UBERON:0007806: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 15: | Line 15: | ||
|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from=UBERON:0005728 | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
Revision as of 13:43, 27 June 2012
| Name: | connecting stalk | ||
|---|---|---|---|
| Definition: | "A bridge of mesoderm connecting the caudal end of the young embryo with the trophoblastic tissues; the precursor of the umbilical cord." [Medical_Dictionary:http://medical-dictionary.thefreedictionary.com/] | ||
| Xrefs: |
| ||
| Comments: | todo - this is currently defined as a bridge of mesoderm, but in EHDAA2 is extraembryonic structure split into mesoderm and blood vessels |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000478(extraembryonic structure),UBERON:0004120(mesoderm-derived structure) |
|---|---|
| develops_from: | UBERON:0005728(extraembryonic mesoderm) |
Children
| develops from: | UBERON:0002331 (umbilical cord) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007806 (connecting stalk), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.79e-79 | FFCP PHASE2:Hg19::chr10:120921270..120921282,-#_14bb33615039afdf9052037a7d91f708 | p@chr10:120921270..120921282, - |
| 5.79e-79 | FFCP PHASE2:Hg19::chr7:135931480..135931486,+#_14bb33615039afdf9052037a7d91f708 | p@chr7:135931480..135931486, + |
| 5.79e-79 | FFCP PHASE1:Hg19::chr10:120921270..120921282,-#_14bb33615039afdf9052037a7d91f708 | p@chr10:120921270..120921282, - |
| 5.79e-79 | FFCP PHASE1:Hg19::chr7:135931480..135931486,+#_14bb33615039afdf9052037a7d91f708 | p@chr7:135931480..135931486, + |
| 2.16e-63 | FFCP PHASE1:Hg19::chr1:205744117..205744127,-#_f6db00c50a1cf20f61c2f87d1ff10a42 | p8@RAB7L1 |
| 2.16e-63 | FFCP PHASE2:Hg19::chr1:205744117..205744127,-#_f6db00c50a1cf20f61c2f87d1ff10a42 | p8@RAB7L1 |
| 1.1e-59 | FFCP PHASE1:Hg19::chr19:18603318..18603327,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr19:18603318..18603327, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr6:138023154..138023161,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr6:138023154..138023161, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr5:162742836..162742845,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr5:162742836..162742845, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr3:111331533..111331540,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr3:111331533..111331540, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr4:182684840..182684848,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr4:182684840..182684848, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr3:33024873..33024877,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr3:33024873..33024877, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr19:10983266..10983276,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr19:10983266..10983276, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr1:168204286..168204299,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr1:168204286..168204299, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr19:53511768..53511784,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr19:53511768..53511784, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr7:135705408..135705462,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr7:135705408..135705462, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr21:18180040..18180058,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr21:18180040..18180058, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr4:85688154..85688161,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr4:85688154..85688161, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr3:169775687..169775690,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr3:169775687..169775690, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr12:130530197..130530209,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr12:130530197..130530209, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr8:56625901..56625913,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr8:56625901..56625913, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr2:228216588..228216609,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p10@MFF |
| 1.1e-59 | FFCP PHASE1:Hg19::chrX:10129363..10129369,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chrX:10129363..10129369, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr20:22771662..22771675,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr20:22771662..22771675, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr1:234631379..234631392,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr1:234631379..234631392, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr6:484679..484683,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr6:484679..484683, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr19:49488858..49488869,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr19:49488858..49488869, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr2:228216837..228216846,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p17@MFF |
| 1.1e-59 | FFCP PHASE2:Hg19::chr10:61574724..61574737,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr10:61574724..61574737, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr3:111311854..111311862,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr3:111311854..111311862, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr3:195306394..195306429,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p5@APOD |
| 1.1e-59 | FFCP PHASE2:Hg19::chr6:137816618..137816627,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr6:137816618..137816627, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr15:43323772..43323785,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr15:43323772..43323785, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr4:36393818..36393829,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p2@ENST00000504344 |
| 1.1e-59 | FFCP PHASE1:Hg19::chr19:42682291..42682301,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr19:42682291..42682301, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr8:42248931..42248936,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p6@VDAC3 |
| 1.1e-59 | FFCP PHASE2:Hg19::chr3:119279086..119279095,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr3:119279086..119279095, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr7:106397647..106397655,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr7:106397647..106397655, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr11:128154946..128154955,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr11:128154946..128154955, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr7:45954667..45954675,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p42@IGFBP3 |
| 1.1e-59 | FFCP PHASE1:Hg19::chr15:43323772..43323785,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr15:43323772..43323785, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr7:106363901..106363915,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr7:106363901..106363915, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr4:167951900..167951907,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr4:167951900..167951907, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr3:189266272..189266296,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr3:189266272..189266296, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr2:65209811..65209818,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr2:65209811..65209818, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr2:148293218..148293252,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr2:148293218..148293252, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr1:177159780..177159790,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr1:177159780..177159790, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr14:76957827..76957835,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr14:76957827..76957835, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr6:149464325..149464336,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr6:149464325..149464336, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr1:146746588..146746604,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p5@CHD1L |
