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Coexpression cluster:C133: Difference between revisions

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|ontology_enrichment_disease=DOID:305!9.45e-22!106;DOID:0050687!2.44e-11!143;DOID:299!2.16e-09!25;DOID:1749!1.29e-07!14
|ontology_enrichment_disease=DOID:305!9.45e-22!106;DOID:0050687!2.44e-11!143;DOID:299!2.16e-09!25;DOID:1749!1.29e-07!14
|ontology_enrichment_uberon=UBERON:0004119!2.19e-23!169;UBERON:0000925!2.19e-23!169;UBERON:0006595!2.19e-23!169;UBERON:0000481!1.72e-22!347;UBERON:0001007!6.29e-22!155;UBERON:0001555!6.29e-22!155;UBERON:0007026!6.29e-22!155;UBERON:0004921!1.11e-21!129;UBERON:0004185!1.11e-21!129;UBERON:0000077!5.74e-18!130;UBERON:0005177!3.23e-16!107;UBERON:0000062!3.52e-16!511;UBERON:0000466!3.82e-16!126;UBERON:0001041!4.16e-15!98;UBERON:0003104!7.33e-15!238;UBERON:0009142!7.33e-15!238;UBERON:0000922!1.21e-14!612;UBERON:0004111!5.69e-14!241;UBERON:0001048!6.06e-14!168;UBERON:0000923!9.72e-14!604;UBERON:0005291!9.72e-14!604;UBERON:0006598!9.72e-14!604;UBERON:0002532!9.72e-14!604;UBERON:0002050!1.16e-13!605;UBERON:0005423!1.16e-13!605;UBERON:0000464!5.29e-13!104;UBERON:0000477!9.90e-13!286;UBERON:0005911!4.66e-12!82;UBERON:0000475!6.04e-12!365;UBERON:0000483!1.06e-11!309;UBERON:0000119!1.31e-11!312;UBERON:0000467!2.25e-11!625;UBERON:0000480!3.48e-11!626;UBERON:0000468!4.22e-11!659;UBERON:0009569!1.66e-10!113;UBERON:0005409!1.15e-09!35;UBERON:0000025!1.16e-09!194;UBERON:0001004!5.09e-09!72;UBERON:0002100!6.87e-09!216;UBERON:0000064!1.06e-08!219;UBERON:0002553!1.82e-08!70;UBERON:0006554!1.99e-08!44;UBERON:0001008!2.20e-08!45;UBERON:0007023!3.21e-08!115;UBERON:0003103!3.38e-08!69;UBERON:0005172!6.49e-08!55;UBERON:0005173!6.49e-08!55;UBERON:0005157!7.93e-08!51;UBERON:0003929!9.88e-08!54;UBERON:0000160!1.37e-07!27;UBERON:0000063!3.32e-07!97;UBERON:0000489!4.48e-07!32;UBERON:0005153!4.86e-07!37;UBERON:0003886!7.20e-07!63;UBERON:0005156!8.03e-07!59;UBERON:0000990!8.03e-07!59;UBERON:0002530!8.94e-07!59
|ontology_enrichment_uberon=UBERON:0004119!2.19e-23!169;UBERON:0000925!2.19e-23!169;UBERON:0006595!2.19e-23!169;UBERON:0000481!1.72e-22!347;UBERON:0001007!6.29e-22!155;UBERON:0001555!6.29e-22!155;UBERON:0007026!6.29e-22!155;UBERON:0004921!1.11e-21!129;UBERON:0004185!1.11e-21!129;UBERON:0000077!5.74e-18!130;UBERON:0005177!3.23e-16!107;UBERON:0000062!3.52e-16!511;UBERON:0000466!3.82e-16!126;UBERON:0001041!4.16e-15!98;UBERON:0003104!7.33e-15!238;UBERON:0009142!7.33e-15!238;UBERON:0000922!1.21e-14!612;UBERON:0004111!5.69e-14!241;UBERON:0001048!6.06e-14!168;UBERON:0000923!9.72e-14!604;UBERON:0005291!9.72e-14!604;UBERON:0006598!9.72e-14!604;UBERON:0002532!9.72e-14!604;UBERON:0002050!1.16e-13!605;UBERON:0005423!1.16e-13!605;UBERON:0000464!5.29e-13!104;UBERON:0000477!9.90e-13!286;UBERON:0005911!4.66e-12!82;UBERON:0000475!6.04e-12!365;UBERON:0000483!1.06e-11!309;UBERON:0000119!1.31e-11!312;UBERON:0000467!2.25e-11!625;UBERON:0000480!3.48e-11!626;UBERON:0000468!4.22e-11!659;UBERON:0009569!1.66e-10!113;UBERON:0005