Personal tools

Coexpression cluster:C1899: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 5: Line 5:
|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000475!1.13e-24!365;UBERON:0000481!1.08e-18!347;UBERON:0005256!1.57e-15!143;UBERON:0000119!6.44e-15!312;UBERON:0003102!6.68e-15!95;UBERON:0000486!8.14e-15!82;UBERON:0000914!1.67e-14!83;UBERON:0002329!1.67e-14!83;UBERON:0003077!1.67e-14!83;UBERON:0003059!1.67e-14!83;UBERON:0007282!1.67e-14!83;UBERON:0009618!1.67e-14!83;UBERON:0007285!1.67e-14!83;UBERON:0000483!2.31e-14!309;UBERON:0002100!2.52e-14!216;UBERON:0000468!5.13e-14!659;UBERON:0003104!3.63e-13!238;UBERON:0009142!3.63e-13!238;UBERON:0000467!2.32e-12!625;UBERON:0000480!3.73e-12!626;UBERON:0004290!5.69e-12!70;UBERON:0001134!3.62e-11!61;UBERON:0002036!3.62e-11!61;UBERON:0003082!3.62e-11!61;UBERON:0002385!1.67e-10!63;UBERON:0001015!1.67e-10!63;UBERON:0000383!1.67e-10!63;UBERON:0000064!4.80e-09!219;UBERON:0000477!6.28e-09!286;UBERON:0000490!1.51e-08!138;UBERON:0002050!3.67e-08!605;UBERON:0005423!3.67e-08!605;UBERON:0000923!3.89e-08!604;UBERON:0005291!3.89e-08!604;UBERON:0006598!3.89e-08!604;UBERON:0002532!3.89e-08!604;UBERON:0007100!5.84e-08!27;UBERON:0000922!1.03e-07!612;UBERON:0004111!1.20e-07!241;UBERON:0002199!3.68e-07!45;UBERON:0002416!3.68e-07!45;UBERON:0004872!4.21e-07!84;UBERON:0001444!4.61e-07!48;UBERON:0003914!4.85e-07!118;UBERON:0000062!5.49e-07!511;UBERON:0003103!8.34e-07!69
|ontology_enrichment_uberon=UBERON:0000475!1.13e-24!365;UBERON:0000481!1.08e-18!347;UBERON:0005256!1.57e-15!143;UBERON:0000119!6.44e-15!312;UBERON:0003102!6.68e-15!95;UBERON:0000486!8.14e-15!82;UBERON:0000914!1.67e-14!83;UBERON:0002329!1.67e-14!83;UBERON:0003077!1.67e-14!83;UBERON:0003059!1.67e-14!83;UBERON:0007282!1.67e-14!83;UBERON:0009618!1.67e-14!83;UBERON:0007285!1.67e-14!83;UBERON:0000483!2.31e-14!309;UBERON:0002100!2.52e-14!216;UBERON:0000468!5.13e-14!659;UBERON:0003104!3.63e-13!238;UBERON:0009142!3.63e-13!238;UBERON:0000467!2.32e-12!625;UBERON:0000480!3.73e-12!626;UBERON:0004290!5.69e-12!70;UBERON:0001134!3.62e-11!61;UBERON:0002036!3.62e-11!61;UBERON:0003082!3.62e-11!61;UBERON:0002385!1.67e-10!63;UBERON:0001015!1.67e-10!63;UBERON:0000383!1.67e-10!63;UBERON:0000064!4.80e-09!219;UBERON:0000477!6.28e-09!286;UBERON:0000490!1.51e-08!138;UBERON:0002050!3.67e-08!605;UBERON:0005423!3.67e-08!605;UBERON:0000923!3.89e-08!604;UBERON:0005291!3.89e-08!604;UBERON:0006598!3.89e-08!604;UBERON:0002532!3.89e-08!604;UBERON:0007100!5.84e-08!27;UBERON:0000922!1.03e-07!612;UBERON:0004111!1.20e-07!241;UBERON:0002199!3.68e-07!45;UBERON:0002416!3.68e-07!45;UBERON:0004872!4.21e-07!84;UBERON:0001444!4.61e-07!48;UBERON:0003914!4.85e-07!118;UBERON:0000062!5.49e-07!511;UBERON:0003103!8.34e-07!69
|tf_chipseq_enrich=CTCFL#140690;5:19.7464743589744:3.32745051287657e-07:1.65878569982967e-05!E2F1#1869;5:4.90738921487932:0.000351281809925646:0.0035320613215389!E2F6#1876;5:5.01715573169739:0.000314497859929779:0.0032303149088519
