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MacroAPE 1083:Motif GTCATN: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!01;0;0;944;0!02;0;0;0;944!03;0;944;0;0!04;944;0;0;0!05;0;0;0;944!06;236;236;236;236 |macroape_1083_sample_pvalues=11376-118A8;0.688351!11327-...")
 
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28-111C9;0.457554!10788-110H5;0.183729!10792-110H9;0.351374!10765-110E9;0.267245!10829-111D1;0.0802049!10830-111D2;0.586376!10831-111D3;0.114804!10832-111D4;0.123765!10833-111D5;0.696105!10764-110E8;0.431667!10770-110F5;0.14491!10399-106A3;0.5315!10400-106A4;0.354584!10405-106A9;0.333069!10834-111D6;0.390208!10835-111D7;0.733269!10836-111D8;0.950912!10837-111D9;0.903709!10699-109G6;0.857803!10802-111A1;0.399897!10796-110I4;0.576151!10010-101C1;0.326653!10810-111A9;0.449168!10421-106C7;0.441412!10708-109H6;0.601726!12235-129G3;0.929905!12236-129G4;0.693042!12237-129G5;0.155232!10167-103B5;0.506939!10151-102I7;0.609793!10428-106D5;0.988506!10795-110I3;0.141465!10805-111A4;0.927685!10052-101G7;0.122247!10189-103D9;0.876413!10589-108D4;0.418096!10425-106D2;0.536062!10427-106D4;0.153713!10702-109G9;0.212098!10432-106D9;0.451726!10496-107C1;0.668223!10718-109I7;0.679575!10011-101C2;0.193504!10053-101G8;0.625229!10686-109F2;0.766555!10084-102B3;0.632007!10012-101C3;0.966484!10085-102B4;0.760468!10482-107A5;0.693419!10419-106C5;0.995053!10080-102A8;0.427132!10760-110E4;0.773242!10709-109H7;0.361464!10710-109H8;0.281212!10703-109H1;0.765047!10719-109I8;0.975111!10642-109A3;0.469611!10177-103C6;0.681474!10164-103B2;0.582883!10173-103C2;0.96448!10166-103B4;0.934351!10083-102B2;0.827766!10188-103D8;0.982591!10552-107I3;0.596717!10553-107I4;0.456374!10013-101C4;0.986473!10536-107G5;0.79847!10618-108G6;0.304!10423-106C9;0.754143!10785-110H2;0.780342!12238-129G6;0.684987!12239-129G7;0.166247!12240-129G8;0.549386!10416-106C2;0.888643!10801-110I9;0.521142!10766-110F1;0.326368!10824-111C5;0.505736!10825-111C6;0.900016!10826-111C7;0.82894!10454-106G4;0.767932!10409-106B4;0.470695!10638-108I8;0.411304!10636-108I6;0.859718!10513-107D9;0.665886!10420-106C6;0.405542!10082-102B1;0.479504!10014-101C5;0.103207!10070-101I7;0.350842!10452-106G2;0.415854!10453-106G3;0.623525!10449-106F8;0.635753!10042-101F6;0.477732!10069-101I6;0.802433!10193-103E4;0.956029!10631-108I1;0.650896!10438-106E6;0.170357!10488-107B2;0.961381!10196-103E7;0.878339!10071-101I8;0.53774!10071-101I8;0.204659!10041-101F5;0.604231!10451-106G1;0.512941!10450-106F9;0.170557!10604-108F1;0.587445!10605-108F2;0.6909!10606-108F3;0.867371!10603-108E9;0.781102!10497-107C2;0.880987!10448-106F7;0.197347!10643-109A4;0.412999!10426-106D3;0.960494!10431-106D8;0.40236!10197-103E8;0.855731!10443-106F2;0.716923!10815-111B5;0.974022!10816-111B6;0.783403!10817-111B7;0.726239!10015-101C6;0.820822!10410-106B5;0.654865!10054-101G9;0.742176!10758-110E2;0.875