409!1.15e-09!35;UBERON:0000025!1.16e-09!194;UBERON:0001004!5.09e-09!72;UBERON:0002100!6.87e-09!216;UBERON:0000064!1.06e-08!219;UBERON:0002553!1.82e-08!70;UBERON:0006554!1.99e-08!44;UBERON:0001008!2.20e-08!45;UBERON:0007023!3.21e-08!115;UBERON:0003103!3.38e-08!69;UBERON:0005172!6.49e-08!55;UBERON:0005173!6.49e-08!55;UBERON:0005157!7.93e-08!51;UBERON:0003929!9.88e-08!54;UBERON:0000160!1.37e-07!27;UBERON:0000063!3.32e-07!97;UBERON:0000489!4.48e-07!32;UBERON:0005153!4.86e-07!37;UBERON:0003886!7.20e-07!63;UBERON:0005156!8.03e-07!59;UBERON:0000990!8.03e-07!59;UBERON:0002530!8.94e-07!59
|tf_chipseq_enrich=PRDM1#639;5:4.84672631534782:0.00396228780051937:0.0190182166275308
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43,0.838874,0.938455,0.895898,0.704485,0.893098,0.77259,0.877625,0.731673,1,0.993191,0.834076,0.782878,0.923147,0.0135688,0.00950114,0.669552,0.168279,0.76142,0.503685,0.861791,0.993833,0.972384,0.991309,0.979196,0.806198,0.999261,0.975382,0.992139,0.965396,0.00485383,0.985354,0.999992,0.897237,0.888841,0.939855,0.950801,0.467775,0.706676,0.600869,0.947863,0.311079,0.999514,0.999982,0.910462,0.697515,0.902416,0.552488,0.689992,0.821608,0.993033,0.791767,0.462098,0.866712,0.999992,0.959737,0.925607,0.770382,0.82553,0.631388,0.976968,0.948461,0.931985,0.890353,0.999873,0.941981,0.992318,0.960937,0.965067,0.478937,0.0731438,0.48869,0.983867,0.86663,1,1,0.256291,0.995639,0.994457,0.957608,0.892631,0.66845,0.8339,0.595992,0.971639,0.625089,0.994978,0.641241,0.818737,0.0227034,0.824781,0.988224,0.876,0.715253,0.0252363,0.988,0.624632,0.136127,0.878533,0.745594,0.766429,0.872578,0.999331,0.995275,0.996817,0.995654,0.714375,0.968983,0.972104,0.999443,0.0765079,0.946826,0.844564,0.0355104,1,0.244434,0.437729,0.275072,0.940183,0.55989,0.460837,0.990387,0.0118986,0.609609,0.999378,0.503302,0.990889,0.996595,0.210236,0.824567,0.981163,0.973222,0.633588,0.629576,0.0300292,0.93437,0.989083,0.934857,0.83314,0.0110091,0.51736,0.695843,0.958252,0.972041,0.690748,0.837396,0.986544,0.88244,0.965007,0.984895,0.978689,0.953514,0.779987,0.623371,0.999966,0.936795,0.41378,0.532095,0.32902,0.309183,1,1,0.496154,0.945627,0.987383,0.866585,0.473797,0.995979,0.999964,0.899269,0.903794,0.99204,0.888086,0.0117707,0.00308388,0.979453,0.190982,0.00700047,0.874396,0.02633,0.934751,0.422395,0.898493,0.978428,0.952745,0.999234,0.480457,0.809276,0.927537,0.0461767,0.0338282,1,1,0.895472,0.938684,0.997185,0.838566,0.553108,0.828191,0.875641,0.999995,0.679969,0.197336,0.461991,0.673168,0.632361,0.819717,0.92774,0.354478,0.699367,0.994956,0.387813,1,0.484271,0.999999,0.999648,0.807878,1,0.96978,0.0943418,1,0.546555,1,0.00449712,0.999998,1,0.999976,0.700987,0.973353,0.0377198,0.0647355,0.861319,0.82282,0.814436,0.003532,0.982559,0.968211,0.966589,0.835514,0.0670164,0.997727,0.700001,0.217471,0.8307,0.55064,0.987234,0.72815,0.999885,0.997277,0.999873,0.313901,0.939161,0.0375662,0.591704,0.873408,0.097999,0.999983,0.303732,0.751574,0.999996,0.899506,0.584855,0.327689,0.200416,0.971905,1,0.662626