| 1.1e-59 | FFCP PHASE2:Hg19::chr9:74995293..74995311,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr9:74995293..74995311, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr10:30336924..30336935,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p15@KIAA1462 |
| 1.1e-59 | FFCP PHASE2:Hg19::chr6:87324200..87324219,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr6:87324200..87324219, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr3:45926344..45926350,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr3:45926344..45926350, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr2:148282641..148282654,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr2:148282641..148282654, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr14:76957827..76957835,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr14:76957827..76957835, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr1:234765107..234765117,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p7@LINC00184 |
| 1.1e-59 | FFCP PHASE2:Hg19::chr19:53511749..53511757,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr19:53511749..53511757, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr10:111805643..111805655,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr10:111805643..111805655, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr7:135705379..135705388,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr7:135705379..135705388, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr21:18179795..18179798,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr21:18179795..18179798, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr8:59790413..59790418,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr8:59790413..59790418, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr10:15035404..15035424,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr10:15035404..15035424, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr2:53245239..53245255,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr2:53245239..53245255, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr10:120921395..120921406,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr10:120921395..120921406, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr3:180050773..180050786,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr3:180050773..180050786, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr21:18170731..18170736,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr21:18170731..18170736, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr4:6191002..6191007,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr4:6191002..6191007, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr9:74986248..74986275,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr9:74986248..74986275, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr6:138023015..138023024,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr6:138023015..138023024, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr3:45926373..45926388,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr3:45926373..45926388, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr7:142250929..142250940,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p3@AF430683, p3@AF430684, p3@AF430685 |
| 1.1e-59 | FFCP PHASE2:Hg19::chr4:167951727..167951732,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr4:167951727..167951732, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr21:43934831..43934840,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr21:43934831..43934840, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr8:56625901..56625913,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr8:56625901..56625913, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr2:228216588..228216609,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p10@MFF |
| 1.1e-59 | FFCP PHASE2:Hg19::chr19:42682242..42682253,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr19:42682242..42682253, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr17:64034078..64034124,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr17:64034078..64034124, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr10:31996512..31996530,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p5@ENST00000433770 |
| 1.1e-59 | FFCP PHASE2:Hg19::chr7:106397632..106397643,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr7:106397632..106397643, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr4:167983163..167983209,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr4:167983163..167983209, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr19:7599792..7599797,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr19:7599792..7599797, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr6:88854777..88854802,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p16@CNR1 |
| 1.1e-59 | FFCP PHASE1:Hg19::chr19:40074306..40074328,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr19:40074306..40074328, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr9:75002215..75002221,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr9:75002215..75002221, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr20:22771662..22771675,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr20:22771662..22771675, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr19:31524425..31524444,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr19:31524425..31524444, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr20:39574012..39574015,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr20:39574012..39574015, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr6:42362820..42362827,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr6:42362820..42362827, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr4:167932279..167932291,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr4:167932279..167932291, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr8:12548586..12548602,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr8:12548586..12548602, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr2:148279057..148279078,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr2:148279057..148279078, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr1:172807491..172807499,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr1:172807491..172807499, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr14:76957754..76957760,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr14:76957754..76957760, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr3:119281371..119281382,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr3:119281371..119281382, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr4:167748986..167748989,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr4:167748986..167748989, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr22:37484379..37484392,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr22:37484379..37484392, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr9:74981579..74981583,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr9:74981579..74981583, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr1:207627342..207627349,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p3@CR2 |
| 1.1e-59 | FFCP PHASE1:Hg19::chr7:102945487..102945492,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr7:102945487..102945492, + |
