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MacroAPE 1083:Motif GTCANC: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!01;0;0;5136;0!02;0;0;0;5136!03;0;5136;0;0!04;5136;0;0;0!05;1284;1284;1284;1284!06;0;5136;0;0 |macroape_1083_sample_pvalues=11376-118A8;0.3788...")
 
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D6;0.305375!10464-106H5;0.597978!10827-111C8;0.394127!10789-110H6;0.260313!10828-111C9;0.201386!10788-110H5;0.146138!10792-110H9;0.189721!10765-110E9;0.140705!10829-111D1;0.187612!10830-111D2;0.294006!10831-111D3;0.226436!10832-111D4;0.0864779!10833-111D5;0.270425!10764-110E8;0.178023!10770-110F5;0.268322!10399-106A3;0.154798!10400-106A4;0.111888!10405-106A9;0.1148!10834-111D6;0.176578!10835-111D7;0.0807516!10836-111D8;0.902845!10837-111D9;0.548888!10699-109G6;0.127982!10802-111A1;0.222189!10796-110I4;0.458303!10010-101C1;0.993579!10810-111A9;0.851891!10421-106C7;0.21604!10708-109H6;0.692343!12235-129G3;0.442961!12236-129G4;0.125461!12237-129G5;0.792534!10167-103B5;0.208442!10151-102I7;0.549981!10428-106D5;0.779228!10795-110I3;0.639867!10805-111A4;0.987664!10052-101G7;0.325975!10189-103D9;0.946085!10589-108D4;0.521932!10425-106D2;0.903761!10427-106D4;0.721683!10702-109G9;0.792768!10432-106D9;0.660728!10496-107C1;0.624995!10718-109I7;0.853286!10011-101C2;0.300452!10053-101G8;0.961464!10686-109F2;0.0909445!10084-102B3;0.571011!10012-101C3;0.588609!10085-102B4;0.609208!10482-107A5;0.9165!10419-106C5;0.798393!10080-102A8;0.872204!10760-110E4;0.978846!10709-109H7;0.514422!10710-109H8;0.579398!10703-109H1;0.899929!10719-109I8;0.841453!10642-109A3;0.3951!10177-103C6;0.351881!10164-103B2;0.640627!10173-103C2;0.771551!10166-103B4;0.646891!10083-102B2;0.748597!10188-103D8;0.729664!10552-107I3;0.57924!10553-107I4;0.881541!10013-101C4;0.314052!10536-107G5;0.596782!10618-108G6;0.245979!10423-106C9;0.715545!10785-110H2;0.837063!12238-129G6;0.92833!12239-129G7;0.153461!12240-129G8;0.691646!10416-106C2;0.302987!10801-110I9;0.316665!10766-110F1;0.247909!10824-111C5;0.384881!10825-111C6;0.943872!10826-111C7;0.924796!10454-106G4;0.970473!10409-106B4;0.667791!10638-108I8;0.334979!10636-108I6;0.403932!10513-107D9;0.794533!10420-106C6;0.663882!10082-102B1;0.388798!10014-101C5;0.348613!10070-101I7;0.905666!10452-106G2;0.812247!10453-106G3;0.0416869!10449-106F8;0.498065!10042-101F6;0.72775!10069-101I6;0.59861!10193-103E4;0.912811!10631-108I1;0.617553!10438-106E6;0.312038!10488-107B2;0.8724!10196-103E7;0.725425!10071-101I8;0.591549!10071-101I8;0.783691!10041-101F5;0.771811!10451-106G1;0.582014!10450-106F9;0.427063!10604-108F1;0.548754!10605-108F2;0.3095!10606-108F3;0.605937!10603-108E9;0.446469!10497-107C2;0.271498!10448-106F7;0.462526!10643-109A4;0.644265!10426-106D3;0.779006!10431-106D8;0.950722!10197-103E8;0.806243!10443-106F2;0.865617!10815-111B5;0.325706!10816-111B6;0.471357!10817-111B7;0.692861!10015-101C6;0.490488!10410-106B5;0.955011!10054-101G9;0.749387!10758-110E2;0.955629!10711-109H9;0.55653!10040-101F4;0.468454!10470-106I2;0.625173!10415-106