,0.812846,0.397689,0.991143,1,0.00228549,0.86942,0.556123,0.977036,0.502497,0.867026,0.22571,0.960302,0.697393,0.74673,0.816595,0.757109,0.93593,0.982989,0.0247694,0.806727,0.480135,0.724793,0.795428,0.752298,0.697951,0.999999,0.99999,0.994687,0.44643,0.591733,0.992194,0.985897,0.374897,0.942209,0.948719,0.95051,0.988647,0.158168,0.68878,0.997558,0.930796,0.371729,0.0898851,0.999402,0.119584,0.108801,0.992887,0.955451,0.527124,0.0675166,0.584535,0.826939,0.990083,0.0266438,0.983702,0.716252,0.513864,0.00342325,0.995447,0.993113,0.563129,0.993444,0.996398,0.555788,0.894388,0.992671,0.500963,0.306959,0.593048,0.460318,0.734812,0.869174,0.00854441,0.657077,0.821002,0.188386,0.843354,0.986971,0.336753,0.611324,0.986144,0.304511,0.913092,0.119343,0.909041,0.0537997,0.0409009,0.365716,0.882102,0.756864,0.0122662,0.000349299,0.78209,0.999257,0.232599,0.0147609,0.153122,0.0193517,0.787399,0.191691,0.988212,0.394373,0.944709,0.974942,0.958726,0.912356,0.111866,0.980162,0.739281,0.355731,0.957576,0.903304,0.893076,0.907884,0.00016579,0.977169,0.54982,0.630058,0.331321,0.831291,0.0943485,0.911992,0.879189,0.449565,0.567653,0.319577,0.772665,0.00011943,0.333226,0.891557,0.938202,0.922515,0.791909,0.689306,0.522622,0.938594,0.871763,0.984957,0.886117,0.799218,0.980568,0.608964,0.925247,0.553897,0.897895,0.709214,0.966745,0.596733,0.878591,0.808095,0.917433,0.115025,0.0119258,0.00542641,0.833345,0.916919,0.972777,0.971028,0.755618,0.682756,0.810533,0.661802,0.929098,0.94865,0.761367,0.862722,0.971,0.971189,0.77626,0.0201002,0.974926,0.857157,0.981489,0.986416,0.90005,0.883881,0.884866,0.10851,0.918384,0.750573,0.974835,0.848136,0.918235,0.999524,0.993483,0.911087,0.957813,0.999505,0.99593,0.535376,0.845829,0.950479,0.980996,0.799659,0.993321,0.955449,0.873884,0.998065,0.966945,0.870633,0.821018,0.98582,0.816799,0.784372,0.462584,0.989359,0.896081,0.992622,0.690072,0.96556,0.366565,0.432196,0.824391,0.958043,0.990911,0.52676,0.96487,0.63375,0.114621,0.00769976,0.978495,0.990201,0.896631,0.982408,0.515171,0.484762,0.998932,0.478644,0.914821,0.996823,0.916567,0.0830136,0.821481,0.751638,0.0715492,0.989339,0.936559,0.624451,0.891465,0.82602,0.989632,0.982974,0.107647,0.927343,0.666929,0.973905,0.649345,0.988201,0.953354,0.936802,0.382612,0.78549,0.921985,0.996788,0.473635,0.235349
}}
}}

Revision as of 14:31, 5 September 2012


Full id: C133_signet_gall_small_kidney_colon_ductal_adenocarcinoma



Phase1 CAGE Peaks

Hg19::chr10:105812536..105812558,+p@chr10:105812536..105812558
+
Hg19::chr10:6777736..6777754,-p@chr10:6777736..6777754
-
Hg19::chr10:6779446..6779460,+p2@ENST00000417112
Hg19::chr10:98336837..98336873,-p24@TM9SF3
Hg19::chr10:98370687..98370694,-p@chr10:98370687..98370694
-
Hg19::chr11:67124405..67124419,-p13@POLD4
Hg19::chr12:15885722..15885733,-p@chr12:15885722..15885733
-
Hg19::chr12:18400438..18400444,-p@chr12:18400438..18400444
-
Hg19::chr12:18415665..18415682,+p@chr12:18415665..18415682
+
Hg19::chr12:18951148..18951185,+p@chr12:18951148..18951185
+
