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MacroAPE 1083:1-CAATGACATC: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;139.221;1071.852;145.209;140.718!2;1083.828;115.269;167.664;130.239!3;1071.852;118.263;137.724;169.161!4;169.161;169.161;142.215;1016.463!5;...")
 
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5!10827-111C8;0.0363593!10789-110H6;0.0972147!10828-111C9;0.0289228!10788-110H5;0.114442!10792-110H9;0.053232!10765-110E9;0.0199223!10829-111D1;0.098764!10830-111D2;0.34606!10831-111D3;0.00154441!10832-111D4;0.0885407!10833-111D5;0.264552!10764-110E8;0.109528!10770-110F5;0.0742182!10399-106A3;0.250034!10400-106A4;0.16498!10405-106A9;0.127407!10834-111D6;0.190247!10835-111D7;0.121207!10836-111D8;0.531901!10837-111D9;0.0243961!10699-109G6;0.147466!10802-111A1;0.068678!10796-110I4;0.0517503!10010-101C1;0.0247661!10810-111A9;0.487603!10421-106C7;0.410816!10708-109H6;0.19528!12235-129G3;0.329617!12236-129G4;0.658662!12237-129G5;0.75038!10167-103B5;0.744389!10151-102I7;0.0211585!10428-106D5;0.100177!10795-110I3;0.38624!10805-111A4;0.528377!10052-101G7;0.181188!10189-103D9;0.597074!10589-108D4;0.250508!10425-106D2;0.678437!10427-106D4;0.101631!10702-109G9;0.0575669!10432-106D9;0.0788388!10496-107C1;0.113994!10718-109I7;0.203011!10011-101C2;0.269354!10053-101G8;0.726596!10686-109F2;0.0609741!10084-102B3;0.877096!10012-101C3;0.0347414!10085-102B4;0.0457493!10482-107A5;0.00348816!10419-106C5;0.412477!10080-102A8;0.203056!10760-110E4;0.304831!10709-109H7;0.202297!10710-109H8;0.196451!10703-109H1;0.26659!10719-109I8;0.0309434!10642-109A3;0.761233!10177-103C6;0.265021!10164-103B2;0.0971344!10173-103C2;0.187599!10166-103B4;0.0753103!10083-102B2;0.20085!10188-103D8;0.083712!10552-107I3;0.00547434!10553-107I4;0.481915!10013-101C4;0.589757!10536-107G5;0.457461!10618-108G6;0.131482!10423-106C9;0.0011767!10785-110H2;0.00391329!12238-129G6;0.00797229!12239-129G7;0.65543!12240-129G8;0.265179!10416-106C2;0.388199!10801-110I9;0.0883433!10766-110F1;0.13757!10824-111C5;0.0126153!10825-111C6;0.0519928!10826-111C7;0.0639129!10454-106G4;0.0506585!10409-106B4;0.180818!10638-108I8;0.0436635!10636-108I6;0.325089!10513-107D9;0.111065!10420-106C6;0.0637931!10082-102B1;0.441045!10014-101C5;0.107122!10070-101I7;0.18832!10452-106G2;0.193673!10453-106G3;0.453339!10449-106F8;0.268496!10042-101F6;0.166037!10069-101I6;0.10747!10193-103E4;0.0945873!10631-108I1;0.0449883!10438-106E6;0.22052!10488-107B2;0.440753!10196-103E7;0.209827!10071-101I8;0.527629!10071-101I8;0.657444!10041-101F5;0.0417751!10451-106G1;0.864887!10450-106F9;0.94765!10604-108F1;0.465347!10605-108F2;0.0974854!10606-108F3;0.574977!10603-108E9;0.208112!10497-107C2;0.174118!10448-106F7;0.0523696!10643-109A4;0.683151!10426-106D3;0.323016!10431-106D8;0.0164292!10197-103E8;0.363704!10443-106F2;0.64921!10815-111B5;0.336293!10816-111B6;0.0807856!10817-111B7;0.105596!10015-101C6;0.0897127!10410