CL:0000084: Difference between revisions
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|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from=CL:0000827 | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
Revision as of 12:59, 27 June 2012
| Name: | T cell | ||
|---|---|---|---|
| Namespace: | cell;;efo | ||
| Definition: | "A type of lymphocyte whose defining characteristic is the expression of a T cell receptor complex." [GOC:add, GOC:tfm, ISBN:0781735149] | ||
| Xrefs: |
| ||
| Synonyms: |
"immature T cell" RELATED [] "mature T cell" RELATED [] "T lymphocyte" EXACT [] "T-cell" EXACT [] "T-lymphocyte" EXACT [] | ||
| Alt_id: |
CL:0000804 CL:0000812 |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000542(lymphocyte) |
|---|---|
| disjoint_from: | CL:0000623(natural killer cell),CL:0000945(lymphocyte of B lineage) |
| develops_from: | CL:0000827(pro-T cell) |
Children
| is a: | CL:0000789 (alpha-beta T cell),CL:0000798 (gamma-delta T cell),CL:0002419 (mature T cell),CL:0002420 (immature T cell),FF:10429-106D6 (acute lymphoblastic leukemia (T-ALL) cell line:HPB-ALL),FF:10795-110I3 (anaplastic large cell lymphoma cell line:Ki-JK) |
|---|---|
| derives from: | FF:0101014 (Mo-T cell sample),FF:0102504 (T-lymphoblastic leukemia cell line sample),FF:0103212 (T-lymphoma cell line sample),FF:0103505 (T-cell chronic lymphocytic leukemia cell sample),FF:0300104 (EBF KO HPCs induced to T cell) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10416-106C2 (chronic lymphocytic leukemia (T-CLL) cell line:SKW-3)
- 10421-106C7 (adult T-cell leukemia cell line:ATN-1)
- 10429-106D6 (acute lymphoblastic leukemia (T-ALL) cell line:HPB-ALL)
- 10464-106H5 (acute lymphoblastic leukemia (T-ALL) cell line:Jurkat)
- 10467-106H8
- 10498-107C3
- 10528-107F6
- 10546-107H6
- 10547-107H7
- 10548-107H8
... further results Mouse (Mus musculus)
- 10416-106C2 (chronic lymphocytic leukemia (T-CLL) cell line:SKW-3)
- 10421-106C7 (adult T-cell leukemia cell line:ATN-1)
- 10429-106D6 (acute lymphoblastic leukemia (T-ALL) cell line:HPB-ALL)
- 10464-106H5 (acute lymphoblastic leukemia (T-ALL) cell line:Jurkat)
- 10467-106H8
- 10498-107C3
- 10528-107F6
- 10546-107H6
- 10547-107H7
- 10548-107H8
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000084 (T cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.9e-89 | FFCP PHASE2:Hg19::chr5:35859622..35859626,+#_3e5373ddbf2696f8d42b906640f28145 | p@chr5:35859622..35859626, + |
| 2.9e-89 | FFCP PHASE1:Hg19::chr5:35859622..35859626,+#_3e5373ddbf2696f8d42b906640f28145 | p@chr5:35859622..35859626, + |
| 1.02e-73 | FFCP PHASE1:Mm9::chr4:63522330..63522352,-#_f5417ed8f8a66e957675c1a398b68235 | p4@Tnfsf8 |
| 1.02e-73 | FFCP PHASE2:Mm9::chr4:63522330..63522352,-#_f5417ed8f8a66e957675c1a398b68235 | p4@Tnfsf8 |
| 1.33e-72 | FFCP PHASE2:Hg19::chr2:87053288..87053295,-#_bb2a0505edfed876e1834016a7cabc63 | p@chr2:87053288..87053295, - |
| 1.33e-72 | FFCP PHASE1:Hg19::chr2:87053288..87053295,-#_bb2a0505edfed876e1834016a7cabc63 | p@chr2:87053288..87053295, - |
| 1.48e-71 | FFCP PHASE2:Hg19::chr17:80085772..80085810,-#_adce0fdab6c67047cd6e093091928973 | p@chr17:80085772..80085810, - |
| 1.48e-71 | FFCP PHASE1:Hg19::chr17:80085772..80085810,-#_adce0fdab6c67047cd6e093091928973 | p@chr17:80085772..80085810, - |
| 6.78e-71 | FFCP PHASE1:Mm9::chr4:151490126..151490137,+#_40d0b8a48eb47945afa2246caac5638d | p3@Tnfrsf25 |