|tfbs_overrepresentation=0.23317,0.0958562,0.877965,0.078254,0.310241,0.110737,0.0706464,0.5903,0.0539364,0.0424746,0.221396,0.346629,0.294377,0.201017,0.235304,0.101024,0.223746,0.158251,0.0865245,0.173528,0.29418,0.211047,0.13286,0.153106,0.0683222,0.332688,0.324018,0.146582,0.227906,0.150721,0.31768,0.182756,0.0298713,0.322378,0.108398,0.136785,1.49365e-07,0.070583,0.192426,0.108683,0.155571,0.0406818,0.222325,0.287476,0.193292,0.0596699,0.0625547,0.28382,0.178503,7.54537e-05,0.243359,0.0886583,0.114185,0.150136,0.308837,0.0632035,0.172598,0.328738,0.127101,0.169687,0.0485674,0.236408,0.174369,0.123348,0.0892839,0.0827236,0.515105,0.0980005,0.139298,0.262613,0.547889,0.110232,0.143944,0.190944,0.012429,0.0283664,0.155593,0.0717582,0.0613084,0.0120583,0.154245,0.348799,0.0698251,0.183986,0.436695,0.38341,0.104918,0.323505,0.021784,0.102375,0.138802,0.0812726,0.153861,0.0777027,0.138224,0.184264,0.182508,0.242703,0.149747,0.413729,0.0939617,0.416542,0.00228548,0.0610111,0.337778,0.0672793,0.109136,0.497282,0.228612,0.407248,0.285407,0.0560173,0.23661,0.0293017,0.162943,0.0556189,0.0336673,0.0926302,0.220791,0.13579,0.262107,0.331577,0.222452,0.138843,0.164723,0.277102,0.146529,0.0245339,0.136609,0.214614,0.0973103,0.121587,0.0935301,0.0376876,0.200735,0.173595,0.105753,0.0905147,0.0544577,0.0065834,0.037671,0.203496,0.316207,0.246229,0.194394,0.112838,0.159217,0.1364,0.0640569,0.193163,0.311509,0.227801,0.282656,0.0439093,0.070163,0.188135,0.121467,0.350865,0.0846706,0.0555742,0.349932,0.153706,0.186743,0.23397,0.412853,0.183121,0.065826,0.203135,0.0663482,0.463935,0.281162,0.218835,0.646289,0.0885874,0.129639,0.145577,0.22277,0.284267,0.27935,0.0586816,0.250461,0.195671,0.0452583,0.185103,0.11983,0.190123,0.286036,0.0660586,0.134265,0.272191,0.172119,0.292239,0.00147953,0.351465,0.18064,0.0772176,0.126988,0.0984435,0.110187,0.176022,0.144361,0.0986228,0.0508565,0.0989516,0.21691,0.393782,0.412989,0.240045,0.319604,0.279218,0.0752697,0.167805,0.193654,0.180992,0.464566,0.265567,0.258402,0.162511,0.102771,0.165687,0.225173,0.540012,0.246322,0.253699,0.120044,0.201982,0.220536,0.139142,0.0987108,0.09782,0.410084,0.554981,0.0687568,0.124225,0.1547,0.150448,0.0774663,0.398789,0.257365,0.331711,0.285222,0.511,0.158559,0.134615,0.186192,0.217494,0.132125,0.179065,0.540443,0.187334,0.250769,0.289141,0.289982,0.157983,0.158078,0.251693,0.172268,0.313249,0.113261,0.0601691,0.101058,0.274448,0.25718,0.204241,0.0568578,0.131428,0.131579,0.148683,0.188945,0.122666,0.419402,0.103245,0.387442,0.0778535,0.14011,0.0626022,0.2074,0.769028,0.0603274,0.252309,0.50169,0.748392,0.784283,9.13083e-10,0.493893,0.808889,0.396701,0.258806,0.541514,0.127393,0.675971,0.487888,0.568246,0.486439,0.720623,0.796904,0.410803,0.43779,0.579996,0.0108647,0.766049,0.447317,0.292173,0.528152,0.284119,0.601223,0.176507,0.488132,0.336705,0.604733,0.545464,0.645432,0.00212057,0.714193,0.706516,0.537972,0.591562,0.302575,0.385794,0.417358,0.450485,0.665656,0.470142,0.344006,0.688397,0.785741,0.426591,0.467379,0.762263,0.437202,0.628658,0.419367,0.592924,0.438692,0.660225,0.0739852,0.541742,0.762222,0.790857,0.285074,0.018127,1.81112e-09,0.0297733,0.415372,0.362164,0.289863,0.507647,0.137929,0.409489,0.80581,0.688223,0.699429,0.707862,0.379008,0.423719,0.655494,0.256985,0.109234,0.11883,0.288602,0.779806