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|def="inner layer of the glomerulus, within the basement membrane surrounding the glomerular capillaries." [http://sourceforge.net/tracker/?group_id=76834&atid=974957, Wikipedia:Mesangium]
|def="inner layer of the glomerulus, within the basement membrane surrounding the glomerular capillaries." [http://sourceforge.net/tracker/?group_id=76834&atid=974957, Wikipedia:Mesangium]
|xref=BTO:0002494;;EMAPA:28248;;FMA:84139;;MA:0002617;;MESH:A.05.810.453.736.520.380;;ncithesaurus:Mesangium
|xref=BTO:0002494;;EMAPA:28248;;FMA:84139;;MA:0002617;;MESH:A.05.810.453.736.520.380;;ncithesaurus:Mesangium
|is_a=UBERON:0003567;;UBERON:0003891;;UBERON:0004120
|is_a=UBERON:0003567;;UBERON:0003891;;UBERON:0004120;;UBERON:0006554
|synonym=
|synonym=
|comment=WP considers this the same as glomerular mesangium. In MA, glomerular and extraglomerular are distingsuished.
|comment=WP considers this the same as glomerular mesangium. In MA, glomerular and extraglomerular are distingsuished.
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|obo_creation_date=
|obo_creation_date=
|subset=uberon_slim
|subset=uberon_slim
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
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|part_of=UBERON:0000074;;UBERON:0005215
|part_of=UBERON:0000074;;UBERON:0005215
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|preceded_by=
}}
}}

Latest revision as of 13:31, 27 June 2012

Name:mesangium
Definition:"inner layer of the glomerulus, within the basement membrane surrounding the glomerular capillaries." Wikipedia:Mesangium
Xrefs:
links:

BTO:0002494
EMAPA:28248
FMA:84139
MA:0002617
MESH:A.05.810.453.736.520.380

ncithesaurus:Mesangium
Comments:WP considers this the same as glomerular mesangium. In MA, glomerular and extraglomerular are distingsuished.
Alt_id: UBERON:FMA_84139-MA_0002617
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0003567(abdomen connective tissue),UBERON:0003891(stroma),UBERON:0004120(mesoderm-derived structure),UBERON:0006554(urinary system structure)
part_of:UBERON:0000074(renal glomerulus),UBERON:0005215(kidney interstitium)



Children

part of:UBERON:0002321 (extraglomerular mesangium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002319 (mesangium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.34e-79FFCP PHASE1:Hg19::chr2:133426030..133426041,-#_c81513fb666c86109c609c8742e91a38p@chr2:133426030..133426041, -
2.34e-79FFCP PHASE2:Hg19::chr2:133426030..133426041,-#_c81513fb666c86109c609c8742e91a38p@chr2:133426030..133426041, -
3.49e-79FFCP PHASE2:Hg19::chr1:51791596..51791607,-#_43d1d602090cd22c026a06117a8d1872p23@TTC39A
