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MacroAPE 1083:Motif GCNGAT: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!01;0;0;3264;0!02;0;3264;0;0!03;816;816;816;816!04;0;0;3264;0!05;3264;0;0;0!06;0;0;0;3264 |macroape_1083_sample_pvalues=11376-118A8;0.168209!1...")
 
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46!10534-107G3;0.305694!10429-106D6;0.360782!10464-106H5;0.403432!10827-111C8;0.259476!10789-110H6;0.0620966!10828-111C9;0.166151!10788-110H5;0.124622!10792-110H9;0.103855!10765-110E9;0.0395059!10829-111D1;0.148722!10830-111D2;0.155249!10831-111D3;0.0271261!10832-111D4;0.0989372!10833-111D5;0.23904!10764-110E8;0.257733!10770-110F5;0.0950156!10399-106A3;0.0201559!10400-106A4;0.323256!10405-106A9;0.302642!10834-111D6;0.246644!10835-111D7;0.139727!10836-111D8;0.355285!10837-111D9;0.227419!10699-109G6;0.289926!10802-111A1;0.0412334!10796-110I4;0.0789298!10010-101C1;0.249213!10810-111A9;0.913534!10421-106C7;0.270665!10708-109H6;0.289533!12235-129G3;0.914814!12236-129G4;0.249953!12237-129G5;0.850815!10167-103B5;0.0956282!10151-102I7;0.332477!10428-106D5;0.282806!10795-110I3;0.956917!10805-111A4;0.197164!10052-101G7;0.61323!10189-103D9;0.846839!10589-108D4;0.869865!10425-106D2;0.340626!10427-106D4;0.405467!10702-109G9;0.221602!10432-106D9;0.240991!10496-107C1;0.72128!10718-109I7;0.300434!10011-101C2;0.181173!10053-101G8;0.59112!10686-109F2;0.278607!10084-102B3;0.734611!10012-101C3;0.409078!10085-102B4;0.358777!10482-107A5;0.169231!10419-106C5;0.415605!10080-102A8;0.544583!10760-110E4;0.993188!10709-109H7;0.128636!10710-109H8;0.188244!10703-109H1;0.236705!10719-109I8;0.881256!10642-109A3;0.827278!10177-103C6;0.0502723!10164-103B2;0.433631!10173-103C2;0.319819!10166-103B4;0.332497!10083-102B2;0.226567!10188-103D8;0.242873!10552-107I3;0.407765!10553-107I4;0.287326!10013-101C4;0.503709!10536-107G5;0.390589!10618-108G6;0.845371!10423-106C9;0.401015!10785-110H2;0.292515!12238-129G6;0.900321!12239-129G7;0.407718!12240-129G8;0.0427463!10416-106C2;0.984698!10801-110I9;0.128086!10766-110F1;0.0545513!10824-111C5;0.0366594!10825-111C6;0.319223!10826-111C7;0.400421!10454-106G4;0.424677!10409-106B4;0.60213!10638-108I8;0.164202!10636-108I6;0.322872!10513-107D9;0.123875!10420-106C6;0.398553!10082-102B1;0.563946!10014-101C5;0.942964!10070-101I7;0.847722!10452-106G2;0.667603!10453-106G3;0.806044!10449-106F8;0.924137!10042-101F6;0.815767!10069-101I6;0.430338!10193-103E4;0.754168!10631-108I1;0.425439!10438-106E6;0.376134!10488-107B2;0.439217!10196-103E7;0.605846!10071-101I8;0.985096!10071-101I8;0.647201!10041-101F5;0.109679!10451-106G1;0.665706!10450-106F9;0.81365!10604-108F1;0.739024!10605-108F2;0.520164!10606-108F3;0.560799!10603-108E9;0.633834!10497-107C2;0.515627!10448-106F7;0.046388!10643-109A4;0.231758!10426-106D3;0.162691!10431-106D8;0.326667!10197-103E8;0.287012!10443-106F2;0.881361!10815-111B5;0.490897!10816-111B6;0.196515!10817-111B7;0.217261!10015-101C6;0.163588!10410-106B5;0.646859!10054-101G9;0.554884!10758-110E2;0.232418!10711-109H9;0.954165!10040-101F4;0.900303!10470-106I2;0.354129!10415-106C1;0.175598!10198-103E9;0.199968!10614-108G2;0.975542!10612-108F9;0.64402!10549-107H9;0.224756!10615-108G3;0.593726!10487-107B1;0.409707!10433-106E1;0.370971!10688-109F4;0.822277!10444-106F3;0.107622!10444-106F3;0.816634!10485-107A8;0.578764!10413-106B8;0.549908!10175-103C4;0.898157!10161-103A8;0.420239