,0.0115589,0.766165,0.588284,0.843506,0.147327,0.737273,0.628596,0.337121,0.464864,0.861932,0.0740433,0.121457,0.351733,0.00220507,0.773103,0.687274,0.441154,0.503865,0.660832,0.43388,0.483295,0.000836086,0.418989,0.935814,0.239606,0.350461,0.495024,0.307173,0.246694,0.407051,0.598317,0.300406,0.597346,0.702113,3.77769e-05,0.493489,0.229501,0.230597,0.195392,0.544572,0.627794,0.641833,0.383956,0.241286,0.0764074,0.217887,0.393543,0.214395,0.158849,0.732038,0.439833,0.427746,0.504398,0.456725,0.455709,0.784142,0.688249,0.349388,0.427794,0.398041,0.524026,0.347879,0.0576919,0.593219,0.529253,0.64728,0.031869,0.319495,0.00178136,0.827435,0.616333,0.407113,0.498776,0.387091,0.423517,0.224914,0.636791,0.0359783,0.251608,0.076676,0.539805,0.356278,0.295455,0.144104,0.0972855,0.710825,0.80526,0.508875,0.725283,0.512109,0.658411,0.578577,0.818493,0.809533,0.469232,0.113555,0.0910724,0.299839,0.126587,0.0940929,0.22877,0.343849,0.315824,0.622796,0.0751409,0.0498759,0.179502,0.43406,0.0715061,0.452515,0.201779,0.214491,0.171725,0.412647,0.102448,0.000184904,0.029672,0.453305,0.421335,0.561724,0.0762646,0.266371,0.183582,0.168118,0.145381,0.140277,0.251925,0.172066,0.0720324,0.00647589,0.19738,0.205854,0.32541,0.301472,0.507714,0.0818982,0.134306,0.108669,0.284804,0.0169728,0.338195,0.146979,0.304235,0.210475,0.00544513,0.0790025,0.310539,0.0119441,0.203728,0.275452,0.288155,0.265827,0.0105597,0.153627,0.0186891,0.342497,0.171961,0.415228,0.00800917,0.272406,0.223952,0.327153,0.0496113,0.20949,0.0730994,0.0857377,0.323267,0.24204,0.129414,0.157037,0.252398,0.197279,0.146467,0.0912686,0.425114,0.123863,0.218241,0.0242146,0.10708,0.327369,0.339826,0.12998,0.123097,0.254847,0.300809,0.0898207,0.126545,0.0918749,0.0686325,0.0569043,0.0639461,0.387306,0.267408,0.312064,0.080156,0.274185,0.53753,0.0545112,0.00618348,0.33844,0.0649137,0.0974216,0.595767,0.195675,0.174786,0.176557,0.0917509,0.0472148,1.41908e-06,0.229138,0.0639045,0.141461,0.0900204,0.228387,0.385962,0.334921,0.296227,0.208788,0.566117,0.36304,0.430936,0.123626,0.270619,0.132705,0.285556,0.0052066,0.233835,0.224471,0.262929,0.223204,0.143824,0.460679,0.431098,0.0775891,0.153079,9.78096e-07,0.211515,0.125701,0.175283,0.204954,0.209341,3.47252e-11,0.629422,0.084895,0.160115,0.0819954,0.10091,0.122658,0.151161,0.228398,0.056055,0.120552,0.41771,4.3357e-06,0.830533,0.335207,0.434016,0.190688,0.299739,0.278645,1.62728e-07,0.0940982,0.0780533,0.202744,0.0993772,0.274769,0.448923,0.11602,0.344528,0.436413,0.0585992,0.20045,0.274438,4.10608e-10,4.85072e-12,0.319826,0.336512,0.173868,0.109708,0.174594,0.0809806,0.154589,0.318794,0.122767,0.0749261,0.176858,0.114361,0.347759,0.242462,0.0620267,0.211111,0.0738743,0.0882327,0.183058,0.150073,0.270522,0.16872,0.341388,0.0934526,0.359135,0.123404,0.00268781,0.240825,0.3033,0.00849634,0.163542,0.483244,0.27134,0.500871,0.239667,0.10226,0.29809,0.235147,3.11183e-05,0.245965,0.116923,0.148426,0.0983658,0.228743,0.238223,0.156976,0.244789,0.267391,0.301441,0.21807,0.350528,0.382904,0.432408,0.190404,0.135865,0.488841,0.18137,0.180609,0.291283,0.273972,0.153023,0.400137,0.37958,0.22307,0.160699,5.89