408!10711-109H9;0.849239!10040-101F4;0.559845!10470-106I2;0.768375!10415-106C1;0.412794!10198-103E9;0.892458!10614-108G2;0.769668!10612-108F9;0.983416!10549-107H9;0.0234022!10615-108G3;0.883916!10487-107B1;0.413673!10433-106E1;0.410368!10688-109F4;0.719879!10444-106F3;0.868542!10444-106F3;0.876861!10485-107A8;0.937338!10413-106B8;0.0927015!10175-103C4;0.204882!10161-103A8;0.520336!12131-128D7;0.978964!10624-108H3;0.59453!10712-109I1;0.141824!10205-103F7;0.15673!10206-103F8;0.259432!10207-103F9;0.362352!10050-101G5;0.19146!10051-101G6;0.0461996!10016-101C7;0.0937652!10046-101G1;0.116341!10778-110G4;0.526792!10633-108I3;0.768222!10818-111B8;0.372338!10819-111B9;0.0189029!10820-111C1;0.0319372!10484-107A7;0.0156063!10808-111A7;0.64647!10169-103B7;0.0866972!10153-102I9;0.708386!13425-144D5;0.996005!13433-144E4;0.298546!13437-144E8;0.362183!11904-125F5;0.305011!11905-125F6;0.245401!10039-101F3;0.234479!10791-110H8;0.800609!10017-101C8;0.75549!10045-101F9;0.839325!10509-107D5;0.326098!10839-111E2;0.830717!10692-109F8;0.00992335!10079-102A7;0.747729!10078-102A6;0.306514!10721-110A1;0.154855!10569-108B2;0.554289!10570-108B3;0.32068!10571-108B4;0.348062!10647-109A8;0.549702!10752-110D5;0.707819!10782-110G8;0.496603!10726-110A6;0.130527!10018-101C9;0.56788!10086-102B5;0.659957!10182-103D2;0.557189!10165-103B3;0.601007!10499-107C4;0.703432!10408-106B3;0.707655!10019-101D1;0.0808055!10068-101I5;0.817837!10075-102A3;0.835267!10077-102A5;0.44755!10727-110A7;0.0844684!10775-110G1;0.257168!10412-106B7;0.278214!12231-129F8;0.954467!12232-129F9;0.0330192!12233-129G1;0.0301465!12234-129G2;0.0415281!10414-106B9;0.0700331!10170-103B8;0.449211!10183-103D3;0.592457!10150-102I6;0.642444!10174-103C3;0.907793!10155-103A2;0.591611!10038-101F2;0.847149!10838-111E1;0.687944!10759-110E3;0.456259!10514-107E1;0.333947!10465-106H6;0.50005!10691-109F7;0.473278!10843-111E6;0.378226!10844-111E7;0.242182!11747-123G1;0.856158!11748-123G2;0.900882!11749-123G3;0.780689!11750-123G4;0.266227!11751-123G5;0.0585865!11840-124H4;0.290439!11752-123G6;0.201862!11753-123G7;0.0485623!11754-123G8;0.126124!11755-123G9;0.391216!11756-123H1;0.0956626!11833-124G6;0.229528!11760-123H5;0.0357201!11836-124G9;0.928932!11758-123H3;0.468416!11835-124G8;0.422954!11762-123H7;0.24582!11838-124H2;0.991376!11757-123H2;0.640683!11759-123H4;0.32151!11761-123H6;0.136072!11842-124H6;0.825415!11837-124H1;0.0696123!10568-108B1;0.184426!13230-141I8;0.570314!13231-141I9;0.441173!10696-109G3;0.490836!10493-107B7;0.868615!10494-107B8;0.774149!10850-111F4;0.208875!10851-111F5;0.951136!10852-111F6;0.566345!10853-111F7;0.723707!10854-111F8;0.519861!10855-111F9;0.496756!10856-111G1;0.175335!10847-111F1;0.317781!10846-111E9;0.672487!10848-111F2;0.498034!10845-111E8;0.930269!10857-111G2;0.579881!10858-111G3;0.821317!10156-103A3;0.858768!11901-125F2;0.893318!11902-125F3;0.979524!11903-125