3.49e-79FFCP PHASE1:Hg19::chr1:51791596..51791607,-#_43d1d602090cd22c026a06117a8d1872p23@TTC39A
2.03e-66FFCP PHASE1:Hg19::chr2:133426106..133426117,-#_8ae2d104090fdb2d489bf1009c3475aep@chr2:133426106..133426117, -
2.03e-66FFCP PHASE2:Hg19::chr2:133426106..133426117,-#_8ae2d104090fdb2d489bf1009c3475aep@chr2:133426106..133426117, -
1.46e-50FFCP PHASE1:Hg19::chr10:134535354..134535366,-#_c423f62bcf4cddae314c460ede2e2aadp@chr10:134535354..134535366, -
1.46e-50FFCP PHASE1:Hg19::chr10:102495136..102495146,+#_c423f62bcf4cddae314c460ede2e2aadp8@PAX2
1.46e-50FFCP PHASE2:Hg19::chr10:134535354..134535366,-#_c423f62bcf4cddae314c460ede2e2aadp@chr10:134535354..134535366, -
1.46e-50FFCP PHASE2:Hg19::chr10:102495136..102495146,+#_c423f62bcf4cddae314c460ede2e2aadp8@PAX2
3.11e-50FFCP PHASE2:Hg19::chr17:17480803..17480814,-#_e8e6fb1f5202ae0515b6e2d6c60b9dc4p19@PEMT
3.11e-50FFCP PHASE1:Hg19::chr17:17480803..17480814,-#_e8e6fb1f5202ae0515b6e2d6c60b9dc4p19@PEMT
4.52e-50FFCP PHASE1:Hg19::chr10:102505655..102505689,+#_2e677e1044cfd35b2d09728b1c797feep10@PAX2
4.52e-50FFCP PHASE1:Hg19::chr9:81641483..81641491,-#_2e677e1044cfd35b2d09728b1c797feep@chr9:81641483..81641491, -
4.52e-50FFCP PHASE2:Hg19::chr10:102505655..102505689,+#_2e677e1044cfd35b2d09728b1c797feep10@PAX2
4.52e-50FFCP PHASE2:Hg19::chr9:81641483..81641491,-#_2e677e1044cfd35b2d09728b1c797feep@chr9:81641483..81641491, -
8.98e-41FFCP PHASE1:Hg19::chr17:171082..171101,+#_83fb2c4938b6295ad089af44cd9db6b8p@chr17:171082..171101, +
8.98e-41FFCP PHASE2:Hg19::chr17:171082..171101,+#_83fb2c4938b6295ad089af44cd9db6b8p@chr17:171082..171101, +
1.1e-40FFCP PHASE1:Hg19::chr3:172384246..172384250,+#_12c49c2327a177d84f64362866b7b157p@chr3:172384246..172384250, +
1.1e-40FFCP PHASE2:Hg19::chr3:172384246..172384250,+#_12c49c2327a177d84f64362866b7b157p@chr3:172384246..172384250, +
1.64e-40FFCP PHASE1:Hg19::chr1:45087902..45087912,+#_29430b1d6f435a156900e011e106282ep@chr1:45087902..45087912, +
1.64e-40FFCP PHASE2:Hg19::chr1:45087902..45087912,+#_29430b1d6f435a156900e011e106282ep@chr1:45087902..45087912, +
3.68e-40FFCP PHASE2:Hg19::chr10:102505552..102505563,+#_17eb6ba3287d7cff079bab4bf2ddfb3cp5@PAX2
3.68e-40FFCP PHASE1:Hg19::chr10:102505552..102505563,+#_17eb6ba3287d7cff079bab4bf2ddfb3cp5@PAX2
8.2e-37FFCP PHASE1:Hg19::chr10:102505312..102505320,+#_fde88588a9f8a619354824113f177438p6@PAX2
8.2e-37FFCP PHASE2:Hg19::chr10:102505312..102505320,+#_fde88588a9f8a619354824113f177438p6@PAX2
9.84e-37FFCP PHASE1:Hg19::chr9:126131131..126131159,+#_5a79f830d8f73d22abd0f9263319f35ap3@CRB2
9.84e-37FFCP PHASE2:Hg19::chr9:126131131..126131159,+#_5a79f830d8f73d22abd0f9263319f35ap3@CRB2