!12131-128D7;0.354816!10624-108H3;0.0132642!10712-109I1;0.0785956!10205-103F7;0.57219!10206-103F8;0.423904!10207-103F9;0.59898!10050-101G5;0.473801!10051-101G6;0.324544!10016-101C7;0.475149!10046-101G1;0.451498!10778-110G4;0.229452!10633-108I3;0.374897!10818-111B8;0.400113!10819-111B9;0.334144!10820-111C1;0.354601!10484-107A7;0.35725!10808-111A7;0.751545!10169-103B7;0.430978!10153-102I9;0.388042!13425-144D5;0.356298!13433-144E4;0.682033!13437-144E8;0.715905!11904-125F5;0.690324!11905-125F6;0.115866!10039-101F3;0.0936167!10791-110H8;0.349587!10017-101C8;0.664654!10045-101F9;0.562049!10509-107D5;0.744541!10839-111E2;0.523263!10692-109F8;0.386637!10079-102A7;0.708002!10078-102A6;0.527218!10721-110A1;0.59328!10569-108B2;0.392549!10570-108B3;0.285584!10571-108B4;0.521718!10647-109A8;0.161741!10752-110D5;0.73927!10782-110G8;0.531348!10726-110A6;0.511277!10018-101C9;0.724436!10086-102B5;0.484098!10182-103D2;0.894798!10165-103B3;0.373139!10499-107C4;0.280571!10408-106B3;0.26604!10019-101D1;0.137567!10068-101I5;0.597379!10075-102A3;0.764177!10077-102A5;0.96604!10727-110A7;0.604789!10775-110G1;0.245645!10412-106B7;0.315543!12231-129F8;0.583105!12232-129F9;0.31996!12233-129G1;0.433208!12234-129G2;0.523261!10414-106B9;0.283467!10170-103B8;0.70585!10183-103D3;0.369354!10150-102I6;0.390287!10174-103C3;0.376892!10155-103A2;0.417037!10038-101F2;0.339979!10838-111E1;0.355069!10759-110E3;0.211042!10514-107E1;0.402944!10465-106H6;0.716187!10691-109F7;0.424296!10843-111E6;0.524206!10844-111E7;0.652755!11747-123G1;0.134269!11748-123G2;0.255972!11749-123G3;0.0284304!11750-123G4;0.224601!11751-123G5;0.62689!11840-124H4;0.494852!11752-123G6;0.615009!11753-123G7;0.15462!11754-123G8;0.0438013!11755-123G9;0.0595618!11756-123H1;0.0768414!11833-124G6;0.108761!11760-123H5;0.279902!11836-124G9;0.105906!11758-123H3;0.0858017!11835-124G8;0.069975!11762-123H7;0.179842!11838-124H2;0.517775!11757-123H2;0.36639!11759-123H4;0.349756!11761-123H6;0.235112!11842-124H6;0.0700229!11837-124H1;0.29973!10568-108B1;0.248074!13230-141I8;0.0908861!13231-141I9;0.102816!10696-109G3;0.180793!10493-107B7;0.214451!10494-107B8;0.713921!10850-111F4;0.406946!10851-111F5;0.749357!10852-111F6;0.448794!10853-111F7;0.476807!10854-111F8;0.754119!10855-111F9;0.879918!10856-111G1;0.333777!10847-111F1;0.132908!10846-111E9;0.322791!10848-111F2;0.244132!10845-111E8;0.578106!10857-111G2;0.496372!10858-111G3;0.88538!10156-103A3;0.716553!11901-125F2;0.390229!11902-125F3;0.157955!11903-125F4;0.0821928!10689-109F5;0.0720444!10648-109A9;0.578127!10784-110H1;0.444719!10744-110C6;0.455796!10772-110F7;0.539772!10474-106I6;0.194757!10600-108E6;0.331156!10684-109E9;0.433705!12226-129F3;0.342958!12227-129F4;0.494121!10508-107D4;0.206639!10539-107G8;0.0782448!10607-108F4;0.0108331!10555-107I6;0.824883!10774-110F9;0.275032!10637-108I7;0.518148!10663-109C6;0.931195!10728-110A8;0.421104!10729-110A9;0.694197!10430-106D7;0.371907!10730-110B1;0.602677!10813-111B3;0.583385!10812-111B2;0.322629!10037-101F1;0.814397!10172-103C1;0.368932!10163-103B1;0.354025!10076-102A4;0.38525!10073-102A1;0.386804!10036-101E9;0.0912421!10195-103E6;0.40822!10277-104E7;0.398932!10434-106E2;0.35766!10550-107I1;0.122797!10545-107H5;0.367086!10544-107H4;0.250006!10704-109H2;0.536486!10510-107D6;0.977533!10558-107I9;0.0696702!10020-101D2;0.409693!10732-110B3;0.425608!10049-101G4;0.463499!10698-109G5;0.0456035!10437-