267e-08,0.166736,0.181253,0.0422294,0.263877,0.146486,0.769574,0.262486,0.294204,0.131936,0.288826,0.246621,0.463617,0.0333587,0.0965376,0.0822869,0.0432352,0.336564,0.35463,0.581771,0.0805078,0.0594155,0.587524,0.208795,0.0713793,0.212621,4.91683e-06,0.53612,0.629713,0.581874,0.355154,0.377285,0.619037,0.537088,0.603804,0.629445,0.306963,0.569605,0.526495,0.580285,0.550495,0.424482,0.820986,0.610475,0.881697,0.561689,0.672416,0.685628,0.623136,0.708698,2.6218e-11,4.46467e-09,0.349068,0.70429,0.476117,0.557035,0.427789,0.689998,0.0119463,0.0238314,0.433702,0.258394,0.644878,0.432123,0.759415,0.661773,0.494975,0.0903515,0.392155,0.626931,0.371758,2.4212e-06,0.562417,0.0738477,0.128028,0.254547,0.0309722,0.249366,0.680843,2.426e-05,0.541378,3.10456e-06,0.0243913,9.01369e-08,0.00252383,0.00389983,0.000636369,0.311289,0.318577,0.4488,0.389888,0.603509,0.161355,0.553178,0.246387,0.224252,0.0603905,0.155054,0.466978,0.518234,0.257848,0.353942,0.192234,0.427276,0.747776,0.131598,0.283682,0.424668,0.111989,0.797471,0.0587897,0.702164,0.477016,0.263776,0.498956,0.00120325,0.55798,0.708394,2.10026e-13,0.723248,0.34194,0.592696,0.592314,0.644904,0.0254154,0.763919,0.317485,0.633504,0.220564,0.0413332,0.262394,0.307462,0.135076,0.469588,0.0251525,0.274593,0.490712,0.183857,0.709432,0.00208999,0.531474,0.720644,0.0101223,0.00736363,0.361524,0.31558,0.412744,0.54408,0.62698,0.513592,0.415367,0.00780578,0.0239664,0.36864,0.538745,0.456862,0.453004,0.0289228,0.557093,0.693441,0.382214,0.553161,0.639572,0.68995,0.339393,0.332211,0.306231,0.298354,0.646049,0.453817,0.457741,0.641611,0.426239,0.748909,0.656093,0.572661,0.100067,0.534679,0.41502,0.55475,0.66153,0.170461,0.499347,0.00056654,0.206772,0.557732,0.490527,0.714189,0.44799,0.236683,0.318338,0.276338,0.126433,0.417412,0.318174,0.0555558,0.295666,0.393022,0.293641,0.116969,0.401231,0.255983,0.297663,0.256708,0.338258,0.322052,0.145568,0.153833,0.261242,0.38389,0.54721,0.388459,0.321362,0.627637,0.280757,0.301366,0.340343,0.343265,0.501812,0.462092,0.336254,0.308589,0.291523,0.19697,0.309816,0.0537285,0.15063,0.198077,0.281455,0.348739,0.419895,0.138495,0.208834,0.32256,0.377566,0.342366,0.109684,0.322704,0.403482,0.181288,0.230841,0.352328,0.255358,0.351665,0.265112,0.0633313,0.10772,0.0854747,0.0747609,0.406458,0.312881,0.512825,0.244656,0.192188,0.158985,0.174153,0.0972854,0.333309,0.249919,0.339517,0.303699,0.198326,0.394084,0.458518,0.282501,0.252005,0.0889203,0.238377,0.334983,0.197875,0.287909,0.289389,0.117618,0.392533,0.396962,0.316002,0.330317,0.321404,0.225079,0.300542,0.379651,0.185715,0.345505,0.375521,0.271405,0.311201,0.221943,0.306427,0.367733,0.246925,0.208775,0.0886961,0.343014,0.270094,0.276922,0.156279,0.313647,0.461742,0.422872,0.336468,0.13327,0.313545,0.17149,0.0877361,0.0880065,0.238969,0.126615,0.0669467,0.0879453,0.474066,0.396935,0.326779,0.292869,0.358198,0.29552,0.131776,0.158116,0.104606,0.194814,0.104167,0.168186,0.108081,0.123829,0.205215,0.175247,0.0724304,0.109077,0.144842,0.0604892,0.214671,0.316879,0.442567,0.430541,0.508546,0.224871,0.398887,0.389061,0.310732,0.349611,0.445995,0.385709,0.278202,0.426488,0.400591,0.209809,0.253154,0.319519,0.309489,0.430805,0.362154,0.480785,0.185476,0.336314,0.344469,0.184651,0.303359,0.297596,0.42392,0.425912,0.380826,0.259046,0.345068,0.151046,0.483953,0.347171,0.321735,0.15463,0.13907,0.470121,0.269432,0.250466,0.409882,0.115686,0.408975,0.162633,0.342661,0.27567,0.248127,0.33299,0.384731,0.319112,0.526476