6.0e-34FFCP PHASE2:Hg19::chr2:113984760..113984792,+#_4520ce32e55634ce6b8620c73fed66e3p@chr2:113984760..113984792, +
6.0e-34FFCP PHASE1:Hg19::chr2:113984760..113984792,+#_4520ce32e55634ce6b8620c73fed66e3p@chr2:113984760..113984792, +
7.05e-34FFCP PHASE1:Hg19::chr7:27164585..27164612,-#_487e47a109d2a4890ffe464ee5a6d584p@chr7:27164585..27164612, -
7.05e-34FFCP PHASE2:Hg19::chr11:555661..555679,+#_487e47a109d2a4890ffe464ee5a6d584p@chr11:555661..555679, +
7.05e-34FFCP PHASE2:Hg19::chr1:858638..858648,+#_487e47a109d2a4890ffe464ee5a6d584p@chr1:858638..858648, +
7.05e-34FFCP PHASE2:Hg19::chr7:27164585..27164612,-#_487e47a109d2a4890ffe464ee5a6d584p@chr7:27164585..27164612, -
7.05e-34FFCP PHASE1:Hg19::chr1:858638..858648,+#_487e47a109d2a4890ffe464ee5a6d584p@chr1:858638..858648, +
7.05e-34FFCP PHASE1:Hg19::chr11:555661..555679,+#_487e47a109d2a4890ffe464ee5a6d584p@chr11:555661..555679, +
8.39e-34FFCP PHASE2:Hg19::chr10:73848549..73848564,-#_e2fc01b39b598473a99ec10165ba6688p13@SPOCK2
8.39e-34FFCP PHASE1:Hg19::chr10:73848549..73848564,-#_e2fc01b39b598473a99ec10165ba6688p13@SPOCK2
1.17e-33FFCP PHASE2:Hg19::chr11:118477144..118477156,+#_61c35d63af4f07a6f1dbf3ef0400d669p25@PHLDB1
1.17e-33FFCP PHASE1:Hg19::chr11:118477144..118477156,+#_61c35d63af4f07a6f1dbf3ef0400d669p25@PHLDB1
3.35e-32FFCP PHASE2:Hg19::chr2:693362..693373,+#_988a7c8548c7caaf9869de1e6db55b44p@chr2:693362..693373, +
3.35e-32FFCP PHASE1:Hg19::chr2:693362..693373,+#_988a7c8548c7caaf9869de1e6db55b44p@chr2:693362..693373, +
2.54e-31FFCP PHASE1:Hg19::chrX:106146562..106146577,-#_11fa3d8a1e300e10ad0cb5dcb03dfd5cp1@RIPPLY1
2.54e-31FFCP PHASE2:Hg19::chrX:106146562..106146577,-#_11fa3d8a1e300e10ad0cb5dcb03dfd5cp1@RIPPLY1
8.05e-30FFCP PHASE1:Hg19::chr17:171147..171161,+#_5810dfcbb6480630fc1cee729266895cp@chr17:171147..171161, +
8.05e-30FFCP PHASE2:Hg19::chr17:171147..171161,+#_5810dfcbb6480630fc1cee729266895cp@chr17:171147..171161, +
2.96e-29FFCP PHASE2:Hg19::chr2:165477405..165477418,-#_ddc69187183fa2fb4ac32f6422672bc6p@chr2:165477405..165477418, -
2.96e-29FFCP PHASE1:Hg19::chr2:165477405..165477418,-#_ddc69187183fa2fb4ac32f6422672bc6p@chr2:165477405..165477418, -
4.55e-29FFCP PHASE2:Hg19::chr1:874109..874143,+#_5a5dce170b165c792c70711d0b9d646ep@chr1:874109..874143, +
4.55e-29FFCP PHASE1:Hg19::chr1:874109..874143,+#_5a5dce170b165c792c70711d0b9d646ep@chr1:874109..874143, +
1.43e-28FFCP PHASE1:Hg19::chr2:113999199..113999214,+#_555a0be0ead5ff2b8e28b0cabcdac929p@chr2:113999199..113999214, +
1.43e-28FFCP PHASE2:Hg19::chr2:113999199..113999214,+#_555a0be0ead5ff2b8e28b0cabcdac929p@chr2:113999199..113999214, +