| 6.78e-71 | FFCP PHASE1:Mm9::chr6:48637679..48637692,+#_40d0b8a48eb47945afa2246caac5638d | p@chr6:48637679..48637692, + |
| 6.78e-71 | FFCP PHASE1:Mm9::chr14:54150421..54150439,+#_40d0b8a48eb47945afa2246caac5638d | p1@uc007tsm.1 |
| 6.78e-71 | FFCP PHASE2:Mm9::chr19:10869146..10869168,-#_40d0b8a48eb47945afa2246caac5638d | p@chr19:10869146..10869168, - |
| 6.78e-71 | FFCP PHASE2:Mm9::chr14:54831123..54831141,+#_40d0b8a48eb47945afa2246caac5638d | p1@ENSMUST00000103733 |
| 6.78e-71 | FFCP PHASE2:Mm9::chr6:48637679..48637692,+#_40d0b8a48eb47945afa2246caac5638d | p@chr6:48637679..48637692, + |
| 6.78e-71 | FFCP PHASE1:Mm9::chr11:99015330..99015341,-#_40d0b8a48eb47945afa2246caac5638d | p@chr11:99015330..99015341, - |
| 6.78e-71 | FFCP PHASE2:Mm9::chr14:54150421..54150439,+#_40d0b8a48eb47945afa2246caac5638d | p1@uc007tsm.1 |
| 6.78e-71 | FFCP PHASE1:Mm9::chr19:10869146..10869168,-#_40d0b8a48eb47945afa2246caac5638d | p@chr19:10869146..10869168, - |
| 6.78e-71 | FFCP PHASE1:Mm9::chr14:54831123..54831141,+#_40d0b8a48eb47945afa2246caac5638d | p1@ENSMUST00000103733 |
| 6.78e-71 | FFCP PHASE1:Mm9::chr4:32339511..32339518,+#_40d0b8a48eb47945afa2246caac5638d | p@chr4:32339511..32339518, + |
| 6.78e-71 | FFCP PHASE1:Mm9::chr11:11590836..11590851,+#_40d0b8a48eb47945afa2246caac5638d | p@chr11:11590836..11590851, + |
| 6.78e-71 | FFCP PHASE2:Mm9::chr11:99015330..99015341,-#_40d0b8a48eb47945afa2246caac5638d | p@chr11:99015330..99015341, - |
| 6.78e-71 | FFCP PHASE2:Mm9::chr11:11590836..11590851,+#_40d0b8a48eb47945afa2246caac5638d | p@chr11:11590836..11590851, + |
| 6.78e-71 | FFCP PHASE2:Mm9::chr4:151490126..151490137,+#_40d0b8a48eb47945afa2246caac5638d | p3@Tnfrsf25 |
| 6.78e-71 | FFCP PHASE2:Mm9::chr4:32339511..32339518,+#_40d0b8a48eb47945afa2246caac5638d | p@chr4:32339511..32339518, + |
| 2.06e-70 | FFCP PHASE1:Hg19::chr11:118186681..118186704,-#_27efe70ff0be6e615a491ac20bb2033f | p1@CU690625 |
| 2.06e-70 | FFCP PHASE2:Hg19::chr11:118186681..118186704,-#_27efe70ff0be6e615a491ac20bb2033f | p1@CU690625 |
| 1.31e-69 | FFCP PHASE2:Hg19::chr2:38830433..38830444,-#_4666695ebfce438a5d0fee2893fccb6b | p10@HNRPLL |
| 1.31e-69 | FFCP PHASE1:Hg19::chr2:38830433..38830444,-#_4666695ebfce438a5d0fee2893fccb6b | p10@HNRPLL |
| 6.71e-69 | FFCP PHASE2:Hg19::chr17:29637535..29637559,+#_25028c5d340b78a62633755d70174485 | p@chr17:29637535..29637559, + |
| 6.71e-69 | FFCP PHASE1:Hg19::chr17:29637535..29637559,+#_25028c5d340b78a62633755d70174485 | p@chr17:29637535..29637559, + |
| 7.62e-69 | FFCP PHASE2:Mm9::chr4:63521957..63521980,-#_0aa650052ccb379c5e091619ea0a58e2 | p@chr4:63521957..63521980, - |
| 7.62e-69 | FFCP PHASE1:Mm9::chr4:63521957..63521980,-#_0aa650052ccb379c5e091619ea0a58e2 | p@chr4:63521957..63521980, - |
| 2.06e-68 | FFCP PHASE2:Hg19::chr15:89179440..89179457,-#_71447f59f395d1384667cd523bcf8d17 | p@chr15:89179440..89179457, - |
| 2.06e-68 | FFCP PHASE1:Hg19::chr15:89179440..89179457,-#_71447f59f395d1384667cd523bcf8d17 | p@chr15:89179440..89179457, - |
| 2.88e-67 | FFCP PHASE2:Hg19::chr5:35854487..35854499,-#_b20c926156cbd2218ba9409ef092ec56 | p@chr5:35854487..35854499, - |
| 2.88e-67 | FFCP PHASE1:Hg19::chr5:35854487..35854499,-#_b20c926156cbd2218ba9409ef092ec56 | p@chr5:35854487..35854499, - |
| 6.74e-66 | FFCP PHASE1:Mm9::chr4:32335511..32335532,+#_ac14bd5aa349d761172bcbf2b304f24f | p@chr4:32335511..32335532, + |