|tfbs_overrepresentation=0.23317,0.0958562,0.877965,0.078254,0.310241,0.110737,0.0706464,0.5903,0.0539364,0.0424746,0.221396,0.346629,0.294377,0.201017,0.235304,0.101024,0.223746,0.158251,0.0865245,0.173528,0.29418,0.211047,0.13286,0.153106,0.0683222,0.332688,0.324018,0.146582,0.227906,0.150721,0.31768,0.182756,0.0298713,0.322378,0.108398,0.136785,1.49365e-07,0.070583,0.192426,0.108683,0.155571,0.0406818,0.222325,0.287476,0.193292,0.0596699,0.0625547,0.28382,0.178503,7.54537e-05,0.243359,0.0886583,0.114185,0.150136,0.308837,0.0632035,0.172598,0.328738,0.127101,0.169687,0.0485674,0.236408,0.174369,0.123348,0.0892839,0.0827236,0.515105,0.0980005,0.139298,0.262613,0.547889,0.110232,0.143944,0.190944,0.012429,0.0283664,0.155593,0.0717582,0.0613084,0.0120583,0.154245,0.348799,0.0698251,0.183986,0.436695,0.38341,0.104918,0.323505,0.021784,0.102375,0.138802,0.0812726,0.153861,0.0777027,0.138224,0.184264,0.182508,0.242703,0.149747,0.413729,0.0939617,0.416542,0.00228548,0.0610111,0.337778,0.0672793,0.109136,0.497282,0.228612,0.407248,0.285407,0.0560173,0.23661,0.0293017,0.162943,0.0556189,0.0336673,0.0926302,0.220791,0.13579,0.262107,0.331577,0.222452,0.138843,0.164723,0.277102,0.146529,0.0245339,0.136609,0.214614,0.0973103,0.121587,0.0935301,0.0376876,0.200735,0.173595,0.105753,0.0905147,0.0544577,0.0065834,0.037671,0.203496,0.316207,0.246229,0.194394,0.112838,0.159217,0.1364,0.0640569,0.193163,0.311509,0.227801,0.282656,0.0439093,0.070163,0.188135,0.121467,0.350865,0.0846706,0.0555742,0.349932,0.153706,0.186743,0.23397,0.412853,0.183121,0.065826,0.203135,0.0663482,0.463935,0.281162,0.218835,0.646289,0.0885874,0.129639,0.145577,0.22277,0.284267,0.27935,0.0586816,0.250461,0.195671,0.0452583,0.185103,0.11983,0.190123,0.286036,0.0660586,0.134265,0.272191,0.172119,0.292239,0.00147953,0.351465,0.18064,0.0772176,0.126988,0.0984435,0.110187,0.176022,0.144361,0.0986228,0.0508565,0.0989516,0.21691,0.393782,0.412989,0.240045,0.319604,0.279218,0.0752697,0.167805,0.193654,0.180992,0.464566,0.265567,0.258402,0.162511,0.102771,0.165687,0.225173,0.540012,0.246322,0.253699,0.120044,0.201982,0.220536,0.139142,0.0987108,0.09782,0.410084,0.554981,0.0687568,0.124225,0.1547,0.150448,0.0774663,0.398789,0.257365,0.331711,0.285222,0.511,0.158559,0.134615,0.186192,0.217494,0.132125,0.179065,0.540443,0.187334,0.250769,0.289141,0.289982,0.157983,0.158078,0.251693,0.172268,0.313249,0.113261,0.0601691,0.101058,0.274448,0.25718,0.204241,0.0568578,0.131428,0.131579,0.148683,0.188945,0.122666,0.419402,0.103245,0.387442,0.0778535,0.14011,0.0626022,0.2074,0.769028,0.0603274,0.252309,0.50169,0.748392,0.784283,9.13083e-10,0.493893,0.808889,0.396701,0.258806,0.541514,0.127393,0.675971,0.487888,0.568246,0.486439,0.720623,0.796904,0.410803,0.43779,0.579996,0.0108647,0.766049,0.447317