Hg19::chr12:71559332..71559334,-p@chr12:71559332..71559334
-
Hg19::chr12:93412598..93412606,-p@chr12:93412598..93412606
-
Hg19::chr13:74185074..74185088,+p@chr13:74185074..74185088
+
Hg19::chr13:74185102..74185107,+p@chr13:74185102..74185107
+
Hg19::chr13:74185269..74185294,+p@chr13:74185269..74185294
+
Hg19::chr13:74185299..74185308,+p@chr13:74185299..74185308
+
Hg19::chr13:74185317..74185327,+p@chr13:74185317..74185327
+
Hg19::chr14:101373702..101373710,-p@chr14:101373702..101373710
-
Hg19::chr14:101373754..101373767,-p@chr14:101373754..101373767
-
Hg19::chr14:54581722..54581743,-p@chr14:54581722..54581743
-
Hg19::chr14:63785645..63785649,-p1@GPHB5
Hg19::chr15:60662919..60662931,-p@chr15:60662919..60662931
-
Hg19::chr15:60662957..60662966,-p@chr15:60662957..60662966
-
Hg19::chr16:2031433..2031447,-p2@NOXO1
Hg19::chr16:2031464..2031475,-p1@NOXO1
Hg19::chr16:2141414..2141444,+p@chr16:2141414..2141444
+
Hg19::chr16:2141513..2141528,+p@chr16:2141513..2141528
+
Hg19::chr16:85016361..85016372,+p@chr16:85016361..85016372
+
Hg19::chr17:39928474..39928485,-p17@JUP
Hg19::chr17:39928501..39928513,-p10@JUP
Hg19::chr17:39928947..39928958,-p19@JUP
Hg19::chr17:50828983..50828988,+p@chr17:50828983..50828988
+
Hg19::chr17:51139124..51139129,+p@chr17:51139124..51139129
+
Hg19::chr17:56492808..56492818,-p3@AB527734
Hg19::chr17:56492824..56492866,-p1@AB527734
Hg19::chr17:56492878..56492893,-p2@AB527734
Hg19::chr17:56492937..56492946,-p11@RNF43
Hg19::chr17:56492953..56492966,-p9@RNF43
Hg19::chr17:56492989..56493006,-p8@RNF43
Hg19::chr17:56493024..56493038,-p14@RNF43
Hg19::chr17:56493069..56493077,-p10@RNF43
Hg19::chr17:67171837..67171845,-p3@ABCA10
Hg19::chr17:67171909..67171949,-p6@ABCA10
Hg19::chr17:67171957..67171968,-p9@ABCA10
Hg19::chr17:73089589..73089617,+p5@SLC16A5
Hg19::chr17:73091198..73091208,-p@chr17:73091198..73091208
-
Hg19::chr17:73642372..73642390,+p4@C17orf110
Hg19::chr17:73642401..73642431,+p1@C17orf110
Hg19::chr17:73642486..73642498,+p5@C17orf110
Hg19::chr17:73843311..73843323,-p10@WBP2
Hg19::chr17:73843328..73843339,-p11@WBP2
Hg19::chr17:74459187..74459193,-p@chr17:74459187..74459193
-
Hg19::chr17:74459285..74459291,-p@chr17:74459285..74459291
-
Hg19::chr17:74459307..74459308,-p@chr17:74459307..74459308
-
Hg19::chr17:74459348..74459359,-p@chr17:74459348..74459359
-
Hg19::chr18:12701539..12701579,+p@chr18:12701539..12701579
+
Hg19::chr18:12701647..12701671,+p@chr18:12701647..12701671
+
Hg19::chr19:1654223..1654233,-p@chr19:1654223..1654233
-
Hg19::chr19:1654251..1654268,-p@chr19:1654251..1654268
-
Hg19::chr19:1753387..1753395,-p@chr19:1753387..1753395
-
Hg19::chr1:174872019..174872028,+p@chr1:174872019..174872028
+
Hg19::chr1:178009766..178009803,+p@chr1:178009766..178009803
+
Hg19::chr1:183976829..183976846,-p@chr1:183976829..183976846
-
Hg19::chr1:183976861..183976878,-p@chr1:183976861..183976878
-
Hg19::chr1:183976888..183976895,-p@chr1:183976888..183976895
-
Hg19::chr1:184005350..184005356,-p@chr1:184005350..184005356
-
Hg19::chr1:187929716..187929735,+p@chr1:187929716..187929735