F4;0.870828!10689-109F5;0.962439!10648-109A9;0.666618!10784-110H1;0.565901!10744-110C6;0.738644!10772-110F7;0.182609!10474-106I6;0.348099!10600-108E6;0.150711!10684-109E9;0.724627!12226-129F3;0.168026!12227-129F4;0.731558!10508-107D4;0.104732!10539-107G8;0.880482!10607-108F4;0.378055!10555-107I6;0.203333!10774-110F9;0.983891!10637-108I7;0.265448!10663-109C6;0.273222!10728-110A8;0.447393!10729-110A9;0.114853!10430-106D7;0.77759!10730-110B1;0.138969!10813-111B3;0.24728!10812-111B2;0.921795!10037-101F1;0.773623!10172-103C1;0.796102!10163-103B1;0.628425!10076-102A4;0.998851!10073-102A1;0.67583!10036-101E9;0.654257!10195-103E6;0.823479!10277-104E7;0.879869!10434-106E2;0.381129!10550-107I1;0.269735!10545-107H5;0.465269!10544-107H4;0.870148!10704-109H2;0.219203!10510-107D6;0.916865!10558-107I9;0.475334!10020-101D2;0.175111!10732-110B3;0.886849!10049-101G4;0.735157!10698-109G5;0.450107!10437-106E5;0.743042!10417-106C3;0.20735!10035-101E8;0.734304!10171-103B9;0.751716!10157-103A4;0.663089!10034-101E7;0.861199!10072-101I9;0.766243!10199-103F1;0.651742!10200-103F2;0.215954!10697-109G4;0.648478!10723-110A3;0.775165!10179-103C8;0.0861315!10160-103A7;0.552479!10180-103C9;0.960218!10162-103A9;0.356686!10021-101D3;0.810101!10840-111E3;0.682777!10706-109H4;0.232474!10033-101E6;0.0107551!10032-101E5;0.766214!10490-107B4;0.756833!10439-106E7;0.913362!10022-101D4;0.922947!10176-103C5;0.952329!10469-106I1;0.766311!10067-101I4;0.966816!10411-106B6;0.255289!10471-106I3;0.0205774!10030-101E3;0.501429!10475-106I7;0.983815!10787-110H4;0.339955!10477-106I9;0.241547!10695-109G2;0.10773!11771-123I7;0.444543!11772-123I8;0.811199!11773-123I9;0.557399!10093-102C3;0.25112!10442-106F1;0.49361!10442-106F1;0.128628!10201-103F3;0.126063!10639-108I9;0.283921!11843-124H7;0.992785!11841-124H5;0.834933!10693-109F9;0.729425!10436-106E4;0.832905!10483-107A6;0.747687!10282-104F3;0.261759!10023-101D5;0.277634!10066-101I3;0.249934!10065-101I2;0.38941!10800-110I8;0.803942!10610-108F7;0.794423!10841-111E4;0.942178!10541-107H1;0.861608!10842-111E5;0.719675!10562-108A4;0.604592!10024-101D6;0.749366!10064-101I1;0.358429!10609-108F6;0.130505!10048-101G3;0.281977!10781-110G7;0.7689!10181-103D1;0.559476!10159-103A6;0.66756!10056-101H2;0.929411!10737-110B8;0.952683!10025-101D7;0.822377!10044-101F8;0.327201!10424-106D1;0.270926!10463-106H4;0.237584!10616-108G4;0.962217!10486-107A9;0.769295!10062-101H8;0.845649!10202-103F4;0.171579!10158-103A5;0.77816!10441-106E9;0.902601!10031-101E4;0.499318!10063-101H9;0.819588!10063-101H9;0.554896!11763-123H8;0.417733!11765-123I1;0.730426!11768-123I4;0.653983!10807-111A6;0.85777!10790-110H7;0.456367!10798-110I6;0.233993!10786-110H3;0.141156!10591-108D6;0.648428!10593-108D8;0.373979!10590-108D5;0.20216!10026-101D8;0.204623!10096-102C6;0.947207!10168-103B6;0.991649!10154-103A1;0.426027!10209-103G2;0.880769!10061-101H7;0.647217!10027-101D9;0.502048!10043-101F7;0.153457!10783-110G9;0.192068!10028-101E1;0.0893403!10060-101H6;0.982686!10203-103F5;0.936049!10059-101H5;0.371092!10047-101G2;0.917827!10029-101E2;0.125871!10058-101H4;0.983758!10418-106C4;0.729429!10492-107B6;0.416846!10694-109G1;0.687415!10797-110I5;0.83264!10057-101H3;0.462917!10100-102D1;0.928919!10055-101H1;0.976894!10204-103F6;0.281418!10191-103E2;0.919368!10563-108A5;0.703329