,0.292173,0.528152,0.284119,0.601223,0.176507,0.488132,0.336705,0.604733,0.545464,0.645432,0.00212057,0.714193,0.706516,0.537972,0.591562,0.302575,0.385794,0.417358,0.450485,0.665656,0.470142,0.344006,0.688397,0.785741,0.426591,0.467379,0.762263,0.437202,0.628658,0.419367,0.592924,0.438692,0.660225,0.0739852,0.541742,0.762222,0.790857,0.285074,0.018127,1.81112e-09,0.0297733,0.415372,0.362164,0.289863,0.507647,0.137929,0.409489,0.80581,0.688223,0.699429,0.707862,0.379008,0.423719,0.655494,0.256985,0.109234,0.11883,0.288602,0.779806,0.0115589,0.766165,0.588284,0.843506,0.147327,0.737273,0.628596,0.337121,0.464864,0.861932,0.0740433,0.121457,0.351733,0.00220507,0.773103,0.687274,0.441154,0.503865,0.660832,0.43388,0.483295,0.000836086,0.418989,0.935814,0.239606,0.350461,0.495024,0.307173,0.246694,0.407051,0.598317,0.300406,0.597346,0.702113,3.77769e-05,0.493489,0.229501,0.230597,0.195392,0.544572,0.627794,0.641833,0.383956,0.241286,0.0764074,0.217887,0.393543,0.214395,0.158849,0.732038,0.439833,0.427746,0.504398,0.456725,0.455709,0.784142,0.688249,0.349388,0.427794,0.398041,0.524026,0.347879,0.0576919,0.593219,0.529253,0.64728,0.031869,0.319495,0.00178136,0.827435,0.616333,0.407113,0.498776,0.387091,0.423517,0.224914,0.636791,0.0359783,0.251608,0.076676,0.539805,0.356278,0.295455,0.144104,0.0972855,0.710825,0.80526,0.508875,0.725283,0.512109,0.658411,0.578577,0.818493,0.809533,0.469232,0.113555,0.0910724,0.299839,0.126587,0.0940929,0.22877,0.343849,0.315824,0.622796,0.0751409,0.0498759,0.179502,0.43406,0.0715061,0.452515,0.201779,0.214491,0.171725,0.412647,0.102448,0.000184904,0.029672,0.453305,0.421335,0.561724,0.0762646,0.266371,0.183582,0.168118,0.145381,0.140277,0.251925,0.172066,0.0720324,0.00647589,0.19738,0.205854,0.32541,0.301472,0.507714,0.0818982,0.134306,0.108669,0.284804,0.0169728,0.338195,0.146979,0.304235,0.210475,0.00544513,0.0790025,0.310539,0.0119441,0.203728,0.275452,0.288155,0.265827,0.0105597,0.153627,0.0186891,0.342497,0.171961,0.415228,0.00800917,0.272406,0.223952,0.327153,0.0496113,0.20949,0.0730994,0.0857377,0.323267,0.24204,0.129414,0.157037,0.252398,0.197279,0.146467,0.0912686,0.425114,0.123863,0.218241,0.0242146,0.10708,0.327369,0.339826,0.12998,0.123097,0.254847,0.300809,0.0898207,0.126545,0.0918749,0.0686325,0.0569043,0.0639461,0.387306,0.267408,0.312064,0.080156,0.274185,0.53753,0.0545112,0.00618348,0.33844,0.0649137,0.0974216,0.595767,0.195675,0.174786,0.176557,0.0917509,0.0472148,1.41908e-06,0.229138,0.0639045,0.141461,0.0900204,0.228387,0.385962,0.334921,0.296227,0.208788,0.566117,0.36304,0.430936,0.123626,0.270619,0.132705,0.285556,0.0052066,0.233835,0.224471,0.262929,0.223204,0.143824,0.460679,0.431098,0.0775891,0.153079,9.78096e-07,0.211515,0.125701,0.175283,0.204954,0.209341,3.47252e-11,0.629422,0.084895,0.160115,0.0819954,0.10091,0.122658,0.151161,0.228398,0.056055,0.120552,0.41771,4.3357e-06,0.830533,0.335207,0.434016,0.190688,0.299739,0.278645,1.62728e-07,0.0940982,0.0780533,0.202744,0.0993772,0.274769,0.448923,0.11602,0.344528,0.436413,0.0585992,0.20045,0.274438,4.10608e-10,4.85072e-12,0.319826,0.336512,0.173868,0.109708,0.174594,0.0809806,