106E5;0.475834!10417-106C3;0.577787!10035-101E8;0.323795!10171-103B9;0.367358!10157-103A4;0.418576!10034-101E7;0.428335!10072-101I9;0.367757!10199-103F1;0.0716909!10200-103F2;0.470639!10697-109G4;0.69214!10723-110A3;0.549649!10179-103C8;0.232771!10160-103A7;0.107957!10180-103C9;0.169991!10162-103A9;0.455923!10021-101D3;0.389203!10840-111E3;0.555325!10706-109H4;0.439894!10033-101E6;0.389379!10032-101E5;0.279618!10490-107B4;0.380685!10439-106E7;0.644096!10022-101D4;0.375003!10176-103C5;0.493281!10469-106I1;0.348755!10067-101I4;0.583396!10411-106B6;0.429376!10471-106I3;0.0177929!10030-101E3;0.25503!10475-106I7;0.26108!10787-110H4;0.928275!10477-106I9;0.997873!10695-109G2;0.162339!11771-123I7;0.119473!11772-123I8;0.725784!11773-123I9;0.478196!10093-102C3;0.33697!10442-106F1;0.66607!10442-106F1;0.183503!10201-103F3;0.161996!10639-108I9;0.804665!11843-124H7;0.680255!11841-124H5;0.33472!10693-109F9;0.40265!10436-106E4;0.055124!10483-107A6;0.302441!10282-104F3;0.123011!10023-101D5;0.849392!10066-101I3;0.816282!10065-101I2;0.604823!10800-110I8;0.521264!10610-108F7;0.41166!10841-111E4;0.770938!10541-107H1;0.764356!10842-111E5;0.622101!10562-108A4;0.966047!10024-101D6;0.551855!10064-101I1;0.991846!10609-108F6;0.602945!10048-101G3;0.970618!10781-110G7;0.63878!10181-103D1;0.773786!10159-103A6;0.350857!10056-101H2;0.304566!10737-110B8;0.242731!10025-101D7;0.614845!10044-101F8;0.855371!10424-106D1;0.608322!10463-106H4;0.228545!10616-108G4;0.374215!10486-107A9;0.159812!10062-101H8;0.181766!10202-103F4;0.591433!10158-103A5;0.735465!10441-106E9;0.371245!10031-101E4;0.715021!10063-101H9;0.384509!10063-101H9;0.0989388!11763-123H8;0.584164!11765-123I1;0.699539!11768-123I4;0.697337!10807-111A6;0.620383!10790-110H7;0.686616!10798-110I6;0.998418!10786-110H3;0.569529!10591-108D6;0.645191!10593-108D8;0.613915!10590-108D5;0.8951!10026-101D8;0.277521!10096-102C6;0.61448!10168-103B6;0.738985!10154-103A1;0.383179!10209-103G2;0.350184!10061-101H7;0.795403!10027-101D9;0.546712!10043-101F7;0.763034!10783-110G9;0.797286!10028-101E1;0.689472!10060-101H6;0.886259!10203-103F5;0.963336!10059-101H5;0.768438!10047-101G2;0.771404!10029-101E2;0.879808!10058-101H4;0.945722!10418-106C4;0.697262!10492-107B6;0.866998!10694-109G1;0.91858!10797-110I5;0.0573392!10057-101H3;0.527017!10100-102D1;0.415475!10055-101H1;0.563428!10204-103F6;0.340903!10191-103E2;0.58248!10563-108A5;0.781537
|name=motif_GCNGAT
|name=motif_GCNGAT
|tomtom_result=ARR10#MA0121.1;0;0.00806699;3.83989;1;6;GCAGAT;GCGGATCT;-!Mafb#MA0117.1;0;0.0104548;4.97646;1;6;GCAGAT;GCTGACGG;+!NFYA#MA0060.1;2;0.0120824;5.75123;1;6;GCAGAT;GCGCTGATTGGCTGAG;-!YPR013C#MA0434.1;1;0.0149783;7.12968;1;6;GCAGAT;TGTAGATCA;+!Gata1#MA0035.2;0;0.0164691;7.83927;1;6;GCAGAT;ACAGATAAGAA;+!YLL054C#MA0429.1;2;0.0173192;8.24396;1;5;GCAGAT;CGGCCGA;+
}}
}}

Latest revision as of 12:28, 7 September 2012

Full Name: motif_GCNGAT

Motif matrix
POACGT
010032640
020326400
03816816816816
040032640
053264000
060003264

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
ARR10#MA0121.100.008066993.8398916GCAGATGCGGATCT-
Mafb#MA0117.100.01045484.9764616GCAGATGCTGACGG+
NFYA#MA0060.120.01208245.7512316GCAGATGCGCTGATTGGCTGAG-
YPR013C#MA0434.110.01497837.1296816GCAGATTGTAGATCA+
Gata1#MA0035.200.01646917.8392716GCAGATACAGATAAGAA+
YLL054C#MA0429.120.01731928.2439615GCAGATCGGCCGA+
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