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MacroAPE 1083:2-SVGTTTAAA: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;92.928;150.304;108.416;0.352!2;110.528;137.632;103.136;0.704!3;95.04;60.896;193.6;2.464!4;0.352;28.864;0.352;322.432!5;24.64;17.6;36.256;273...")
 
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;0.00149473!11600-120H7;0.0748864!11681-122H7;0.0709809!11216-116B1;0.115242!12179-129A1;0.179567!12180-129A2;0.0326768!12181-129A3;0.0196336!12176-128I7;0.0190658!12177-128I8;0.0551157!12182-129A4;0.015432!12183-129A5;0.0304996!12184-129A6;0.00567946!10809-111A8;0.0813742!10597-108E3;0.00359516!10717-109I6;0.893389!10455-106G5;0.000302688!10534-107G3;0.220143!10429-106D6;0.0730712!10464-106H5;6.29758e-05!10827-111C8;0.0221401!10789-110H6;0.0884602!10828-111C9;0.000409216!10788-110H5;0.00461229!10792-110H9;0.0693903!10765-110E9;0.0874422!10829-111D1;0.163304!10830-111D2;0.334694!10831-111D3;0.0963737!10832-111D4;0.000373496!10833-111D5;0.00565035!10764-110E8;0.0570153!10770-110F5;0.0770904!10399-106A3;0.112334!10400-106A4;0.00499151!10405-106A9;0.0084278!10834-111D6;0.00166202!10835-111D7;0.0424873!10836-111D8;0.414753!10837-111D9;0.0268557!10699-109G6;0.176904!10802-111A1;0.0622516!10796-110I4;0.201124!10010-101C1;0.080038!10810-111A9;0.418933!10421-106C7;0.693271!10708-109H6;0.0406918!12235-129G3;0.00509506!12236-129G4;0.0288404!12237-129G5;0.162283!10167-103B5;3.59408e-06!10151-102I7;0.00126157!10428-106D5;0.00606036!10795-110I3;0.738526!10805-111A4;0.684493!10052-101G7;0.21241!10189-103D9;0.236721!10589-108D4;0.201423!10425-106D2;0.947017!10427-106D4;0.00245849!10702-109G9;0.130177!10432-106D9;0.987029!10496-107C1;0.000628141!10718-109I7;0.466177!10011-101C2;0.00531447!10053-101G8;0.0425285!10686-109F2;0.0199136!10084-102B3;9.66167e-06!10012-101C3;0.00248116!10085-102B4;0.00153839!10482-107A5;0.0728359!10419-106C5;0.439918!10080-102A8;0.558874!10760-110E4;0.833868!10709-109H7;0.0783857!10710-109H8;0.0976531!10703-109H1;0.339033!10719-109I8;0.484663!10642-109A3;0.0345395!10177-103C6;0.0121968!10164-103B2;0.00401259!10173-103C2;0.00205975!10166-103B4;0.00223876!10083-102B2;0.0154474!10188-103D8;0.00246714!10552-107I3;0.00184269!10553-107I4;0.199894!10013-101C4;0.044588!10536-107G5;0.0586178!10618-108G6;0.017281!10423-106C9;0.309958!10785-110H2;0.273743!12238-129G6;0.408786!12239-129G7;0.129274!12240-129G8;0.00178918!10416-106C2;0.0843911!10801-110I9;0.315448!10766-110F1;0.0553675!10824-111C5;0.621178!10825-111C6;0.138399!10826-111C7;0.0751759!10454-106G4;0.0657801!10409-106B4;0.202448!10638-108I8;0.0138191!10636-108I6;0.21459!10513-107D9;0.00376937!10420-106C6;0.0498362!10082-102B1;0.00351566!10014-101C5;0.794518!10070-101I7;0.310058!10452-106G2;0.725852!10453-106G3;0.0531656!10449-106F8;0.130966