0.154589,0.318794,0.122767,0.0749261,0.176858,0.114361,0.347759,0.242462,0.0620267,0.211111,0.0738743,0.0882327,0.183058,0.150073,0.270522,0.16872,0.341388,0.0934526,0.359135,0.123404,0.00268781,0.240825,0.3033,0.00849634,0.163542,0.483244,0.27134,0.500871,0.239667,0.10226,0.29809,0.235147,3.11183e-05,0.245965,0.116923,0.148426,0.0983658,0.228743,0.238223,0.156976,0.244789,0.267391,0.301441,0.21807,0.350528,0.382904,0.432408,0.190404,0.135865,0.488841,0.18137,0.180609,0.291283,0.273972,0.153023,0.400137,0.37958,0.22307,0.160699,5.89267e-08,0.166736,0.181253,0.0422294,0.263877,0.146486,0.769574,0.262486,0.294204,0.131936,0.288826,0.246621,0.463617,0.0333587,0.0965376,0.0822869,0.0432352,0.336564,0.35463,0.581771,0.0805078,0.0594155,0.587524,0.208795,0.0713793,0.212621,4.91683e-06,0.53612,0.629713,0.581874,0.355154,0.377285,0.619037,0.537088,0.603804,0.629445,0.306963,0.569605,0.526495,0.580285,0.550495,0.424482,0.820986,0.610475,0.881697,0.561689,0.672416,0.685628,0.623136,0.708698,2.6218e-11,4.46467e-09,0.349068,0.70429,0.476117,0.557035,0.427789,0.689998,0.0119463,0.0238314,0.433702,0.258394,0.644878,0.432123,0.759415,0.661773,0.494975,0.0903515,0.392155,0.626931,0.371758,2.4212e-06,0.562417,0.0738477,0.128028,0.254547,0.0309722,0.249366,0.680843,2.426e-05,0.541378,3.10456e-06,0.0243913,9.01369e-08,0.00252383,0.00389983,0.000636369,0.311289,0.318577,0.4488,0.389888,0.603509,0.161355,0.553178,0.246387,0.224252,0.0603905,0.155054,0.466978,0.518234,0.257848,0.353942,0.192234,0.427276,0.747776,0.131598,0.283682,0.424668,0.111989,0.797471,0.0587897,0.702164,0.477016,0.263776,0.498956,0.00120325,0.55798,0.708394,2.10026e-13,0.723248,0.34194,0.592696,0.592314,0.644904,0.0254154,0.763919,0.317485,0.633504,0.220564,0.0413332,0.262394,0.307462,0.135076,0.469588,0.0251525,0.274593,0.490712,0.183857,0.709432,0.00208999,0.531474,0.720644,0.0101223,0.00736363,0.361524,0.31558,0.412744,0.54408,0.62698,0.513592,0.415367,0.00780578,0.0239664,0.36864,0.538745,0.456862,0.453004,0.0289228,0.557093,0.693441,0.382214,0.553161,0.639572,0.68995,0.339393,0.332211,0.306231,0.298354,0.646049,0.453817,0.457741,0.641611,0.426239,0.748909,0.656093,0.572661,0.100067,0.534679,0.41502,0.55475,0.66153,0.170461,0.499347,0.00056654,0.206772,0.557732,0.490527,0.714189,0.44799,0.236683,0.318338,0.276338,0.126433,0.417412,0.318174,0.0555558,0.295666,0.393022,0.293641,0.116969,0.401231,0.255983,0.297663,0.256708,0.338258,0.322052,0.145568,0.153833,0.261242,0.38389,0.54721,0.388459,0.321362,0.627637,0.280757,0.301366,0.340343,0.343265,0.501812,0.462092,0.336254,0.308589,0.291523,0.19697,0.309816,0.0537285,0.15063,0.198077,0.281455,0.348739,0.419895,0.138495,0.208834,0.32256,0.377566,0.342366,0.109684,0.322704,0.403482,0.181288,0.230841,0.352328,0.255358,0.351665,0.265112,0.0633313,0.10772,0.0854747,0.0747609,0.406458,0.312881,0.512825,0.244656,0.192188,0.158985,0.174153,0.0972854,0.333309,0.249919,0.339517,0.303699,0.198326,0.394084,0.458518,0.282501,0.252005,0.0889203,0.238377,0.334983,0.197875,0.287909,0.289389,0.117618,0.392533,0.396962,0.316002,0.330317,0.321404,0.225079,0.300542,0.379651,0.185715,0.345505,0.375521