1.83e-27FFCP PHASE1:Hg19::chr20:6034598..6034603,-#_c7e11ae2cd6dc4692770f83378b198dcp7@LRRN4
1.83e-27FFCP PHASE1:Hg19::chr16:86604624..86604648,+#_c7e11ae2cd6dc4692770f83378b198dcp@chr16:86604624..86604648, +
1.83e-27FFCP PHASE2:Hg19::chr20:6034598..6034603,-#_c7e11ae2cd6dc4692770f83378b198dcp7@LRRN4
1.83e-27FFCP PHASE2:Hg19::chr16:86604624..86604648,+#_c7e11ae2cd6dc4692770f83378b198dcp@chr16:86604624..86604648, +
2.74e-27FFCP PHASE2:Hg19::chr19:56091499..56091517,-#_dfa7a16c9390d24fb9188d911aadb45ap@chr19:56091499..56091517, -
2.74e-27FFCP PHASE1:Hg19::chr19:56091499..56091517,-#_dfa7a16c9390d24fb9188d911aadb45ap@chr19:56091499..56091517, -
2.78e-26FFCP PHASE2:Hg19::chr9:112260040..112260045,+#_22d3d2a84e83e5f11054ef3f35775b99p@chr9:112260040..112260045, +
2.78e-26FFCP PHASE1:Hg19::chr9:112260040..112260045,+#_22d3d2a84e83e5f11054ef3f35775b99p@chr9:112260040..112260045, +
4.63e-26FFCP PHASE1:Hg19::chr22:30645170..30645182,-#_7656936f4d6ced936d87a40f0c15b33cp@chr22:30645170..30645182, -
4.63e-26FFCP PHASE2:Hg19::chr22:30645170..30645182,-#_7656936f4d6ced936d87a40f0c15b33cp@chr22:30645170..30645182, -
7.14e-26FFCP PHASE2:Hg19::chr8:22419319..22419327,+#_a916886536f9b57be6a1f74e03d65819p@chr8:22419319..22419327, +
7.14e-26FFCP PHASE1:Hg19::chr8:22419319..22419327,+#_a916886536f9b57be6a1f74e03d65819p@chr8:22419319..22419327, +
9.18e-26FFCP PHASE2:Hg19::chr17:15555143..15555150,-#_067a7c334142f6f5be0b31ffd89f670ep12@TRIM16
9.18e-26FFCP PHASE1:Hg19::chr8:28196820..28196830,+#_067a7c334142f6f5be0b31ffd89f670ep@chr8:28196820..28196830, +
9.18e-26FFCP PHASE1:Hg19::chr2:176973165..176973169,-#_067a7c334142f6f5be0b31ffd89f670ep@chr2:176973165..176973169, -
9.18e-26FFCP PHASE1:Hg19::chr20:6031540..6031548,-#_067a7c334142f6f5be0b31ffd89f670ep@chr20:6031540..6031548, -
9.18e-26FFCP PHASE1:Hg19::chr10:102505946..102505949,+#_067a7c334142f6f5be0b31ffd89f670ep14@PAX2
9.18e-26FFCP PHASE2:Hg19::chr6:31833005..31833017,-#_067a7c334142f6f5be0b31ffd89f670ep@chr6:31833005..31833017, -
9.18e-26FFCP PHASE1:Hg19::chr11:32457397..32457404,-#_067a7c334142f6f5be0b31ffd89f670ep15@WT1
9.18e-26FFCP PHASE2:Hg19::chr8:28196820..28196830,+#_067a7c334142f6f5be0b31ffd89f670ep@chr8:28196820..28196830, +
9.18e-26FFCP PHASE2:Hg19::chr2:176973165..176973169,-#_067a7c334142f6f5be0b31ffd89f670ep@chr2:176973165..176973169, -
9.18e-26FFCP PHASE2:Hg19::chr20:6031540..6031548,-#_067a7c334142f6f5be0b31ffd89f670ep@chr20:6031540..6031548, -
9.18e-26FFCP PHASE1:Hg19::chr17:15555143..15555150,-#_067a7c334142f6f5be0b31ffd89f670ep12@TRIM16
9.18e-26FFCP PHASE2:Hg19::chr10:102505946..102505949,+#_067a7c334142f6f5be0b31ffd89f670ep14@PAX2