-106B5;0.95399!10054-101G9;0.0644814!10758-110E2;0.198311!10711-109H9;0.943225!10040-101F4;0.812266!10470-106I2;0.0261054!10415-106C1;0.053267!10198-103E9;0.361832!10614-108G2;0.908768!10612-108F9;0.384391!10549-107H9;0.0397212!10615-108G3;0.0761119!10487-107B1;0.60208!10433-106E1;0.490746!10688-109F4;0.204427!10444-106F3;0.102888!10444-106F3;0.571996!10485-107A8;0.779749!10413-106B8;0.687627!10175-103C4;0.068775!10161-103A8;0.0504761!12131-128D7;0.143817!10624-108H3;0.38822!10712-109I1;0.706199!10205-103F7;0.277302!10206-103F8;0.0857318!10207-103F9;0.177329!10050-101G5;0.607542!10051-101G6;0.380103!10016-101C7;0.034697!10046-101G1;0.226559!10778-110G4;0.396037!10633-108I3;0.263415!10818-111B8;0.30707!10819-111B9;0.0178492!10820-111C1;0.0148126!10484-107A7;0.0071139!10808-111A7;0.325152!10169-103B7;0.013372!10153-102I9;0.0386977!13425-144D5;0.112831!13433-144E4;0.669006!13437-144E8;0.611799!11904-125F5;0.338515!11905-125F6;0.380533!10039-101F3;0.701071!10791-110H8;0.0147365!10017-101C8;0.0820183!10045-101F9;0.0887478!10509-107D5;0.474484!10839-111E2;0.83463!10692-109F8;0.394835!10079-102A7;0.0139455!10078-102A6;0.297743!10721-110A1;0.10353!10569-108B2;0.161226!10570-108B3;0.164988!10571-108B4;0.0945033!10647-109A8;0.0556511!10752-110D5;0.376113!10782-110G8;0.0673323!10726-110A6;0.68787!10018-101C9;0.455988!10086-102B5;0.0281566!10182-103D2;0.0184004!10165-103B3;0.0264725!10499-107C4;0.0398331!10408-106B3;0.143955!10019-101D1;0.00302573!10068-101I5;0.329836!10075-102A3;0.675237!10077-102A5;0.399706!10727-110A7;0.00223429!10775-110G1;0.0125159!10412-106B7;0.0336303!12231-129F8;0.051729!12232-129F9;0.19852!12233-129G1;0.180769!12234-129G2;0.340268!10414-106B9;0.497342!10170-103B8;0.347532!10183-103D3;0.0121293!10150-102I6;0.0157822!10174-103C3;0.0532!10155-103A2;0.204161!10038-101F2;0.182046!10838-111E1;0.0266955!10759-110E3;0.651929!10514-107E1;0.516285!10465-106H6;0.132531!10691-109F7;0.192754!10843-111E6;0.449713!10844-111E7;0.201037!11747-123G1;0.0829624!11748-123G2;0.331329!11749-123G3;0.400981!11750-123G4;0.0180326!11751-123G5;1.99333e-05!11840-124H4;0.0696925!11752-123G6;0.0509534!11753-123G7;0.276519!11754-123G8;0.205995!11755-123G9;0.116497!11756-123H1;0.0613526!11833-124G6;0.178732!11760-123H5;0.13254!11836-124G9;0.357941!11758-123H3;0.0334398!11835-124G8;0.0976134!11762-123H7;0.253297!11838-124H2;0.565264!11757-123H2;0.440374!11759-123H4;0.140609!11761-123H6;0.0403942!11842-124H6;0.389523!11837-124H1;0.0440417!10568-108B1;0.33382!13230-141I8;0.111676!13231-141I9;0.34183!10696-109G3;0.262084!10493-107B7;0.309942!10494-107B8;0.0305165!10850-111F4;0.101736!10851-111F5;0.642033!10852-111F6;0.887326!10853-111F7;0.359549!10854-111F8;0.503504!10855-111F9;0.290813!10856-111G1;0.6191!10847-111F1;0.377803!10846-111E9;0.715753!10848-111F2;0.228961!10845-111E8;0.0173145!10857-111G2;0.0341655!10858-111G3;0.0266541!10156-103A3;0.362914!11901-125