UBERON:0004637: Difference between revisions
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|name=otic capsule | |name=otic capsule | ||
|namespace= | |namespace= | ||
|def="The | |def="The capsule surrounding the inner ear mechanism; in elasmobranchs, it remains cartilaginous in the adult; in the embryos of higher vertebrates, it is cartilaginous at first but later becomes bony (at approximately 23 weeks in humans)[Biology-Online]. Bilaterally paired cartilage encasing the semicircular canals of the inner ear[ZFA]." [http://medical-dictionary.thefreedictionary.com/otic+capsule, http://www.biology-online.org/dictionary/Otic_capsule, ZFA:0001500] | ||
|xref=AAO:0010143 | |xref=AAO:0010143;;SCTID:361515007;;VHOG:0000854 | ||
|is_a=UBERON: | |is_a=UBERON:0000020;;UBERON:0004120;;UBERON:0004121;;UBERON:0004765;;UBERON:0010314 | ||
|synonym="otic capsule" EXACT [ZFA:0001500];;" | |synonym="auditory capsule" RELATED [VHOG:0000854];;"otic capsule" EXACT [ZFA:0001500];;"periotic" RELATED [];;"periotic capsule" RELATED [VHOG:0000854] | ||
|comment= | |comment=Taxon notes: developmental relationships need to be checked | ||
|alt_id= | |alt_id= | ||
|disjoint_from= | |disjoint_from= | ||
| Line 14: | Line 14: | ||
|obo_creation_date= | |obo_creation_date= | ||
|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from=UBERON:0010351 | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of=UBERON:0001694;;UBERON:0001703;;UBERON:0001846 | |part_of=UBERON:0001694;;UBERON:0001703;;UBERON:0001846 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Skeletal elements surrounding the membranous labyrinth of the inner ear. Sensory capsules anterolateral to and confluent with occipital arch.[AAO]" xsd:string;;UBPROP:0000002 "relationship loss: part_of occipito-petrosal (AAO:0010831)[AAO]" xsd:string;;UBPROP:0000002 "relationship loss: part_of otic and occipital (AAO:0000993)[AAO]" xsd:string | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Latest revision as of 13:36, 27 June 2012
| Name: | otic capsule | ||
|---|---|---|---|
| Definition: | "The capsule surrounding the inner ear mechanism; in elasmobranchs, it remains cartilaginous in the adult; in the embryos of higher vertebrates, it is cartilaginous at first but later becomes bony (at approximately 23 weeks in humans)[Biology-Online]. Bilaterally paired cartilage encasing the semicircular canals of the inner ear[ZFA]." http://www.biology-online.org/dictionary/Otic_capsule, ZFA:0001500 | ||
| Xrefs: |
| ||
| Synonyms: |
"auditory capsule" RELATED [VHOG:0000854] "otic capsule" EXACT [ZFA:0001500] "periotic" RELATED [] "periotic capsule" RELATED [VHOG:0000854] | ||
| Comments: | Taxon notes: developmental relationships need to be checked |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000020(sense organ),UBERON:0004120(mesoderm-derived structure),UBERON:0004121(ectoderm-derived structure),UBERON:0004765(skeletal element),UBERON:0010314(structure with developmental contribution from neural crest) |
|---|---|
| develops_from: | UBERON:0010351(otic capsule cartilage condensation) |
| part_of: | UBERON:0001694(petrous part of temporal bone),UBERON:0001703(neurocranium),UBERON:0001846(internal ear) |
Children
| part of: | UBERON:0010113 (future membranous labyrinth) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004637 (otic capsule), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:43699188..43699216,+#_ef0848008da7a18a37873e78b0320066 | p@chr13:43699188..43699216, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr8:125802236..125802251,-#_ef0848008da7a18a37873e78b0320066 | p3@Fanca |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:78257491..78257498,+#_ef0848008da7a18a37873e78b0320066 | p@chr13:78257491..78257498, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:35012397..35012405,+#_ef0848008da7a18a37873e78b0320066 | p@chr3:35012397..35012405, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr4:115556972..115556979,+#_ef0848008da7a18a37873e78b0320066 | p3@Kncn |