C1;0.922293!10198-103E9;0.612859!10614-108G2;0.926307!10612-108F9;0.879291!10549-107H9;0.655723!10615-108G3;0.606192!10487-107B1;0.674054!10433-106E1;0.322087!10688-109F4;0.900743!10444-106F3;0.701782!10444-106F3;0.230962!10485-107A8;0.258141!10413-106B8;0.25156!10175-103C4;0.268412!10161-103A8;0.570872!12131-128D7;0.670083!10624-108H3;0.703241!10712-109I1;0.66411!10205-103F7;0.755449!10206-103F8;0.566393!10207-103F9;0.650829!10050-101G5;0.438913!10051-101G6;0.701613!10016-101C7;0.522143!10046-101G1;0.451342!10778-110G4;0.624603!10633-108I3;0.738996!10818-111B8;0.693826!10819-111B9;0.153672!10820-111C1;0.149567!10484-107A7;0.160406!10808-111A7;0.843244!10169-103B7;0.247954!10153-102I9;0.648081!13425-144D5;0.833209!13433-144E4;0.221452!13437-144E8;0.162686!11904-125F5;0.170446!11905-125F6;0.00423047!10039-101F3;0.00187293!10791-110H8;0.658729!10017-101C8;0.694033!10045-101F9;0.821802!10509-107D5;0.848386!10839-111E2;0.513493!10692-109F8;0.578084!10079-102A7;0.781283!10078-102A6;0.712944!10721-110A1;0.488094!10569-108B2;0.578161!10570-108B3;0.920412!10571-108B4;0.780265!10647-109A8;0.900029!10752-110D5;0.335048!10782-110G8;0.672554!10726-110A6;0.98025!10018-101C9;0.566498!10086-102B5;0.57144!10182-103D2;0.645262!10165-103B3;0.451735!10499-107C4;0.496052!10408-106B3;0.695813!10019-101D1;0.661226!10068-101I5;0.904176!10075-102A3;0.95708!10077-102A5;0.916972!10727-110A7;0.107613!10775-110G1;0.691314!10412-106B7;0.321458!12231-129F8;0.995899!12232-129F9;0.110334!12233-129G1;0.20109!12234-129G2;0.204087!10414-106B9;0.132871!10170-103B8;0.956889!10183-103D3;0.551497!10150-102I6;0.544416!10174-103C3;0.659608!10155-103A2;0.624784!10038-101F2;0.675426!10838-111E1;0.626757!10759-110E3;0.25506!10514-107E1;0.227071!10465-106H6;0.774222!10691-109F7;0.730668!10843-111E6;0.8536!10844-111E7;0.723979!11747-123G1;0.874114!11748-123G2;0.407904!11749-123G3;0.728558!11750-123G4;0.608888!11751-123G5;0.542115!11840-124H4;0.809104!11752-123G6;0.906563!11753-123G7;0.572573!11754-123G8;0.712095!11755-123G9;0.676501!11756-123H1;0.724459!11833-124G6;0.571828!11760-123H5;0.693358!11836-124G9;0.545825!11758-123H3;0.759073!11835-124G8;0.759097!11762-123H7;0.583736!11838-124H2;0.902543!11757-123H2;0.95247!11759-123H4;0.433952!11761-123H6;0.875058!11842-124H6;0.854121!11837-124H1;0.947115!10568-108B1;0.656599!13230-141I8;0.181814!13231-141I9;0.517771!10696-109G3;0.487267!10493-107B7;0.654821!10494-107B8;0.817534!10850-111F4;0.279128!10851-111F5;0.483363!10852-111F6;0.0331747!10853-111F7;0.117164!10854-111F8;0.572166!10855-111F9;0.114952!10856-111G1;0.00409636!10847-111F1;0.0458196!10846-111E9;0.250568!10848-111F2;0.114187!10845-111E8;0.164383!10857-111G2;0.16211!10858-111G3;0.0807386!10156-103A3;0.640793!11901-125F2;0.674442!11902-125F3;0.738484!11903-125F4;0.768306!10689-109F5;0.867057!10648-109A9;0.484215!10784-110H1;0.696316!10744-110C6;0.836263!10772-110F7;0.512584!10474-106I6;0.127745!10600-108E6;0.566114!10684-109E9;0.594006!12226-129F3;0.952205!12227-129F4;0.43981!10508-107D4;0.715