,0.271405,0.311201,0.221943,0.306427,0.367733,0.246925,0.208775,0.0886961,0.343014,0.270094,0.276922,0.156279,0.313647,0.461742,0.422872,0.336468,0.13327,0.313545,0.17149,0.0877361,0.0880065,0.238969,0.126615,0.0669467,0.0879453,0.474066,0.396935,0.326779,0.292869,0.358198,0.29552,0.131776,0.158116,0.104606,0.194814,0.104167,0.168186,0.108081,0.123829,0.205215,0.175247,0.0724304,0.109077,0.144842,0.0604892,0.214671,0.316879,0.442567,0.430541,0.508546,0.224871,0.398887,0.389061,0.310732,0.349611,0.445995,0.385709,0.278202,0.426488,0.400591,0.209809,0.253154,0.319519,0.309489,0.430805,0.362154,0.480785,0.185476,0.336314,0.344469,0.184651,0.303359,0.297596,0.42392,0.425912,0.380826,0.259046,0.345068,0.151046,0.483953,0.347171,0.321735,0.15463,0.13907,0.470121,0.269432,0.250466,0.409882,0.115686,0.408975,0.162633,0.342661,0.27567,0.248127,0.33299,0.384731,0.319112,0.526476
}}
}}

Revision as of 11:51, 5 September 2012


Full id: C1899_Mesenchymal_Fibroblast_Urothelial_Smooth_mucinous_Pericytes_Keratocytes



Phase1 CAGE Peaks

Hg19::chr2:241375069..241375136,+p1@GPC1
Hg19::chr2:241375176..241375187,+p5@GPC1
Hg19::chr2:241375200..241375214,+p4@GPC1
Hg19::chr2:241375233..241375256,+p3@GPC1
Hg19::chr2:241375264..241375280,+p7@GPC1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data


No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
organism subdivision1.13e-24365
multi-tissue structure1.08e-18347
trunk mesenchyme1.57e-15143
cell layer6.44e-15312
surface structure6.68e-1595
multilaminar epithelium8.14e-1582
somite1.67e-1483
paraxial mesoderm1.67e-1483
presomitic mesoderm1.67e-1483
presumptive segmental plate1.67e-1483
trunk paraxial mesoderm1.67e-1483
presumptive paraxial mesoderm1.67e-1483
epithelium2.31e-14309
trunk2.52e-14216
multi-cellular organism5.13e-14659
mesenchyme3.63e-13238
entire embryonic mesenchyme3.63e-13238
anatomical system2.32e-12625
anatomical group3.73e-12626
dermomyotome5.69e-1270
skeletal muscle tissue3.62e-1161
striated muscle tissue3.62e-1161
myotome3.62e-1161
muscle tissue1.67e-1063
musculature1.67e-1063
musculature of body1.67e-1063
organ part4.80e-09219
anatomical cluster6.28e-09286
unilaminar epithelium1.51e-08138
embryonic structure3.67e-08605
developing anatomical structure3.67e-08605
germ layer3.89e-08604
embryonic tissue3.89e-08604
presumptive structure3.89e-08604
epiblast (generic)3.89e-08604
primary circulatory organ5.84e-0827
embryo1.03e-07612
anatomical conduit1.20e-07241
integument3.68e-0745
integumental system3.68e-0745
splanchnic layer of lateral plate mesoderm4.21e-0784
subdivision of head4.61e-0748
epithelial tube4.85e-07118
organ5.49e-07511
compound organ8.34e-0769


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data


(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

TF#promotersEnrichmentp-valueq-value
CTCFL#140690519.74647435897443.32745051287657e-071.65878569982967e-05
E2F1#186954.907389214879320.0003512818099256460.0035320613215389
E2F6#187655.017155731697390.0003144978599297790.0032303149088519



Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data


This analysis result is provided for C0 - C305 clusters.