FFCP PHASE1:Hg19::chr3:181429704..181429722,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 7: | Line 7: | ||
|description=CAGE_peak_1_at_SOX2_5end | |description=CAGE_peak_1_at_SOX2_5end | ||
|id=chr3:181429704..181429722,+ | |id=chr3:181429704..181429722,+ | ||
|ontology_enrichment_celltype=CL:0002319 | |ontology_enrichment_celltype=CL:0002319;5.45e-17;25!CL:0000095;8.20e-09;17!CL:0000540;1.35e-08;6!CL:0000404;1.35e-08;6!CL:0000128;1.61e-08;7!CL:0000126;1.61e-08;7!CL:0000127;1.61e-08;7!CL:0002322;1.62e-07;5!CL:0000243;5.11e-07;15!CL:0000125;5.11e-07;15 | ||
|ontology_enrichment_development=UBERON:0006601;6.77e-14;82!CL:0000031;1.35e-08;6!CL:0000339;5.11e-07;15!CL:0000133;8.13e-07;59 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON: | |ontology_enrichment_uberon=UBERON:0000073;1.79e-29;53!UBERON:0002616;1.79e-29;53!UBERON:0001893;3.75e-29;34!UBERON:0003528;6.81e-29;34!UBERON:0002020;6.81e-29;34!UBERON:0002791;1.09e-28;32!UBERON:0001869;1.41e-28;32!UBERON:0002780;1.44e-28;41!UBERON:0001890;1.44e-28;41!UBERON:0000956;9.61e-25;25!UBERON:0000203;9.61e-25;25!UBERON:0001017;1.63e-22;75!UBERON:0000955;3.05e-22;68!UBERON:0002619;3.33e-21;22!UBERON:0001016;7.81e-21;83!UBERON:0001950;4.93e-19;20!UBERON:0004732;6.89e-13;13!UBERON:0004733;2.71e-12;12!UBERON:0002028;2.71e-12;12!UBERON:0002420;1.76e-10;9!UBERON:0007245;1.76e-10;9!UBERON:0010009;1.76e-10;9!UBERON:0010011;1.76e-10;9!UBERON:0000454;1.76e-10;9!UBERON:0000922;2.14e-10;49!UBERON:0000125;2.79e-10;9!UBERON:0002308;2.79e-10;9!UBERON:0002680;1.99e-09;9!UBERON:0001895;1.99e-09;9!UBERON:0011216;2.91e-09;132!UBERON:0007023;2.29e-08;114!UBERON:0009663;2.33e-08;7!UBERON:0001894;1.57e-07;7!UBERON:0000200;3.31e-07;6!UBERON:0002298;3.50e-07;6!UBERON:0004121;5.28e-07;165!UBERON:0000349;7.83e-07;5!UBERON:0002037;9.99e-07;6 | ||
|phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,0.245733936501509,0.697801167972428,0,0,0,0,0,0,0,0,70.3021241618459,20.196068433181,72.0945859399602,215.821934296817,134.684434271718,116.126941625193,0,0.0821005894499457,0,0,0,2.16742572642506,2.75826367343678,3.0120591877825,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.42159801053347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,29.8730022238454,4.65631734671384,5.44575671297381,13.0979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0.0892997282840798,0,0,0,0,0.732806975721629,0,0,7.41359888642308,0,0,0,0,0,0,0,0.24666754841716,0,0,0,12.2599516392394,3.45705554687999,0.468642863667593,0,0,0,0.587172493218824,0.647491777472526,0.98315564691574,0,0,0.103325781175765,0,0,0,0,0,0,0.277064115484183,0,0,0,0,0.179389635688862,0.427114777637135,0,0,0,0,0,0,0,0,0,0,0,0,0,0.57978255948989,0.818238361772504,0.286804595389004,133.317260799648,197.071765494049,136.411688928815,102.10613919014,161.233023709527,171.174381406564,0,3.21620469096443,0,2.3218396401599,4.33127689001751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18157981336281,0,3.68965315629341,1.71567810298526,0.109750285408626,0,0,4.35165692245089,0,0,1.44331342025273,170.881416933263,0.587043471179108,0,0,0,5.53143078571493,4.29243081047436,0,0,0,0,0.335964256397719,0,0,0,0,0,0,0,0,0,0,0,0,3.4214489204541,0.308482478109971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,216.234525213316,87.1937020846065,119.086477167765,105.702763425974,131.415382840552,0,0,0,0,0.500170521059677,0,0,0,0,0,0,0,3.10419213877515,0,0,0,0.587403472388222,1.02943027143257,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.86750238693191,1.60405176242628,2.30202472339741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