182!10539-107G8;0.690409!10607-108F4;0.867459!10555-107I6;0.208534!10774-110F9;0.59793!10637-108I7;0.182911!10663-109C6;0.631671!10728-110A8;0.29554!10729-110A9;0.328897!10430-106D7;0.322836!10730-110B1;0.471708!10813-111B3;0.62903!10812-111B2;0.852457!10037-101F1;0.414516!10172-103C1;0.672852!10163-103B1;0.505062!10076-102A4;0.672135!10073-102A1;0.535656!10036-101E9;0.931636!10195-103E6;0.591958!10277-104E7;0.705315!10434-106E2;0.33201!10550-107I1;0.944334!10545-107H5;0.786331!10544-107H4;0.744114!10704-109H2;0.956237!10510-107D6;0.838483!10558-107I9;0.961967!10020-101D2;0.182368!10732-110B3;0.590849!10049-101G4;0.516149!10698-109G5;0.772414!10437-106E5;0.987342!10417-106C3;0.696655!10035-101E8;0.510878!10171-103B9;0.567395!10157-103A4;0.454881!10034-101E7;0.64174!10072-101I9;0.545551!10199-103F1;0.831785!10200-103F2;0.905126!10697-109G4;0.946172!10723-110A3;0.719704!10179-103C8;0.908716!10160-103A7;0.469844!10180-103C9;0.680998!10162-103A9;0.317489!10021-101D3;0.459366!10840-111E3;0.703709!10706-109H4;0.779204!10033-101E6;0.475293!10032-101E5;0.567321!10490-107B4;0.582591!10439-106E7;0.502864!10022-101D4;0.342395!10176-103C5;0.709127!10469-106I1;0.649454!10067-101I4;0.549143!10411-106B6;0.258202!10471-106I3;0.0449403!10030-101E3;0.993717!10475-106I7;0.970195!10787-110H4;0.593055!10477-106I9;0.490034!10695-109G2;0.0287402!11771-123I7;0.705159!11772-123I8;0.816123!11773-123I9;0.559559!10093-102C3;0.329431!10442-106F1;0.794406!10442-106F1;0.741509!10201-103F3;0.673286!10639-108I9;0.975516!11843-124H7;0.5187!11841-124H5;0.930084!10693-109F9;0.0893861!10436-106E4;0.900771!10483-107A6;0.985485!10282-104F3;0.785033!10023-101D5;0.555929!10066-101I3;0.50325!10065-101I2;0.615077!10800-110I8;0.920949!10610-108F7;0.737158!10841-111E4;0.52787!10541-107H1;0.564353!10842-111E5;0.765883!10562-108A4;0.654441!10024-101D6;0.902257!10064-101I1;0.8287!10609-108F6;0.611848!10048-101G3;0.559981!10781-110G7;0.789953!10181-103D1;0.208538!10159-103A6;0.575807!10056-101H2;0.580238!10737-110B8;0.966864!10025-101D7;0.515924!10044-101F8;0.222004!10424-106D1;0.613123!10463-106H4;0.397918!10616-108G4;0.721487!10486-107A9;0.390907!10062-101H8;0.656225!10202-103F4;0.980051!10158-103A5;0.995561!10441-106E9;0.510768!10031-101E4;0.0966271!10063-101H9;0.63097!10063-101H9;0.856501!11763-123H8;0.810991!11765-123I1;0.433683!11768-123I4;0.588405!10807-111A6;0.387894!10790-110H7;0.201592!10798-110I6;0.150543!10786-110H3;0.154541!10591-108D6;0.640692!10593-108D8;0.31024!10590-108D5;0.684423!10026-101D8;0.297272!10096-102C6;0.235881!10168-103B6;0.259631!10154-103A1;0.488427!10209-103G2;0.6536!10061-101H7;0.921985!10027-101D9;0.678792!10043-101F7;0.164191!10783-110G9;0.575753!10028-101E1;0.037784!10060-101H6;0.916821!10203-103F5;0.742527!10059-101H5;0.723105!10047-101G2;0.857552!10029-101E2;0.85663!10058-101H4;0.874517!10418-106C4;0.897583!10492-107B6;0.857078!10694-109G1;0.408097!10797-110I5;0.794816!10057-101H3;0.785413!10100-102D1;0.97033!10055-101H1;0.453083!10204-103F6;0.236886!10191-103E2;0.90265!10563-108A5;0.812268