!10042-101F6;0.192463!10069-101I6;0.0162602!10193-103E4;0.641302!10631-108I1;0.000983279!10438-106E6;0.0162879!10488-107B2;0.151411!10196-103E7;0.666754!10071-101I8;0.000340052!10071-101I8;0.454895!10041-101F5;0.573792!10451-106G1;0.288369!10450-106F9;0.0568948!10604-108F1;0.00169283!10605-108F2;0.519223!10606-108F3;0.776224!10603-108E9;0.839651!10497-107C2;0.958106!10448-106F7;0.363599!10643-109A4;0.025315!10426-106D3;0.825155!10431-106D8;0.031744!10197-103E8;0.000101127!10443-106F2;0.0165814!10815-111B5;0.00168788!10816-111B6;0.127671!10817-111B7;0.0767285!10015-101C6;0.213398!10410-106B5;0.254!10054-101G9;0.0165443!10758-110E2;0.0686349!10711-109H9;0.00161805!10040-101F4;7.95958e-06!10470-106I2;0.00161295!10415-106C1;0.909034!10198-103E9;0.806471!10614-108G2;0.063461!10612-108F9;0.0756206!10549-107H9;0.32743!10615-108G3;0.000800533!10487-107B1;0.851468!10433-106E1;0.00295353!10688-109F4;0.0299675!10444-106F3;0.242529!10444-106F3;0.000445951!10485-107A8;0.000358134!10413-106B8;9.60016e-05!10175-103C4;0.0703576!10161-103A8;0.00380106!12131-128D7;0.0166543!10624-108H3;0.41237!10712-109I1;4.56118e-06!10205-103F7;0.235299!10206-103F8;0.037362!10207-103F9;0.00206682!10050-101G5;0.0745193!10051-101G6;0.512364!10016-101C7;0.000420635!10046-101G1;0.0277892!10778-110G4;0.911953!10633-108I3;0.882926!10818-111B8;0.0633445!10819-111B9;0.130077!10820-111C1;0.181494!10484-107A7;0.123558!10808-111A7;0.2522!10169-103B7;0.0100298!10153-102I9;0.00359769!13425-144D5;0.01739!13433-144E4;0.00554217!13437-144E8;0.0282362!11904-125F5;0.0697777!11905-125F6;0.675786!10039-101F3;0.135121!10791-110H8;0.000798102!10017-101C8;0.675021!10045-101F9;2.85443e-06!10509-107D5;0.409133!10839-111E2;0.565413!10692-109F8;1.49809e-06!10079-102A7;0.0579168!10078-102A6;0.0723503!10721-110A1;0.00449106!10569-108B2;0.106544!10570-108B3;0.0316404!10571-108B4;0.186922!10647-109A8;0.63398!10752-110D5;0.00251198!10782-110G8;0.0087933!10726-110A6;0.923065!10018-101C9;6.07069e-06!10086-102B5;1.1591e-11!10182-103D2;0.307891!10165-103B3;0.0106357!10499-107C4;0.00345117!10408-106B3;0.445847!10019-101D1;0.573423!10068-101I5;0.291389!10075-102A3;0.206338!10077-102A5;0.0267165!10727-110A7;0.795455!10775-110G1;0.424113!10412-106B7;0.0131245!12231-129F8;0.0303729!12232-129F9;0.14952!12233-129G1;0.0392575!12234-129G2;0.0676238!10414-106B9;0.0304036!10170-103B8;0.715067!10183-103D3;0.00121346!10150-102I6;0.0011293!10174-103C3;0.00554492!10155-103A2;0.00305201!10038-101F2;0.0396804!10838-111E1;0.0221674!10759-110E3;0.0420471!10514-107E1;0.000122422!10465-106H6;0.915315!10691-109F7;0.0189526!10843-111E6;0.534725!10844-111E7;0.0488595!11747-123G1;0.672992!11748-123G2;0.0031772!11749-123G3;0.0454378!11750-123G4;0.056416!11751-123G5;0.746008!11840-124H4;0.899222!11752-123G6;0.92867!11753