.75169719801128,0,0,0,0,0,0,0,0,0,0,0,0,0,0.826424576804891,0.768760269460425,0.765676274967505,2.8324178639554,0,0,0,0.616067160352178,0,0,0,0,0,0,0.762520775695299,0,0,0,0,0,0,0,0,0,0,0,0.243713489631284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15466535270614,1.34060455107157,0,1.7887322147588,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.73254089635947,81.9183521809216,0,0.284136146806413,0,0.593929361665277,0,74.5610735824723,129.275193681261,0,0,0,15.9398390600856,0.276283915531148,0.251932747854276,21.5786920079547,0,0,0,0,0,1.1837208676432,0,0,66.8839594805701,59.5571190199085,63.8764153603821,0.520855522170466,0,0,52.3449862113298,7.62760950878299,3.30942754475111,19.9951156480049,56.8628996097346,0,78.8309833374317,99.2508689887107,44.2487035319541,64.3571292799727,19.8016904698877,56.3820470685709,0,6.41349223681575,4.15531395920504,0,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0,0,9.75336192894192,0,0,2.4768118060935,3.05515072466813,22.2390846510466,18.1638990251359,20.8843899010911,93.6201737101604,0.802577647298789,76.1359448607352,0.182454789215666,36.0022898835045,0,0,0,83.2517911634933,0.884612114798832,3.15679180770434,4.66596861287612,0,0.661983911750998,0,0,1.42304773014896,0.277349346026277,0,0,0,0.17472666824203,17.8865473770481,0,0,0,23.9562870726396,0,28.021611856786,0,0,49.8255964172765,6.6487470129833,0,0.213452994739353,0,2.59362750877391,50.5106389091688,33.804214578807,0.576219191952599,0,0,3.80531777006119,3.55649677461933,0,0,43.2302607871048,74.2027153594602,0,0,0,0,0,0.717873024576814,21.365653053392,0,0.223171457441873,0.403100834920358,0,0,0,0,0,1.47641222272123,0.0846733320657845,74.7515908420745,166.985375892792,107.865362620028,139.877607019387,185.701831099046,0,0,53.9456063123259,2.34804281319486,0.315222829196793,0.104909176269996,0,0,0.383830394638891,0.714695326373367,0,0,0,0,0,0,0,0,0,0,0,57.53091558089,80.2651892578128,0,0,3.20362237703084,5.97376359378731,4.55662960881915,0,0.592834895693833,0,7.66009509324218,0,0,0,0,90.9343217288856,55.8222953379201,64.4298678682365,90.2626610393864,61.3547839388376,90.2962479509978,55.700473438421,0,11.4981975325138,0.151649117541648,0.570930667089935,0,79.6169339871699,138.254661294727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,84.8906797971627,0,0,0,0,0,6.12805157740018,0.59996218756479,0,0,0,0.184105950251841,1.39879507719444,9.33115890049459,0,0,155.693282437337,0.54604819096007,16.9732529954025,21.47006693027,82.0454759394595,31.8427603244749,0,0,0.80057074828547,0,0,59.540491664418,48.1768359506989,85.0848468774616,47.7921128680959,49.9101958519002,45.4363148689912,70.4033814954871,8.56616521554926,40.8294508964267,80.1014421531157,5.68628655417205,0.231051332300676,0,0.690359926060101,0,0.902523940191087,0,0,0,0,0,45.6554072020348,57.7997792974247,83.9148393794807,52.5717066507488,74.3885740264779,0.548257766857182,3.96968942711435,0,25.6802479555587,12.8568440610789,18.8318884442541,24.2786241694653,18.2129753081038,0,0.115233987555779,0,28.0714997194315,45.6463048526173,0,0,2.27629969266491,77.1437546487569,0,2.73947616152849,0,0,8.36275566866879,0,0,0.695433089210318,0,0,0,0,5.59295566466361,10.4132160642898,10.1403951663398,0,0,0,0,0.111855431797792,12.9558308372121,0,0,0,0,1.45713297917742,260.140683369861,0,0.118920090777569,114.979111515661,0,42.8734475729353,1.85217979459067,0.437119121007915,110.054247348596,0.490296643507811,12.7265335434878,68.9042719573458,74.5586464820986,98.0561287993488,0,0,0.193373663920732,0.0999411559249289,11.6060060093677,0,2.