+
Hg19::chr1:188011911..188011936,+p@chr1:188011911..188011936
+
Hg19::chr1:205905031..205905037,-p4@SLC26A9
Hg19::chr1:233843247..233843266,-p@chr1:233843247..233843266
-
Hg19::chr1:233843288..233843295,-p@chr1:233843288..233843295
-
Hg19::chr1:53890334..53890349,+p@chr1:53890334..53890349
+
Hg19::chr1:53919202..53919204,-p@chr1:53919202..53919204
-
Hg19::chr20:25176450..25176471,+p2@ENTPD6
Hg19::chr21:25744883..25744889,-p@chr21:25744883..25744889
-
Hg19::chr2:168920401..168920426,-p@chr2:168920401..168920426
-
Hg19::chr2:174136708..174136746,-p2@MLK7-AS1
Hg19::chr2:220034719..220034742,-p1@SLC23A3
Hg19::chr2:220034745..220034768,-p2@SLC23A3
Hg19::chr2:231965004..231965009,-p@chr2:231965004..231965009
-
Hg19::chr2:242312343..242312376,+p4@FARP2
Hg19::chr2:27528919..27528940,+p@chr2:27528919..27528940
+
Hg19::chr2:27529044..27529063,+p@chr2:27529044..27529063
+
Hg19::chr2:27529068..27529081,+p@chr2:27529068..27529081
+
Hg19::chr2:27529092..27529098,+p@chr2:27529092..27529098
+
Hg19::chr2:99902552..99902557,+p@chr2:99902552..99902557
+
Hg19::chr3:14058640..14058664,+p9@TPRXL
Hg19::chr3:14058772..14058785,+p7@TPRXL
Hg19::chr3:14058794..14058815,+p1@TPRXL
Hg19::chr3:14061155..14061180,+p8@TPRXL
Hg19::chr3:142285096..142285107,-p@chr3:142285096..142285107
-
Hg19::chr3:149193579..149193585,+p9@TM4SF4
Hg19::chr3:168991187..168991198,-p@chr3:168991187..168991198
-
Hg19::chr3:168991209..168991221,-p@chr3:168991209..168991221
-
Hg19::chr3:168991629..168991647,-p@chr3:168991629..168991647
-
Hg19::chr3:169101687..169101694,-p@chr3:169101687..169101694
-
Hg19::chr3:169101737..169101746,-p@chr3:169101737..169101746
-
Hg19::chr3:169101774..169101782,-p@chr3:169101774..169101782
-
Hg19::chr3:42226097..42226118,+p@chr3:42226097..42226118
+
Hg19::chr3:94366924..94366944,+p@chr3:94366924..94366944
+
Hg19::chr4:22270286..22270327,-p@chr4:22270286..22270327
-
Hg19::chr4:77637382..77637399,+p13@SHROOM3
Hg19::chr4:77637400..77637431,+p7@SHROOM3
Hg19::chr5:114750892..114750903,-p@chr5:114750892..114750903
-
Hg19::chr5:114750907..114750924,-p@chr5:114750907..114750924
-
Hg19::chr5:135880548..135880583,-p@chr5:135880548..135880583
-
Hg19::chr5:164891824..164891866,-p@chr5:164891824..164891866
-
Hg19::chr6:106905153..106905161,-p@chr6:106905153..106905161
-
Hg19::chr6:24193738..24193759,-p@chr6:24193738..24193759
-
Hg19::chr6:34208414..34208429,+p16@HMGA1
Hg19::chr7:116451016..116451023,+p8@CAPZA2
Hg19::chr7:117120106..117120117,+p5@CFTR
Hg19::chr7:117355858..117355864,-p@chr7:117355858..117355864
-
Hg19::chr7:117355869..117355891,-p@chr7:117355869..117355891
-
Hg19::chr7:117355907..117355916,-p@chr7:117355907..117355916
-
Hg19::chr7:117355930..117355937,-p@chr7:117355930..117355937
-
Hg19::chr7:117355942..117355945,-p@chr7:117355942..117355945
-
Hg19::chr7:117356954..117356963,-p@chr7:117356954..117356963
-
Hg19::chr7:960422..960430,-p20@ADAP1
Hg19::chr7:960534..960548,-p16@ADAP1
Hg19::chr8:17918981..17918993,-p14@ASAH1
Hg19::chr8:66639520..66639548,-p@chr8:66639520..66639548
-