|name=motif_GTCATN
|name=motif_GTCATN
|tomtom_result=NFE2L1::MafG#MA0089.1;0;7.88952e-06;0.00375541;0.00750892;6;GTCATA;GTCATG;-!RXRA::VDR#MA0074.1;2;0.0026027;1.23889;0.665778;6;GTCATA;GGGTCAACGAGTTCA;+!bZIP910#MA0096.1;2;0.00318419;1.51567;0.665778;5;GTCATA;ACGTCAT;-!PPARG::RXRA#MA0065.1;13;0.00336124;1.59995;0.665778;6;GTCATA;CTAGGGGTCAAAGGTCATCG;+!CST6#MA0286.1;4;0.00349762;1.66487;0.665778;5;GTCATA;TTACGTCAT;-!GCN4#MA0303.1;10;0.00609714;2.90224;0.705149;6;GTCATA;CAAGGGATGAGTCATACTTCA;+!Pax2#MA0067.1;1;0.0063918;3.0425;0.705149;6;GTCATA;AGTCACGG;+!TOS8#MA0408.1;2;0.0063918;3.0425;0.705149;6;GTCATA;CTGTCAAA;+!NFE2L2#MA0150.1;6;0.00666801;3.17397;0.705149;5;GTCATA;TGCTGAGTCAT;-!ARG81#MA0272.1;3;0.00809417;3.85283;0.77037;5;GTCATA;AGAGTCAC;-!bZIP911#MA0097.1;6;0.00997173;4.74654;0.853307;6;GTCATA;GGCCACGTCATC;-!CREB1#MA0018.1;3;0.0108446;5.16203;0.853307;6;GTCATA;GACGTCACCAGG;-!ZAP1#MA0440.1;9;0.0116553;5.5479;0.853307;6;GTCATA;ACCTTAAAGGTCATG;+!ESR2#MA0258.1;4;0.0155791;7.41563;0.989035;6;GTCATA;CAAGGTCACGGTGACCTG;+!RXR::RAR_DR5#MA0159.1;2;0.0157445;7.4944;0.989035;6;GTCATA;AGGTCATGGAGAGGTCA;+!YY1#MA0095.1;0;0.0201636;9.59789;0.999747;6;GTCATA;GCCATC;+
}}
}}

Latest revision as of 12:24, 7 September 2012

Full Name: motif_GTCATN

Motif matrix
POACGT
01009440
02000944
03094400
04944000
05000944
06236236236236

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
NFE2L1::MafG#MA0089.107.88952e-060.003755410.007508926GTCATAGTCATG-
RXRA::VDR#MA0074.120.00260271.238890.6657786GTCATAGGGTCAACGAGTTCA+
bZIP910#MA0096.120.003184191.515670.6657785GTCATAACGTCAT-
PPARG::RXRA#MA0065.1130.003361241.599950.6657786GTCATACTAGGGGTCAAAGGTCATCG+
CST6#MA0286.140.003497621.664870.6657785GTCATATTACGTCAT-
GCN4#MA0303.1100.006097142.902240.7051496GTCATACAAGGGATGAGTCATACTTCA+
Pax2#MA0067.110.00639183.04250.7051496GTCATAAGTCACGG+
TOS8#MA0408.120.00639183.04250.7051496GTCATACTGTCAAA+
NFE2L2#MA0150.160.006668013.173970.7051495GTCATATGCTGAGTCAT-
ARG81#MA0272.130.008094173.852830.770375GTCATAAGAGTCAC-
bZIP911#MA0097.160.009971734.746540.8533076GTCATAGGCCACGTCATC-
CREB1#MA0018.130.01084465.162030.8533076GTCATAGACGTCACCAGG-
ZAP1#MA0440.190.01165535.54790.8533076GTCATAACCTTAAAGGTCATG+
ESR2#MA0258.140.01557917.415630.9890356GTCATACAAGGTCACGGTGACCTG+
RXR::RAR_DR5#MA0159.120.01574457.49440.9890356GTCATAAGGTCATGGAGAGGTCA+
YY1#MA0095.100.02016369.597890.9997476GTCATAGCCATC+
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