UBERON:0002003: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| (One intermediate revision by the same user not shown) | |||
| Line 4: | Line 4: | ||
|namespace= | |namespace= | ||
|def="Neural tree (organ) which is directly continuous with the neuraxis. Examples: phrenic nerve, radial nerve, ilioinguinal nerve, sciatic nerve[FMA]. The peripheral nerves include the 12 cranial nerves, the spinal nerves and roots, and what are called the autonomic nerves that are concerned specifically with the regulation of the heart muscle, the muscles in blood vessel walls, and glands[BTO]. The nerves outside of the brain and spinal cord, including the autonomic, cranial, and spinal nerves. Peripheral nerves contain non-neuronal cells and connective tissue as well as axons. The connective tissue layers include, from the outside to the inside, the epineurium, the perineurium, and the endoneurium[GAID]. A peripheral nerve, or simply nerve is an enclosed, cable-like bundle of peripheral axons (the long, slender projections of neurons). A nerve provides a common pathway for the electrochemical nerve impulses that are transmitted along each of the axons. Nerves are found only in the peripheral nervous system. In the central nervous system, the analogous structures are known as tracts[WP]." [Wikipedia:Peripheral_nerve] | |def="Neural tree (organ) which is directly continuous with the neuraxis. Examples: phrenic nerve, radial nerve, ilioinguinal nerve, sciatic nerve[FMA]. The peripheral nerves include the 12 cranial nerves, the spinal nerves and roots, and what are called the autonomic nerves that are concerned specifically with the regulation of the heart muscle, the muscles in blood vessel walls, and glands[BTO]. The nerves outside of the brain and spinal cord, including the autonomic, cranial, and spinal nerves. Peripheral nerves contain non-neuronal cells and connective tissue as well as axons. The connective tissue layers include, from the outside to the inside, the epineurium, the perineurium, and the endoneurium[GAID]. A peripheral nerve, or simply nerve is an enclosed, cable-like bundle of peripheral axons (the long, slender projections of neurons). A nerve provides a common pathway for the electrochemical nerve impulses that are transmitted along each of the axons. Nerves are found only in the peripheral nervous system. In the central nervous system, the analogous structures are known as tracts[WP]." [Wikipedia:Peripheral_nerve] | ||
|xref=BTO:0001027;;EMAPA:25148;;EV: | |xref=BTO:0001027;;EMAPA:25148;;EV:0100371;;FMA:65239;;GAID:747;;http://upload.wikimedia.org/wikipedia/commons/thumb/b/ba/Nervous_system_diagram.png/200px-Nervous_system_diagram.png;;MA:0000228;;MESH:A.08.800.800;;ncithesaurus:Peripheral_Nerve;;NIF_GrossAnatomy:birnlex_1615;;SCTID:244457007;;VHOG:0000901;;XAO:0000204 | ||
|is_a=UBERON:0001021 | |is_a=UBERON:0001021;;UBERON:0010314 | ||
|synonym="nerve part of peripheral nervous system" EXACT [NIF_GrossAnatomy:birnlex_1615];;"peripheral nerve tree" EXACT [] | |synonym="nerve part of peripheral nervous system" EXACT [NIF_GrossAnatomy:birnlex_1615];;"peripheral nerve tree" EXACT [] | ||
|comment=TODO - check definition vs nerve | |comment=TODO - check definition vs nerve | ||
| Line 14: | Line 14: | ||
|obo_creation_date= | |obo_creation_date= | ||
|subset=major_organ;;uberon_slim | |subset=major_organ;;uberon_slim | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
Latest revision as of 13:30, 27 June 2012
| Name: | peripheral nerve | ||
|---|---|---|---|
| Definition: | "Neural tree (organ) which is directly continuous with the neuraxis. Examples: phrenic nerve, radial nerve, ilioinguinal nerve, sciatic nerve[FMA]. The peripheral nerves include the 12 cranial nerves, the spinal nerves and roots, and what are called the autonomic nerves that are concerned specifically with the regulation of the heart muscle, the muscles in blood vessel walls, and glands[BTO]. The nerves outside of the brain and spinal cord, including the autonomic, cranial, and spinal nerves. Peripheral nerves contain non-neuronal cells and connective tissue as well as axons. The connective tissue layers include, from the outside to the inside, the epineurium, the perineurium, and the endoneurium[GAID]. A peripheral nerve, or simply nerve is an enclosed, cable-like bundle of peripheral axons (the long, slender projections of neurons). A nerve provides a common pathway for the electrochemical nerve impulses that are transmitted along each of the axons. Nerves are found only in the peripheral nervous system. In the central nervous system, the analogous structures are known as tracts[WP]." [Wikipedia:Peripheral_nerve] | ||
| Xrefs: |
| ||
| Synonyms: |
"nerve part of peripheral nervous system" EXACT [NIF_GrossAnatomy:birnlex_1615] "peripheral nerve tree" EXACT [] | ||
| Comments: | TODO - check definition vs nerve | ||
| Alt_id: |
UBERON:0003377 UBERON:FMA_65239-MA_0000228-XAO_0000204 | ||
| Subset: |
major_organ uberon_slim |
200px-Nervous_system_diagram.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0001021(nerve),UBERON:0010314(structure with developmental contribution from neural crest) |
|---|---|
| part_of: | UBERON:0000010(peripheral nervous system) |
Children
| is a: | UBERON:0001322 (sciatic nerve) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002003 (peripheral nerve), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
No analysis results