Hg19::chr9:139312981..139312986,+p4@PMPCA
Hg19::chr9:139313013..139313034,+p3@PMPCA
Hg19::chr9:14300257..14300268,-p@chr9:14300257..14300268
-
Hg19::chr9:3898759..3898766,-p@chr9:3898759..3898766
-
Hg19::chr9:3898804..3898817,-p@chr9:3898804..3898817
-
Hg19::chr9:3898831..3898843,-p@chr9:3898831..3898843
-
Hg19::chr9:3899086..3899097,-p@chr9:3899086..3899097
-
Hg19::chr9:3900888..3900935,-p@chr9:3900888..3900935
-
Hg19::chr9:74355313..74355333,-p@chr9:74355313..74355333
-
Hg19::chrX:132849095..132849103,+p@chrX:132849095..132849103
+
Hg19::chrX:69698896..69698934,+p7@DLG3
Hg19::chrX:76923993..76924035,-p@chrX:76923993..76924035
-
Hg19::chrX:96374877..96374886,+p@chrX:96374877..96374886
+
Hg19::chrX:96374896..96374901,+p@chrX:96374896..96374901
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0005912adherens junction0.00215716088844199
GO:0001936regulation of endothelial cell proliferation0.00898727966365281
GO:0001935endothelial cell proliferation0.00898727966365281
GO:0042127regulation of cell proliferation0.0194174866352181
GO:0030324lung development0.021744029977528
GO:0030323respiratory tube development0.021744029977528
GO:0008285negative regulation of cell proliferation0.021744029977528
GO:0008092cytoskeletal protein binding0.0245014610963039
GO:0005515protein binding0.0245014610963039
GO:0005224ATP-binding and phosphorylation-dependent chloride channel activity0.0245014610963039
GO:0005260channel-conductance-controlling ATPase activity0.0245014610963039
GO:0005624membrane fraction0.0255493356009633
GO:0016324apical plasma membrane0.0255493356009633
GO:0006820anion transport0.0255493356009633
GO:0008283cell proliferation0.0255493356009633
GO:0042975peroxisome proliferator activated receptor binding0.0255493356009633
GO:0043482cellular pigment accumulation0.0255493356009633
GO:0004240mitochondrial processing peptidase activity0.0255493356009633
GO:0043476pigment accumulation0.0255493356009633
GO:0006345loss of chromatin silencing0.0255493356009633
GO:0003680AT DNA binding0.0255493356009633
GO:0045177apical part of cell0.0255493356009633
GO:0051128regulation of cellular component organization and biogenesis0.0310797031657759
GO:0016020membrane0.0310797031657759
GO:0016322neuron remodeling0.0310797031657759
GO:0033059cellular pigmentation0.0310797031657759
GO:0000267cell fraction0.0332688085403726
GO:0030054cell junction0.0347455676759035
GO:0035295tube development0.0347455676759035
GO:0003891delta DNA polymerase activity0.0347455676759035
GO:0046965retinoid X receptor binding0.0347455676759035
GO:0017110nucleoside-diphosphatase activity0.0384569858713336
GO:0005916fascia adherens0.0384569858713336
GO:0006337nucleosome disassembly0.0384569858713336
GO:0031498chromatin disassembly0.0384569858713336
GO:0001938positive regulation of endothelial cell proliferation0.042492581409193
GO:0015355secondary active monocarboxylate transmembrane transporter activity0.042492581409193
GO:0009898internal side of plasma membrane0.042492581409193
GO:0045815positive regulation of gene expression, epigenetic0.0459337426993214