-123G7;0.0528174!11754-123G8;0.468288!11755-123G9;0.00761144!11756-123H1;0.0217797!11833-124G6;0.00406437!11760-123H5;0.0030963!11836-124G9;0.0123078!11758-123H3;0.0751759!11835-124G8;0.670655!11762-123H7;0.783135!11838-124H2;0.732007!11757-123H2;0.641193!11759-123H4;0.00296603!11761-123H6;0.166231!11842-124H6;0.426511!11837-124H1;0.546695!10568-108B1;0.522118!13230-141I8;2.46036e-07!13231-141I9;0.0424058!10696-109G3;0.042888!10493-107B7;0.000690187!10494-107B8;0.645241!10850-111F4;0.0107421!10851-111F5;0.11795!10852-111F6;0.00692031!10853-111F7;0.0396107!10854-111F8;0.00364071!10855-111F9;0.0173963!10856-111G1;0.1501!10847-111F1;0.0172866!10846-111E9;0.0022488!10848-111F2;0.00583079!10845-111E8;0.0006793!10857-111G2;0.538189!10858-111G3;0.0325035!10156-103A3;0.00226222!11901-125F2;0.00566206!11902-125F3;0.000261145!11903-125F4;0.000340735!10689-109F5;0.000237579!10648-109A9;0.138441!10784-110H1;0.0109882!10744-110C6;0.0326349!10772-110F7;0.155756!10474-106I6;5.77546e-06!10600-108E6;0.687441!10684-109E9;0.000213178!12226-129F3;1.16771e-05!12227-129F4;0.00213165!10508-107D4;0.804431!10539-107G8;0.858066!10607-108F4;0.634122!10555-107I6;0.451559!10774-110F9;0.930972!10637-108I7;0.342238!10663-109C6;0.850764!10728-110A8;0.216642!10729-110A9;0.010493!10430-106D7;0.0183971!10730-110B1;0.0176171!10813-111B3;0.829227!10812-111B2;0.0268811!10037-101F1;0.530272!10172-103C1;0.00129254!10163-103B1;0.00716496!10076-102A4;0.0133768!10073-102A1;0.0024962!10036-101E9;0.400982!10195-103E6;0.000784485!10277-104E7;0.00142046!10434-106E2;0.00159045!10550-107I1;0.981176!10545-107H5;0.0465036!10544-107H4;0.21814!10704-109H2;0.00537275!10510-107D6;0.00437924!10558-107I9;1.47695e-05!10020-101D2;0.0346387!10732-110B3;0.0130395!10049-101G4;0.00497781!10698-109G5;2.41489e-07!10437-106E5;0.970765!10417-106C3;0.0383809!10035-101E8;0.103088!10171-103B9;0.00107687!10157-103A4;0.00122174!10034-101E7;0.00515253!10072-101I9;0.00111007!10199-103F1;0.911048!10200-103F2;1.54919e-08!10697-109G4;0.0208645!10723-110A3;0.29496!10179-103C8;0.185837!10160-103A7;0.00212536!10180-103C9;0.0179087!10162-103A9;6.42793e-15!10021-101D3;2.35222e-07!10840-111E3;0.432361!10706-109H4;0.0329185!10033-101E6;5.17418e-05!10032-101E5;0.000911459!10490-107B4;0.000544597!10439-106E7;0.125238!10022-101D4;0.00881143!10176-103C5;0.0139445!10469-106I1;0.000853605!10067-101I4;0.423987!10411-106B6;0.508317!10471-106I3;0.282977!10030-101E3;0.501873!10475-106I7;0.0212952!10787-110H4;0.289864!10477-106I9;0.301511!10695-109G2;0.000266854!11771-123I7;0.484326!11772-123I8;0.0865086!11773-123I9;0.603207!10093-102C3;0.0456025!10442-106F1;4.54701e-10!10442-106F1;0.459476!10201-103F3;0.688497!10639-108I9;0.00169036!11843-124H7;0.21885!11841-124H5;0.994019!10693-109F9;0.0162377!10436-106E4;0.11903!10483