00603416722921,0.730336388246517,0.917458566809082,64.2161332518502,9.93960841817063,47.1860941924948,92.9426970425004,2.1161073620616,0,0,0,200.22611621327,154.829315472557,0,94.747622830301,168.614182722569,79.0296135999666,201.067446512485,2.34913964476542,2.67964130156179,80.4294356275016,97.6407480936291,16.2057826244745,8.57031953269465,0.452122368852043,0.744896571550295,0,0.0636471582781649,0,10.4504038990541,13.6893320434112,18.1850543139386,41.2402681007889,23.951545671313,19.6181877352449,0,0,0,9.38563769613817,0,1.62758471326295,1.99727032255654,0.402547587182052,0 | |phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,0.245733936501509,0.697801167972428,0,0,0,0,0,0,0,0,70.3021241618459,20.196068433181,72.0945859399602,215.821934296817,134.684434271718,116.126941625193,0,0.0821005894499457,0,0,0,2.16742572642506,2.75826367343678,3.0120591877825,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.42159801053347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,29.8730022238454,4.65631734671384,5.44575671297381,13.0979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0.0892997282840798,0,0,0,0,0.732806975721629,0,0,7.41359888642308,0,0,0,0,0,0,0,0.24666754841716,0,0,0,12.2599516392394,3.45705554687999,0.468642863667593,0,0,0,0.587172493218824,0.647491777472526,0.98315564691574,0,0,0.103325781175765,0,0,0,0,0,0,0.277064115484183,0,0,0,0,0.179389635688862,0.427114777637135,0,0,0,0,0,0,0,0,0,0,0,0,0,0.57978255948989,0.818238361772504,0.286804595389004,133.317260799648,197.071765494049,136.411688928815,102.10613919014,161.233023709527,171.174381406564,0,3.21620469096443,0,2.3218396401599,4.33127689001751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18157981336281,0,3.68965315629341,1.71567810298526,0.109750285408626,0,0,4.35165692245089,0,0,1.44331342025273,170.881416933263,0.587043471179108,0,0,0,5.53143078571493,4.29243081047436,0,0,0,0,0.335964256397719,0,0,0,0,0,0,0,0,0,0,0,0,3.4214489204541,0.308482478109971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,216.234525213316,87.1937020846065,119.086477167765,105.702763425974,131.415382840552,0,0,0,0,0.500170521059677,0,0,0,0,0,0,0,3.10419213877515,0,0,0,0.587403472388222,1.02943027143257,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.86750238693191,1.60405176242628,2.30202472339741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.75169719801128,0,0,0,0,0,0,0,0,0,0,0,0,0,0.826424576804891,0.768760269460425,0.765676274967505,2.8324178639554,0,0,0,0.616067160352178,0,0,0,0,0,0,0.762520775695299,0,0,0,0,0,0,0,0,0,0,0,0.243713489631284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15466535270614,1.34060455107157,0,1.7887322147588,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.73254089635947,81.9183521809216,0,0.284136146806413,0,0.593929361665277,0,74.5610735824723,129.275193681261,0,0,0,15.9398390600856,0.276283915531148,0.251932747854276,21.5786920079547,0,0,0,0,0,1.1837208676432,0,0,66.8839594805701,59.5571190199085,63.8764153603821,0.520855522170466,0,0,52.3449862113298,7.62760950878299,3.30942754475111,19.9951156480049,56.8628996097346,0,78.8309833374317,99.2508689887107,44.2487035319541,64.3571292799727,19.8016904698877,56.3820470685709,0,6.41349223681575,4.15531395920504,0,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0,0,9.75336192894192,0,0,2.4768118060935,3.05515072466813,22.2390846510466,18.1638990251359,20.8843899010911,93.6201737101604,0.802577647298789,76.1359448607352,0.182454789215666,36.0022898835045,0,0,0,83.2517911634933,0.884612114798832,3.15679180770434,4.66596861287612,0,0.661