F2;0.0568886!11902-125F3;0.296938!11903-125F4;0.448862!10689-109F5;0.51663!10648-109A9;0.577092!10784-110H1;0.697907!10744-110C6;0.172008!10772-110F7;0.0365182!10474-106I6;0.00836053!10600-108E6;0.105175!10684-109E9;0.867826!12226-129F3;0.583652!12227-129F4;0.411703!10508-107D4;0.103364!10539-107G8;0.0221168!10607-108F4;0.147955!10555-107I6;0.498279!10774-110F9;0.0255753!10637-108I7;0.0980024!10663-109C6;0.894465!10728-110A8;0.373336!10729-110A9;0.073957!10430-106D7;0.3572!10730-110B1;0.0735784!10813-111B3;0.0333746!10812-111B2;0.05492!10037-101F1;0.937145!10172-103C1;0.0215607!10163-103B1;0.0674716!10076-102A4;0.0775223!10073-102A1;0.0164094!10036-101E9;0.0497299!10195-103E6;0.0135224!10277-104E7;0.0385606!10434-106E2;0.119972!10550-107I1;0.00719406!10545-107H5;0.0304557!10544-107H4;0.0494024!10704-109H2;0.0902964!10510-107D6;0.685969!10558-107I9;0.250209!10020-101D2;0.616801!10732-110B3;0.891208!10049-101G4;0.373391!10698-109G5;0.30075!10437-106E5;0.00168284!10417-106C3;0.368316!10035-101E8;0.173887!10171-103B9;0.0149608!10157-103A4;0.0293969!10034-101E7;0.0433914!10072-101I9;0.0108067!10199-103F1;0.0962839!10200-103F2;0.839083!10697-109G4;0.376618!10723-110A3;0.312042!10179-103C8;0.459647!10160-103A7;0.0036644!10180-103C9;0.113572!10162-103A9;0.0134799!10021-101D3;0.493721!10840-111E3;0.377477!10706-109H4;0.245894!10033-101E6;0.164888!10032-101E5;0.0216593!10490-107B4;0.00937294!10439-106E7;0.0481322!10022-101D4;0.201405!10176-103C5;0.504229!10469-106I1;0.0624562!10067-101I4;0.359675!10411-106B6;0.96173!10471-106I3;0.027314!10030-101E3;0.0152812!10475-106I7;0.493015!10787-110H4;0.90562!10477-106I9;0.136863!10695-109G2;0.268528!11771-123I7;0.868736!11772-123I8;0.595192!11773-123I9;0.517207!10093-102C3;0.0952799!10442-106F1;0.856968!10442-106F1;0.228185!10201-103F3;0.150695!10639-108I9;0.949382!11843-124H7;0.631535!11841-124H5;0.654137!10693-109F9;0.560499!10436-106E4;0.0487786!10483-107A6;0.0734884!10282-104F3;0.0234853!10023-101D5;0.334473!10066-101I3;0.305001!10065-101I2;0.554273!10800-110I8;0.430412!10610-108F7;0.660286!10841-111E4;0.507356!10541-107H1;0.424073!10842-111E5;0.641017!10562-108A4;0.875436!10024-101D6;0.299927!10064-101I1;0.321783!10609-108F6;0.338215!10048-101G3;0.46182!10781-110G7;0.738554!10181-103D1;0.379994!10159-103A6;0.0506547!10056-101H2;0.212111!10737-110B8;0.0956507!10025-101D7;0.434437!10044-101F8;0.0117933!10424-106D1;0.143143!10463-106H4;0.161901!10616-108G4;0.124235!10486-107A9;0.708972!10062-101H8;0.136464!10202-103F4;0.354652!10158-103A5;0.881508!10441-106E9;0.263394!10031-101E4;0.457755!10063-101H9;0.0124697!10063-101H9;0.0515711!11763-123H8;0.65261!11765-123I1;0.219113!11768-123I4;0.598353!10807-111A6;0.300064!10790-110H7;0.826372!10798-110I6;0.340028!10786-110H3;0.28965!10591-108D6;0.209588!10593-108D8;0.536623!10590-108D5;0.305516!10026-101D8;0.0275506!10096-102C6;0.339254!10168-103B6;0.236728!10154-