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== ENCODE TF ChIP-seq peak enrichment analysis == | |||
{{#info: Method: For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <nowiki><=</nowiki> 0.05) after Benjamini-Hochberg correction were retained. <br>Analyst: Erick Arner}} (#promoters = Number of promoters in cluster that have ChIP signal of the TF) | |||
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<table id="tf_chipseq_enrich"><html><thead></html><tr><th>TF</th><th>#promoters</th><th>Enrichment</th><th>p-value</th><th>q-value</th></tr><html></thead><tbody></html> | <table id="tf_chipseq_enrich"><html><thead></html><tr><th>TF</th><th>#promoters</th><th>Enrichment</th><th>p-value</th><th>q-value</th></tr><html></thead><tbody></html> | ||
{{#arraymap:IRF4#3662;4:10.95725634:0.000261492:0.002802174!MXI1#4601;4:4.980785814:0.005094415:0.023698528!NFKB1#4790;8:5.488063424:1.21E-06:4.91E-05|!|$ | {{#arraymap:IRF4#3662;4:10.95725634:0.000261492:0.002802174!MXI1#4601;4:4.980785814:0.005094415:0.023698528!NFKB1#4790;8:5.488063424:1.21E-06:4.91E-05|!|$ | ||
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Revision as of 11:31, 5 September 2012
ENCODE TF ChIP-seq peak enrichment analysis
Method: For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br>Analyst: Erick Arner (#promoters = Number of promoters in cluster that have ChIP signal of the TF)
| TF | #promoters | Enrichment | p-value | q-value |
|---|---|---|---|---|
| IRF4#3662 | 4 | 10.95725634 | 0.000261492 | 0.002802174 |
| MXI1#4601 | 4 | 4.980785814 | 0.005094415 | 0.023698528 |
| NFKB1#4790 | 8 | 5.488063424 | 1.21E-06 | 4.91E-05 |
