124G6;0.0330053!11760-123H5;0.349414!11836-124G9;0.0284834!11758-123H3;0.0732428!11835-124G8;0.0204872!11762-123H7;0.0127351!11838-124H2;0.0504505!11757-123H2;0.0433894!11759-123H4;0.0331664!11761-123H6;0.0451051!11842-124H6;0.025761!11837-124H1;0.0184049!10568-108B1;0.0526038!13230-141I8;0.0394394!13231-141I9;0.0499643!10696-109G3;0.0573643!10493-107B7;0.0268961!10494-107B8;0.100258!10850-111F4;0.0525521!10851-111F5;0.849733!10852-111F6;0.260458!10853-111F7;0.866574!10854-111F8;0.183157!10855-111F9;0.99435!10856-111G1;0.822457!10847-111F1;0.0767577!10846-111E9;0.314591!10848-111F2;0.301773!10845-111E8;0.979916!10857-111G2;0.0424272!10858-111G3;0.260853!10156-103A3;0.17947!11901-125F2;0.00166306!11902-125F3;0.0164079!11903-125F4;0.0743549!10689-109F5;0.0856807!10648-109A9;0.0355018!10784-110H1;0.0314616!10744-110C6;0.0455287!10772-110F7;0.560065!10474-106I6;0.0131393!10600-108E6;0.200287!10684-109E9;0.760505!12226-129F3;0.119211!12227-129F4;0.123169!10508-107D4;0.248475!10539-107G8;0.478665!10607-108F4;0.331544!10555-107I6;0.664586!10774-110F9;0.386418!10637-108I7;0.555695!10663-109C6;0.463343!10728-110A8;0.688475!10729-110A9;0.7225!10430-106D7;0.156109!10730-110B1;0.00925735!10813-111B3;0.31389!10812-111B2;0.182647!10037-101F1;0.316596!10172-103C1;0.000988881!10163-103B1;0.000999062!10076-102A4;0.00244115!10073-102A1;0.000653278!10036-101E9;0.00366428!10195-103E6;0.000840044!10277-104E7;0.00133097!10434-106E2;0.0779504!10550-107I1;0.0223189!10545-107H5;0.104748!10544-107H4;0.10624!10704-109H2;0.199597!10510-107D6;0.889711!10558-107I9;0.224751!10020-101D2;0.552681!10732-110B3;0.0669519!10049-101G4;0.794983!10698-109G5;0.267933!10437-106E5;0.0254016!10417-106C3;0.081899!10035-101E8;0.0620978!10171-103B9;0.000692083!10157-103A4;0.000997847!10034-101E7;0.00147192!10072-101I9;0.000870035!10199-103F1;0.00612819!10200-103F2;0.079088!10697-109G4;0.160975!10723-110A3;0.560822!10179-103C8;0.542131!10160-103A7;0.0158296!10180-103C9;0.0268652!10162-103A9;0.0137895!10021-101D3;0.0158719!10840-111E3;0.559148!10706-109H4;0.336237!10033-101E6;0.148262!10032-101E5;0.00261774!10490-107B4;0.000739266!10439-106E7;0.126501!10022-101D4;0.0728904!10176-103C5;0.118382!10469-106I1;0.00261145!10067-101I4;0.298068!10411-106B6;0.107174!10471-106I3;0.067664!10030-101E3;0.388542!10475-106I7;0.0168078!10787-110H4;0.545792!10477-106I9;0.698512!10695-109G2;0.179762!11771-123I7;0.0247132!11772-123I8;0.0962082!11773-123I9;0.990991!10093-102C3;0.870969!10442-106F1;0.108242!10442-106F1;0.473057!10201-103F3;0.415574!10639-108I9;0.2878!11843-124H7;0.30306!11841-124H5;0.278297!10693-109F9;0.0502501!10436-106E4;0.0154685!10483-107A6;0.00531144!10282-104F3;0.00366115!10023-101D5;0.863207!10066-101I3;0.30624!10065-101I2;0.0435957!10800-110I8;0.100838!10610-108F7;0.477366!10841-111E4;0.780138!10541-107H1;0.708732!10842-111E5;0.27379!10562-108A4;0.975075!10024-101D6;0.825497!10064-101I1;0.584331!10609-108F6;0.461718!10048-101G3;0.888036!10781-110G7;0.175212!10181-103D1;0.918576!10159-103A6;0.00843632!10056-101H2;0.0229224!10737-110B8;0.010206!10025-101D7;0.389685!10044-101F8;0.388539!10424-106D1;0.529922!10463-106H4;0.233417!10616-108G4;0.0262321!10486-107A9;0.174857!10062-101H8;0.0436877!10202-103F4;0.348093!10158-103A5;0.145378!10441-106E9;0.05066!10031-101E4;0.908068!10063-101H9;0.00107017!10063-101H9;0.00603677!11763-123H8;0.106869!11765-123I1;0.363576!11768-123I4;0.163624!10807-111A6;0.280432!10790-110H7;0.415466!10798-110I6;0.18532!10786-110H3;0.117267!10591-108D6;0.240545!10593-108D8;0.259308!10590-108D5;0.663102!10026-101D8;0.0767796!10096-102C6;0.425358!10168-103B6;0.955001!10154-103A1;0.00707428!10209-103G2;0.010609!10061-101H7;0.429816!10027-101D9;0.0900696!10043-101F7;0.0586781!10783-110G9;0.35245!10028-101E1;0.450769!10060-101H6;0.680717!10203-103F5;0.280352!10059-101H5;0.353618!10047-101G2;0.0450855!10029-101E2;0.31503!10058-101H4;0.793961!10418-106C4;0.0426655!10492-107B6;0.368178!10694-109G1;0.364509!10797-110I5;0.331286!10057-101H3;0.0502457!10100-102D1;0.0424739!10055-101H1;0.138761!10204-103F6;0.165402!10191-103E2;0.315846!10563-108A5;0.576571
|name=7-GCWGCATT,CNhs10647,BestGuess:TEAD3_si_HM09(0.646559830684259),T:1335.0(33.51%),B:10900.0(24.70%),P:1e-35
|name=7-GCWGCATT,CNhs10647,BestGuess:TEAD3_si_HM09(0.646559830684259),T:1335.0(33.51%),B:10900.0(24.70%),P:1e-35
|tomtom_result=mab-3#MA0262.1;5;0.00923006;4.39351;1;8;GCAGCATT;AATTCGCAACATT;-!Pax6#MA0069.1;5;0.00944155;4.49418;1;8;GCAGCATT;TTCACGCATGAGTT;+
}}
}}

Latest revision as of 12:43, 7 September 2012

Full Name: 7-GCWGCATT,CNhs10647,BestGuess:TEAD3_si_HM09(0.646559830684259),T:1335.0(33.51%),B:10900.0(24.70%),P:1e-35

Motif matrix
POACGT
11.3351.3351330.9951.335
21.3351330.9951.3351.335
3710.221.3351.335622.11
41.3351.3351021.275311.055
5105.465779.64218.94230.955
6818.3551.3351.335513.975
7509.971.33514.685809.01
81.335148.1851.3351184.145

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
mab-3#MA0262.150.009230064.3935118GCAGCATTAATTCGCAACATT-
Pax6#MA0069.150.009441554.4941818GCAGCATTTTCACGCATGAGTT+
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