| 1.87e-86 | FFCP PHASE2:Mm9::chr17:13983102..13983126,+#_ef0848008da7a18a37873e78b0320066 | p@chr17:13983102..13983126, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42207852..42207876,-#_ef0848008da7a18a37873e78b0320066 | p2@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:29733825..29733837,-#_ef0848008da7a18a37873e78b0320066 | p@chr7:29733825..29733837, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:93235228..93235249,+#_ef0848008da7a18a37873e78b0320066 | p@chr1:93235228..93235249, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42206730..42206739,-#_ef0848008da7a18a37873e78b0320066 | p@chr9:42206730..42206739, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:78257454..78257465,+#_ef0848008da7a18a37873e78b0320066 | p@chr13:78257454..78257465, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:48087761..48087775,-#_ef0848008da7a18a37873e78b0320066 | p@chr13:48087761..48087775, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:109052262..109052291,-#_ef0848008da7a18a37873e78b0320066 | p1@Tomt |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:152453066..152453075,-#_ef0848008da7a18a37873e78b0320066 | p@chr2:152453066..152453075, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:69811606..69811616,+#_ef0848008da7a18a37873e78b0320066 | p2@Otol1 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr5:28035962..28035983,+#_ef0848008da7a18a37873e78b0320066 | p@chr5:28035962..28035983, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr4:101908153..101908163,+#_ef0848008da7a18a37873e78b0320066 | p@chr4:101908153..101908163, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:107349392..107349413,-#_ef0848008da7a18a37873e78b0320066 | p2@Otogl |
| 1.87e-86 | FFCP PHASE2:Mm9::chr18:81327205..81327211,+#_ef0848008da7a18a37873e78b0320066 | p@chr18:81327205..81327211, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:11599532..11599539,-#_ef0848008da7a18a37873e78b0320066 | p@chr11:11599532..11599539, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr12:77084875..77084885,+#_ef0848008da7a18a37873e78b0320066 | p@chr12:77084875..77084885, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42206730..42206739,-#_ef0848008da7a18a37873e78b0320066 | p@chr9:42206730..42206739, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:63733478..63733491,-#_ef0848008da7a18a37873e78b0320066 | p1@Dytn |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:93218682..93218691,+#_ef0848008da7a18a37873e78b0320066 | p2@Espnl |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:4689776..4689785,-#_ef0848008da7a18a37873e78b0320066 | p@chr11:4689776..4689785, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr4:154208086..154208123,+#_ef0848008da7a18a37873e78b0320066 | p@chr4:154208086..154208123, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:80806020..80806031,-#_ef0848008da7a18a37873e78b0320066 | p3@Gipc3 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:85334335..85334353,+#_ef0848008da7a18a37873e78b0320066 | p@chr15:85334335..85334353, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:113251614..113251623,+#_ef0848008da7a18a37873e78b0320066 | p@chr6:113251614..113251623, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:154459246..154459253,+#_ef0848008da7a18a37873e78b0320066 | p@chr3:154459246..154459253, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42208023..42208043,-#_ef0848008da7a18a37873e78b0320066 | p4@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr6:86746562..86746579,-#_ef0848008da7a18a37873e78b0320066 | p@chr6:86746562..86746579, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr11:102123554..102123566,+#_ef0848008da7a18a37873e78b0320066 | p4@BC030867 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:63733478..63733491,-#_ef0848008da7a18a37873e78b0320066 | p1@Dytn |
| 1.87e-86 | FFCP PHASE1:Mm9::chrX:154140781..154140788,+#_ef0848008da7a18a37873e78b0320066 | p@chrX:154140781..154140788, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:69811606..69811616,+#_ef0848008da7a18a37873e78b0320066 | p2@Otol1 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:29935952..29935993,+#_ef0848008da7a18a37873e78b0320066 | p7@Pkn3 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr11:75421384..75421397,+#_ef0848008da7a18a37873e78b0320066 | p@chr11:75421384..75421397, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr15:65641779..65641790,+#_ef0848008da7a18a37873e78b0320066 | p@chr15:65641779..65641790, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr18:38104702..38104718,-#_ef0848008da7a18a37873e78b0320066 | p@chr18:38104702..38104718, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:106986057..106986062,+#_ef0848008da7a18a37873e78b0320066 | p1@Kcna10 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:48087761..48087775,-#_ef0848008da7a18a37873e78b0320066 | p@chr13:48087761..48087775, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr17:13983198..13983203,+#_ef0848008da7a18a37873e78b0320066 | p@chr17:13983198..13983203, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chrX:154140800..154140810,+#_ef0848008da7a18a37873e78b0320066 | p@chrX:154140800..154140810, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:172843885..172843890,-#_ef0848008da7a18a37873e78b0320066 | p@chr1:172843885..172843890, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr11:4689776..4689785,-#_ef0848008da7a18a37873e78b0320066 | p@chr11:4689776..4689785, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr15:12848147..12848162,+#_ef0848008da7a18a37873e78b0320066 | p@chr15:12848147..12848162, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr18:59222033..59222043,+#_ef0848008da7a18a37873e78b0320066 | p7@A730017C20Rik |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:43454162..43454170,-#_ef0848008da7a18a37873e78b0320066 | p@chr1:43454162..43454170, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr10:107349418..107349423,-#_ef0848008da7a18a37873e78b0320066 | p5@Otogl |
| 1.87e-86 | FFCP PHASE2:Mm9::chr17:31335869..31335899,-#_ef0848008da7a18a37873e78b0320066 | p1@Tmprss3 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr14:47293487..47293493,-#_ef0848008da7a18a37873e78b0320066 | p@chr14:47293487..47293493, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42208023..42208043,-#_ef0848008da7a18a37873e78b0320066 | p4@Tecta |
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:86745686..86745727,-#_ef0848008da7a18a37873e78b0320066 | p@chr6:86745686..86745727, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42207697..42207705,-#_ef0848008da7a18a37873e78b0320066 | p@chr9:42207697..42207705, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:121206695..121206711,-#_ef0848008da7a18a37873e78b0320066 | p1@Strc |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:154693281..154693317,-#_ef0848008da7a18a37873e78b0320066 | p@chr3:154693281..154693317, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr16:96494788..96494801,+#_ef0848008da7a18a37873e78b0320066 | p12@B3galt5 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:109265277..109265288,-#_ef0848008da7a18a37873e78b0320066 | p4@Chrna10 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:88068153..88068160,-#_ef0848008da7a18a37873e78b0320066 | p10@Sec11a |
| 1.87e-86 | FFCP PHASE1:Mm9::chr5:3909290..3909299,+#_ef0848008da7a18a37873e78b0320066 | p@chr5:3909290..3909299, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr4:115556939..115556945,+#_ef0848008da7a18a37873e78b0320066 | p4@Kncn |
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:108316802..108316807,-#_ef0848008da7a18a37873e78b0320066 | p@chr10:108316802..108316807, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:194818647..194818660,-#_ef0848008da7a18a37873e78b0320066 | p@chr1:194818647..194818660, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:68423014..68423037,+#_ef0848008da7a18a37873e78b0320066 | p1@Grxcr1 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42207697..42207705,-#_ef0848008da7a18a37873e78b0320066 | p@chr9:42207697..42207705, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:27964761..27964768,+#_ef0848008da7a18a37873e78b0320066 | p@chr7:27964761..27964768, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:50968647..50968668,-#_ef0848008da7a18a37873e78b0320066 | p@chr9:50968647..50968668, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:3909290..3909299,+#_ef0848008da7a18a37873e78b0320066 | p@chr5:3909290..3909299, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr5:150945209..150945220,+#_ef0848008da7a18a37873e78b0320066 | p@chr5:150945209..150945220, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:41495920..41495928,-#_ef0848008da7a18a37873e78b0320066 | p@chr9:41495920..41495928, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:53464178..53464186,+#_ef0848008da7a18a37873e78b0320066 | p@chr2:53464178..53464186, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr11:89702580..89702593,-#_ef0848008da7a18a37873e78b0320066 | p@chr11:89702580..89702593, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr10:80806047..80806059,-#_ef0848008da7a18a37873e78b0320066 | p4@Gipc3 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr4:151505798..151505818,-#_ef0848008da7a18a37873e78b0320066 | p21@Espn |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:92087926..92087938,+#_ef0848008da7a18a37873e78b0320066 | p2@Plscr5 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:58626291..58626298,-#_ef0848008da7a18a37873e78b0320066 | p@chr3:58626291..58626298, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:56208792..56208814,-#_ef0848008da7a18a37873e78b0320066 | p@chr9:56208792..56208814, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42207887..42207960,-#_ef0848008da7a18a37873e78b0320066 | p1@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr19:55256373..55256384,+#_ef0848008da7a18a37873e78b0320066 | p@chr19:55256373..55256384, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:97109753..97109764,+#_ef0848008da7a18a37873e78b0320066 | p3@Epyc |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:172843813..172843834,-#_ef0848008da7a18a37873e78b0320066 | p@chr1:172843813..172843834, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:182528371..182528385,+#_ef0848008da7a18a37873e78b0320066 | p@chr1:182528371..182528385, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr15:58022966..58022995,-#_ef0848008da7a18a37873e78b0320066 | p@chr15:58022966..58022995, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr4:130461150..130461185,+#_ef0848008da7a18a37873e78b0320066 | p@chr4:130461150..130461185, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr6:113251614..113251623,+#_ef0848008da7a18a37873e78b0320066 | p@chr6:113251614..113251623, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr19:10536767..10536777,-#_ef0848008da7a18a37873e78b0320066 | p@chr19:10536767..10536777, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:100724698..100724706,+#_ef0848008da7a18a37873e78b0320066 | p@chr3:100724698..100724706, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:30619378..30619412,-#_ef0848008da7a18a37873e78b0320066 | p11@Tsga14 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr19:10536797..10536802,-#_ef0848008da7a18a37873e78b0320066 | p@chr19:10536797..10536802, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:56208792..56208814,-#_ef0848008da7a18a37873e78b0320066 | p@chr9:56208792..56208814, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:106986057..106986062,+#_ef0848008da7a18a37873e78b0320066 | p1@Kcna10 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:35012397..35012405,+#_ef0848008da7a18a37873e78b0320066 | p@chr3:35012397..35012405, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:43699228..43699239,+#_ef0848008da7a18a37873e78b0320066 | p@chr13:43699228..43699239, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr17:13983095..13983100,+#_ef0848008da7a18a37873e78b0320066 | p@chr17:13983095..13983100, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:102123535..102123544,+#_ef0848008da7a18a37873e78b0320066 | p5@BC030867 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:78257518..78257522,+#_ef0848008da7a18a37873e78b0320066 | p@chr13:78257518..78257522, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:35012425..35012439,+#_ef0848008da7a18a37873e78b0320066 | p@chr3:35012425..35012439, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr4:115556989..115556997,+#_ef0848008da7a18a37873e78b0320066 | p1@Kncn |
| 1.87e-86 | FFCP PHASE2:Mm9::chr17:13983160..13983167,+#_ef0848008da7a18a37873e78b0320066 | p@chr17:13983160..13983167, + |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Skeletal elements surrounding the membranous labyrinth of the inner ear. Sensory capsules anterolateral to and confluent with occipital arch.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000002 "relationship loss: part_of occipito-petrosal (AAO:0010831)[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000002 "relationship loss: part_of otic and occipital (AAO:0000993)[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