GO:0031116positive regulation of microtubule polymerization0.0459337426993214
GO:0050998nitric-oxide synthase binding0.0459337426993214
GO:0048523negative regulation of cellular process0.04677588402999
GO:0030321transepithelial chloride transport0.04677588402999
GO:0031112positive regulation of microtubule polymerization or depolymerization0.04677588402999
GO:0031113regulation of microtubule polymerization0.04677588402999
GO:0045176apical protein localization0.04677588402999
GO:0048519negative regulation of biological process0.0493865270640579
GO:0016601Rac protein signal transduction0.0493865270640579
GO:0042974retinoic acid receptor binding0.0493865270640579



Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>


Cell Type
Ontology termp-valuen
epithelial cell2.49e-21254
endodermal cell5.09e-1259
endo-epithelial cell2.37e-0943
Uber Anatomy
Ontology termp-valuen
endoderm-derived structure2.19e-23169
endoderm2.19e-23169
presumptive endoderm2.19e-23169
multi-tissue structure1.72e-22347
digestive system6.29e-22155
digestive tract6.29e-22155
primitive gut6.29e-22155
subdivision of digestive tract1.11e-21129
endodermal part of digestive tract1.11e-21129
mixed endoderm/mesoderm-derived structure5.74e-18130
trunk region element3.23e-16107
organ3.52e-16511
immaterial anatomical entity3.82e-16126
foregut4.16e-1598
mesenchyme7.33e-15238
entire embryonic mesenchyme7.33e-15238
embryo1.21e-14612
anatomical conduit5.69e-14241
primordium6.06e-14168
germ layer9.72e-14604
embryonic tissue9.72e-14604
presumptive structure9.72e-14604
epiblast (generic)9.72e-14604
embryonic structure1.16e-13605
developing anatomical structure1.16e-13605
anatomical space5.29e-13104
anatomical cluster9.90e-13286
endo-epithelium4.66e-1282
organism subdivision6.04e-12365
epithelium1.06e-11309
cell layer1.31e-11312
anatomical system2.25e-11625
anatomical group3.48e-11626
multi-cellular organism4.22e-11659
subdivision of trunk1.66e-10113
gastrointestinal system1.15e-0935
tube1.16e-09194
respiratory system5.09e-0972
trunk6.87e-09216
organ part1.06e-08219
anatomical cavity1.82e-0870
urinary system structure1.99e-0844
renal system2.20e-0845
adult organism3.21e-08115
compound organ3.38e-0869
abdomen element6.49e-0855
abdominal segment element6.49e-0855
epithelial fold7.93e-0851
gut epithelium9.88e-0854
intestine1.37e-0727
organ segment3.32e-0797
cavitated compound organ4.48e-0732
epithelial bud4.86e-0737
body cavity precursor7.20e-0763
reproductive structure8.03e-0759
reproductive system8.03e-0759
gland8.94e-0759
Disease
Ontology termp-valuen
carcinoma9.45e-22106
cell type cancer2.44e-11143
adenocarcinoma2.16e-0925
squamous cell carcinoma1.29e-0714


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data


(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

TF#promotersEnrichmentp-valueq-value
PRDM1#63954.846726315347820.003962287800519370.0190182166275308



Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data


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