103A1;0.0206972!10209-103G2;0.165726!10061-101H7;0.523227!10027-101D9;0.822649!10043-101F7;0.0107099!10783-110G9;0.0100928!10028-101E1;0.885036!10060-101H6;0.0898796!10203-103F5;0.601517!10059-101H5;0.280478!10047-101G2;0.295086!10029-101E2;0.098636!10058-101H4;0.665943!10418-106C4;0.433617!10492-107B6;0.344513!10694-109G1;0.55746!10797-110I5;0.295356!10057-101H3;0.0490666!10100-102D1;0.483147!10055-101H1;0.616459!10204-103F6;0.676039!10191-103E2;0.249269!10563-108A5;0.707122
|name=1-CAATGACATC,CNhs11969,BestGuess:CREM_f1_HM09(0.737411560462348),T:1497.0(57.75%),B:21513.5(46.33%),P:1e-30
|name=1-CAATGACATC,CNhs11969,BestGuess:CREM_f1_HM09(0.737411560462348),T:1497.0(57.75%),B:21513.5(46.33%),P:1e-30
|tomtom_result=HAP5#MA0316.1;2;0.000639891;0.304588;0.609177;10;CAATGACATC;ACCAATCAGATCCCA;-!NFE2L1::MafG#MA0089.1;-1;0.00463559;2.20654;1;6;CAATGACATC;CATGAC;+!Pax2#MA0067.1;0;0.00609692;2.90213;1;8;CAATGACATC;GCGTGACT;-!hth#MA0227.1;-3;0.00730902;3.47909;1;6;CAATGACATC;TGACAG;+!MATALPHA2#MA0328.1;-1;0.0110154;5.24333;1;9;CAATGACATC;AATTACATG;-!NFYA#MA0060.1;6;0.012804;6.0947;1;10;CAATGACATC;CTCAGCCAATCAGCGC;+!CREB1#MA0018.2;-3;0.0134112;6.38372;1;7;CAATGACATC;TGACGTCA;+!vis#MA0252.1;-3;0.0139998;6.6639;1;6;CAATGACATC;TGACAG;+!TOS8#MA0408.1;-1;0.0160565;7.64291;1;8;CAATGACATC;TTTGACAG;-!Sox17#MA0078.1;2;0.0165262;7.86648;1;7;CAATGACATC;GACAATGAG;-!CST6#MA0286.1;-2;0.0182196;8.67253;1;8;CAATGACATC;ATGACGTAA;+!HAP4#MA0315.1;2;0.0182543;8.68903;1;10;CAATGACATC;ACCAATCAGAGGCGA;+!achi#MA0207.1;-3;0.0205659;9.78938;1;6;CAATGACATC;TGACAG;+
}}
}}

Latest revision as of 12:18, 7 September 2012

Full Name: 1-CAATGACATC,CNhs11969,BestGuess:CREM_f1_HM09(0.737411560462348),T:1497.0(57.75%),B:21513.5(46.33%),P:1e-30

Motif matrix
POACGT
1139.2211071.852145.209140.718
21083.828115.269167.664130.239
31071.852118.263137.724169.161
4169.161169.161142.2151016.463
5140.718161.6761022.451172.155
61050.894163.173137.724145.209
7140.7181067.361157.185131.736
81029.936166.167173.652127.245
9149.7158.682149.71038.918
10140.7181025.445161.676169.161

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
HAP5#MA0316.120.0006398910.3045880.60917710CAATGACATCACCAATCAGATCCCA-
NFE2L1::MafG#MA0089.1-10.004635592.2065416CAATGACATCCATGAC+
Pax2#MA0067.100.006096922.9021318CAATGACATCGCGTGACT-
hth#MA0227.1-30.007309023.4790916CAATGACATCTGACAG+
MATALPHA2#MA0328.1-10.01101545.2433319CAATGACATCAATTACATG-
NFYA#MA0060.160.0128046.0947110CAATGACATCCTCAGCCAATCAGCGC+
CREB1#MA0018.2-30.01341126.3837217CAATGACATCTGACGTCA+
vis#MA0252.1-30.01399986.663916CAATGACATCTGACAG+
TOS8#MA0408.1-10.01605657.6429118CAATGACATCTTTGACAG-
Sox17#MA0078.120.01652627.8664817CAATGACATCGACAATGAG-
CST6#MA0286.1-20.01821968.6725318CAATGACATCATGACGTAA+
HAP4#MA0315.120.01825438.68903110CAATGACATCACCAATCAGAGGCGA+
achi#MA0207.1-30.02056599.7893816CAATGACATCTGACAG+
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