|name=motif_GTCANC
|name=motif_GTCANC
|tomtom_result=CREB1#MA0018.1;3;0.000230182;0.109567;0.218092;6;GTCAAC;GACGTCACCAGG;-!bZIP911#MA0097.1;6;0.000588033;0.279904;0.278573;6;GTCAAC;GGCCACGTCATC;-!Mafb#MA0117.1;2;0.00159464;0.759051;0.325653;6;GTCAAC;GCGTCAGC;-!ESR1#MA0112.2;7;0.00159752;0.76042;0.325653;6;GTCAAC;GGCCCAGGTCACCCTGACCT;+!NFE2L1::MafG#MA0089.1;0;0.00171853;0.818022;0.325653;6;GTCAAC;GTCATG;-!RXRA::VDR#MA0074.1;2;0.00237901;1.13241;0.352708;6;GTCAAC;GGGTCAACGAGTTCA;+!PPARG::RXRA#MA0065.1;13;0.00260583;1.24037;0.352708;6;GTCAAC;CTAGGGGTCAAAGGTCATCG;+!NR1H2::RXRA#MA0115.1;11;0.00344193;1.63836;0.407643;6;GTCAAC;AAAGGTCAAAGGTCAAC;+!ESR2#MA0258.1;3;0.0052231;2.4862;0.549862;6;GTCAAC;CAGGTCACCGTGACCTTG;-!ESR1#MA0112.2;4;0.00654067;3.11336;0.58755;6;GTCAAC;CCAGGTCACCGTGACCCC;+!RXR::RAR_DR5#MA0159.1;2;0.00739747;3.5212;0.58755;6;GTCAAC;AGGTCATGGAGAGGTCA;+!TOS8#MA0408.1;2;0.00831807;3.9594;0.58755;6;GTCAAC;CTGTCAAA;+!bZIP910#MA0096.1;2;0.00842772;4.0116;0.58755;5;GTCAAC;ACGTCAT;-!ARG81#MA0272.1;3;0.0086817;4.13249;0.58755;5;GTCAAC;AGAGTCAC;-!PPARG#MA0066.1;5;0.0106378;5.06359;0.651338;6;GTCAAC;AGTAGGTCACCGTGACCTAC;-!usp#MA0016.1;3;0.0112369;5.34875;0.651338;6;GTCAAC;GGGGTCACGG;+!tll#MA0459.1;4;0.0121539;5.78527;0.651338;6;GTCAAC;AAAAGTCAAA;+!CST6#MA0286.1;4;0.0130615;6.21726;0.651338;5;GTCAAC;TTACGTCAT;-!YAP7#MA0419.1;4;0.019358;9.21443;0.871398;6;GTCAAC;ATTAGTAAGCA;+!NR4A2#MA0160.1;3;0.0202335;9.63116;0.871398;5;GTCAAC;AAGGTCAC;+
}}
}}

Latest revision as of 12:22, 7 September 2012

Full Name: motif_GTCANC

Motif matrix
POACGT
010051360
020005136
030513600
045136000
051284128412841284
060513600

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
CREB1#MA0018.130.0002301820.1095670.2180926GTCAACGACGTCACCAGG-
bZIP911#MA0097.160.0005880330.2799040.2785736GTCAACGGCCACGTCATC-
Mafb#MA0117.120.001594640.7590510.3256536GTCAACGCGTCAGC-
ESR1#MA0112.270.001597520.760420.3256536GTCAACGGCCCAGGTCACCCTGACCT+
NFE2L1::MafG#MA0089.100.001718530.8180220.3256536GTCAACGTCATG-
RXRA::VDR#MA0074.120.002379011.132410.3527086GTCAACGGGTCAACGAGTTCA+
PPARG::RXRA#MA0065.1130.002605831.240370.3527086GTCAACCTAGGGGTCAAAGGTCATCG+
NR1H2::RXRA#MA0115.1110.003441931.638360.4076436GTCAACAAAGGTCAAAGGTCAAC+
ESR2#MA0258.130.00522312.48620.5498626GTCAACCAGGTCACCGTGACCTTG-
ESR1#MA0112.240.006540673.113360.587556GTCAACCCAGGTCACCGTGACCCC+
RXR::RAR_DR5#MA0159.120.007397473.52120.587556GTCAACAGGTCATGGAGAGGTCA+
TOS8#MA0408.120.008318073.95940.587556GTCAACCTGTCAAA+
bZIP910#MA0096.120.008427724.01160.587555GTCAACACGTCAT-
ARG81#MA0272.130.00868174.132490.587555GTCAACAGAGTCAC-
PPARG#MA0066.150.01063785.063590.6513386GTCAACAGTAGGTCACCGTGACCTAC-
usp#MA0016.130.01123695.348750.6513386GTCAACGGGGTCACGG+
tll#MA0459.140.01215395.785270.6513386GTCAACAAAAGTCAAA+
CST6#MA0286.140.01306156.217260.6513385GTCAACTTACGTCAT-
YAP7#MA0419.140.0193589.214430.8713986GTCAACATTAGTAAGCA+
NR4A2#MA0160.130.02023359.631160.8713985GTCAACAAGGTCAC+
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