9.18e-26FFCP PHASE1:Hg19::chr6:31833005..31833017,-#_067a7c334142f6f5be0b31ffd89f670ep@chr6:31833005..31833017, -
9.18e-26FFCP PHASE2:Hg19::chr11:32457397..32457404,-#_067a7c334142f6f5be0b31ffd89f670ep15@WT1
2.37e-25FFCP PHASE1:Hg19::chr7:27160553..27160560,+#_1a816c6bc2537ba5917586db2bdab190p1@ENST00000523364, p1@uc010kux.1
2.37e-25FFCP PHASE2:Hg19::chr7:27160553..27160560,+#_1a816c6bc2537ba5917586db2bdab190p1@ENST00000523364, p1@uc010kux.1
4.38e-25FFCP PHASE2:Hg19::chr7:27219754..27219759,-#_6627061d99f6fa860e0cbe3079ee08afp16@HOXA10
4.38e-25FFCP PHASE1:Hg19::chr7:27219754..27219759,-#_6627061d99f6fa860e0cbe3079ee08afp16@HOXA10
4.43e-25FFCP PHASE2:Hg19::chr1:149908263..149908281,-#_024155d4b1bfb1c96bf4b5ece6f7af7cp6@MTMR11
4.43e-25FFCP PHASE1:Hg19::chr1:149908263..149908281,-#_024155d4b1bfb1c96bf4b5ece6f7af7cp6@MTMR11
7.09e-25FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_0032c61b6baf36a01ec0f043ea8ed237p4@PAX2
7.09e-25FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_0032c61b6baf36a01ec0f043ea8ed237p4@PAX2
3.76e-24FFCP PHASE1:Hg19::chr1:46797583..46797614,-#_87e460f6859ffb6c3dc6cb9e57e25fa7p@chr1:46797583..46797614, -
3.76e-24FFCP PHASE2:Hg19::chr1:46797583..46797614,-#_87e460f6859ffb6c3dc6cb9e57e25fa7p@chr1:46797583..46797614, -
7.62e-24FFCP PHASE1:Hg19::chr6:94129519..94129544,+#_98587b8e20032c31b5e34991f4b5000ap@chr6:94129519..94129544, +
7.62e-24FFCP PHASE2:Hg19::chr6:94129519..94129544,+#_98587b8e20032c31b5e34991f4b5000ap@chr6:94129519..94129544, +
8.02e-24FFCP PHASE2:Hg19::chr2:693380..693398,+#_81af350e48efd606c42320296dc73439p@chr2:693380..693398, +
8.02e-24FFCP PHASE1:Hg19::chr2:693380..693398,+#_81af350e48efd606c42320296dc73439p@chr2:693380..693398, +
8.98e-24FFCP PHASE1:Hg19::chr2:133426077..133426103,-#_0dab9e7c42dc61a63eb395fa36d2e1a4p@chr2:133426077..133426103, -
8.98e-24FFCP PHASE2:Hg19::chr2:133426077..133426103,-#_0dab9e7c42dc61a63eb395fa36d2e1a4p@chr2:133426077..133426103, -
1.99e-23FFCP PHASE1:Hg19::chr11:32457350..32457361,+#_090ca61caaaf86052af43640058da272p5@WT1-AS
1.99e-23FFCP PHASE2:Hg19::chr11:32457350..32457361,+#_090ca61caaaf86052af43640058da272p5@WT1-AS
4.37e-23FFCP PHASE1:Hg19::chr2:176968471..176968476,-#_21b21414c9ed850d15e21aae77b7518dp@chr2:176968471..176968476, -
4.37e-23FFCP PHASE2:Hg19::chr2:176968471..176968476,-#_21b21414c9ed850d15e21aae77b7518dp@chr2:176968471..176968476, -
4.89e-23FFCP PHASE2:Hg19::chr12:15592437..15592438,+#_54bd7ea65274d72921eca858f3545e4cp1@ENST00000469884
4.89e-23FFCP PHASE1:Hg19::chr12:15592437..15592438,+#_54bd7ea65274d72921eca858f3545e4cp1@ENST00000469884

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