983911750998,0,0,1.42304773014896,0.277349346026277,0,0,0,0.17472666824203,17.8865473770481,0,0,0,23.9562870726396,0,28.021611856786,0,0,49.8255964172765,6.6487470129833,0,0.213452994739353,0,2.59362750877391,50.5106389091688,33.804214578807,0.576219191952599,0,0,3.80531777006119,3.55649677461933,0,0,43.2302607871048,74.2027153594602,0,0,0,0,0,0.717873024576814,21.365653053392,0,0.223171457441873,0.403100834920358,0,0,0,0,0,1.47641222272123,0.0846733320657845,74.7515908420745,166.985375892792,107.865362620028,139.877607019387,185.701831099046,0,0,53.9456063123259,2.34804281319486,0.315222829196793,0.104909176269996,0,0,0.383830394638891,0.714695326373367,0,0,0,0,0,0,0,0,0,0,0,57.53091558089,80.2651892578128,0,0,3.20362237703084,5.97376359378731,4.55662960881915,0,0.592834895693833,0,7.66009509324218,0,0,0,0,90.9343217288856,55.8222953379201,64.4298678682365,90.2626610393864,61.3547839388376,90.2962479509978,55.700473438421,0,11.4981975325138,0.151649117541648,0.570930667089935,0,79.6169339871699,138.254661294727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,84.8906797971627,0,0,0,0,0,6.12805157740018,0.59996218756479,0,0,0,0.184105950251841,1.39879507719444,9.33115890049459,0,0,155.693282437337,0.54604819096007,16.9732529954025,21.47006693027,82.0454759394595,31.8427603244749,0,0,0.80057074828547,0,0,59.540491664418,48.1768359506989,85.0848468774616,47.7921128680959,49.9101958519002,45.4363148689912,70.4033814954871,8.56616521554926,40.8294508964267,80.1014421531157,5.68628655417205,0.231051332300676,0,0.690359926060101,0,0.902523940191087,0,0,0,0,0,45.6554072020348,57.7997792974247,83.9148393794807,52.5717066507488,74.3885740264779,0.548257766857182,3.96968942711435,0,25.6802479555587,12.8568440610789,18.8318884442541,24.2786241694653,18.2129753081038,0,0.115233987555779,0,28.0714997194315,45.6463048526173,0,0,2.27629969266491,77.1437546487569,0,2.73947616152849,0,0,8.36275566866879,0,0,0.695433089210318,0,0,0,0,5.59295566466361,10.4132160642898,10.1403951663398,0,0,0,0,0.111855431797792,12.9558308372121,0,0,0,0,1.45713297917742,260.140683369861,0,0.118920090777569,114.979111515661,0,42.8734475729353,1.85217979459067,0.437119121007915,110.054247348596,0.490296643507811,12.7265335434878,68.9042719573458,74.5586464820986,98.0561287993488,0,0,0.193373663920732,0.0999411559249289,11.6060060093677,0,2.00603416722921,0.730336388246517,0.917458566809082,64.2161332518502,9.93960841817063,47.1860941924948,92.9426970425004,2.1161073620616,0,0,0,200.22611621327,154.829315472557,0,94.747622830301,168.614182722569,79.0296135999666,201.067446512485,2.34913964476542,2.67964130156179,80.4294356275016,97.6407480936291,16.2057826244745,8.57031953269465,0.452122368852043,0.744896571550295,0,0.0636471582781649,0,10.4504038990541,13.6893320434112,18.1850543139386,41.2402681007889,23.951545671313,19.6181877352449,0,0,0,9.38563769613817,0,1.62758471326295,1.99727032255654,0.402547587182052,0 | ||
|short_description=p1@SOX2 | |short_description=p1@SOX2 | ||
}} | }} |
Revision as of 23:20, 31 July 2012
Short description: | p1@SOX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_SOX2_5end |
Coexpression cluster: | C1056_small_Neural_Astrocyte_teratocarcinoma_H9_hippocampus_testicular |
Association with transcript: | 0bp_to_ENST00000325404, ENST00000431565, NM_003106, uc003fkx.2_5end |
EntrezGene: | SOX2 |
HGNC: | 11195 |
UniProt: | P48431 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|
Ontology term | p-value | n |
---|
Ontology term | p-value | n |
---|
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.