-107A6;0.0461094!10282-104F3;0.10219!10023-101D5;0.00953391!10066-101I3;0.195607!10065-101I2;0.354011!10800-110I8;0.458311!10610-108F7;0.281157!10841-111E4;0.24737!10541-107H1;0.264902!10842-111E5;0.0271727!10562-108A4;0.256829!10024-101D6;0.85769!10064-101I1;0.216909!10609-108F6;0.193198!10048-101G3;0.0126356!10781-110G7;0.00561149!10181-103D1;0.00818114!10159-103A6;0.0512615!10056-101H2;0.138463!10737-110B8;0.895612!10025-101D7;0.00137197!10044-101F8;0.935143!10424-106D1;0.728666!10463-106H4;0.167973!10616-108G4;0.433474!10486-107A9;0.682105!10062-101H8;0.0798152!10202-103F4;0.675565!10158-103A5;3.31781e-07!10441-106E9;0.0185439!10031-101E4;0.0153962!10063-101H9;0.000860792!10063-101H9;0.472212!11763-123H8;0.718282!11765-123I1;0.0721749!11768-123I4;0.642113!10807-111A6;0.147105!10790-110H7;0.000217458!10798-110I6;0.0388483!10786-110H3;4.87562e-05!10591-108D6;0.0323087!10593-108D8;0.0684865!10590-108D5;0.472085!10026-101D8;0.0328387!10096-102C6;0.954565!10168-103B6;0.871133!10154-103A1;0.00337366!10209-103G2;0.0143458!10061-101H7;0.195842!10027-101D9;0.354086!10043-101F7;0.000367312!10783-110G9;0.0010631!10028-101E1;3.94694e-05!10060-101H6;5.48862e-05!10203-103F5;0.207203!10059-101H5;0.444014!10047-101G2;0.453327!10029-101E2;0.845498!10058-101H4;0.160349!10418-106C4;0.724027!10492-107B6;0.000941172!10694-109G1;0.000149096!10797-110I5;0.00547882!10057-101H3;0.0976699!10100-102D1;0.4638!10055-101H1;0.0105449!10204-103F6;0.594402!10191-103E2;0.0611813!10563-108A5;0.524163
|name=2-SVGTTTAAA,CNhs10867,BestGuess:TBP_f1_HM09(0.661697259180343),T:352.0(42.62%),B:11458.2(24.80%),P:1e-28
|name=2-SVGTTTAAA,CNhs10867,BestGuess:TBP_f1_HM09(0.661697259180343),T:352.0(42.62%),B:11458.2(24.80%),P:1e-28
|tomtom_result=ct#MA0218.1;-2;0.00301831;1.43672;1;6;CCGTTTAAA;GTTCAA;-!Tcfcp2l1#MA0145.1;1;0.00538625;2.56385;1;9;CCGTTTAAA;CCAGTTCAAACCAG;+!NR2F1#MA0017.1;0;0.0119695;5.6975;1;9;CCGTTTAAA;AGGTTCAAAGGTCA;-!ARR1#MA0274.1;-2;0.0194256;9.24658;1;7;CCGTTTAAA;ACTTGAAT;+
}}
}}

Latest revision as of 12:14, 7 September 2012

Full Name: 2-SVGTTTAAA,CNhs10867,BestGuess:TBP_f1_HM09(0.661697259180343),T:352.0(42.62%),B:11458.2(24.80%),P:1e-28

Motif matrix
POACGT
192.928150.304108.4160.352
2110.528137.632103.1360.704
395.0460.896193.62.464
40.35228.8640.352322.432
524.6417.636.256273.504
610.20878.84818.304244.64
7172.12841.184107.71230.976
8248.86455.96846.8160.352
9348.480.3520.3522.816

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
ct#MA0218.1-20.003018311.4367216CCGTTTAAAGTTCAA-
Tcfcp2l1#MA0145.110.005386252.5638519CCGTTTAAACCAGTTCAAACCAG+
NR2F1#MA0017.100.01196955.697519CCGTTTAAAAGGTTCAAAGGTCA-
ARR1#MA0274.1-20.01942569.2465817CCGTTTAAAACTTGAAT+
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MacroAPE_1083:2-SVGTTTAAA&oldid=2133584"