| 6.74e-66 | FFCP PHASE2:Mm9::chr4:32335511..32335532,+#_ac14bd5aa349d761172bcbf2b304f24f | p@chr4:32335511..32335532, + |
| 9.47e-66 | FFCP PHASE1:Hg19::chr5:35854779..35854826,+#_cd57c4c18eddf90ca098e7890e77769f | p@chr5:35854779..35854826, + |
| 9.47e-66 | FFCP PHASE2:Hg19::chr5:35854779..35854826,+#_cd57c4c18eddf90ca098e7890e77769f | p@chr5:35854779..35854826, + |
| 1.04e-65 | FFCP PHASE2:Hg19::chr4:103551892..103551903,-#_6961082ee5c562330b6674e9445f3168 | p@chr4:103551892..103551903, - |
| 1.04e-65 | FFCP PHASE1:Hg19::chr4:103551892..103551903,-#_6961082ee5c562330b6674e9445f3168 | p@chr4:103551892..103551903, - |
| 3.53e-65 | FFCP PHASE2:Hg19::chr16:3117688..3117736,+#_e93d788317a14d62c3a719b31a87fa0f | p7@IL32 |
| 3.53e-65 | FFCP PHASE1:Hg19::chr16:3117688..3117736,+#_e93d788317a14d62c3a719b31a87fa0f | p7@IL32 |
| 7.34e-65 | FFCP PHASE1:Hg19::chr1:90075464..90075470,-#_c4c3c644da1fe69e145c8b9ab54084b4 | p@chr1:90075464..90075470, - |
| 7.34e-65 | FFCP PHASE2:Hg19::chr1:90075464..90075470,-#_c4c3c644da1fe69e145c8b9ab54084b4 | p@chr1:90075464..90075470, - |
| 1.94e-64 | FFCP PHASE2:Mm9::chr6:129225479..129225509,+#_470800bd27dee3af7ac5d6353664b0b6 | p@chr6:129225479..129225509, + |
| 1.94e-64 | FFCP PHASE1:Mm9::chr6:129225479..129225509,+#_470800bd27dee3af7ac5d6353664b0b6 | p@chr6:129225479..129225509, + |
| 3.0e-64 | FFCP PHASE2:Hg19::chr18:68318174..68318193,-#_77ad1a116852b12dc1a5bf98e675a7e0 | p1@GTSCR1 |
| 3.0e-64 | FFCP PHASE1:Hg19::chr18:68318174..68318193,-#_77ad1a116852b12dc1a5bf98e675a7e0 | p1@GTSCR1 |
| 3.36e-64 | FFCP PHASE2:Mm9::chr4:63522312..63522327,-#_9e420efd5e6dec154445d4ee499b445c | p3@Tnfsf8 |
| 3.36e-64 | FFCP PHASE1:Mm9::chr4:63522312..63522327,-#_9e420efd5e6dec154445d4ee499b445c | p3@Tnfsf8 |
| 3.94e-64 | FFCP PHASE1:Hg19::chr1:32716843..32716848,+#_3793bab7eb1f1220e94adeb733817998 | p6@LCK |
| 3.94e-64 | FFCP PHASE2:Hg19::chr1:32716843..32716848,+#_3793bab7eb1f1220e94adeb733817998 | p6@LCK |
| 4.15e-64 | FFCP PHASE2:Mm9::chr14:54811976..54811990,+#_22a862300059ad214fc339272ae5044d | p1@ENSMUST00000103714 |
| 4.15e-64 | FFCP PHASE2:Mm9::chr12:74704873..74704900,+#_22a862300059ad214fc339272ae5044d | p@chr12:74704873..74704900, + |
| 4.15e-64 | FFCP PHASE2:Mm9::chr14:56207154..56207165,-#_22a862300059ad214fc339272ae5044d | p@chr14:56207154..56207165, - |
| 4.15e-64 | FFCP PHASE1:Mm9::chr7:31935025..31935037,+#_22a862300059ad214fc339272ae5044d | p@chr7:31935025..31935037, + |
| 4.15e-64 | FFCP PHASE1:Mm9::chr14:54811976..54811990,+#_22a862300059ad214fc339272ae5044d | p1@ENSMUST00000103714 |
| 4.15e-64 | FFCP PHASE1:Mm9::chr8:84082784..84082795,+#_22a862300059ad214fc339272ae5044d | p@chr8:84082784..84082795, + |
| 4.15e-64 | FFCP PHASE2:Mm9::chr7:31935025..31935037,+#_22a862300059ad214fc339272ae5044d | p@chr7:31935025..31935037, + |
| 4.15e-64 | FFCP PHASE1:Mm9::chr12:74704873..74704900,+#_22a862300059ad214fc339272ae5044d | p@chr12:74704873..74704900, + |
| 4.15e-64 | FFCP PHASE1:Mm9::chr5:123440486..123440504,-#_22a862300059ad214fc339272ae5044d | p@chr5:123440486..123440504, - |
| 4.15e-64 | FFCP PHASE2:Mm9::chr8:84082784..84082795,+#_22a862300059ad214fc339272ae5044d | p@chr8:84082784..84082795, + |
| 4.15e-64 | FFCP PHASE2:Mm9::chr5:123440486..123440504,-#_22a862300059ad214fc339272ae5044d | p@chr5:123440486..123440504, - |
| 4.15e-64 | FFCP PHASE1:Mm9::chr14:56207154..56207165,-#_22a862300059ad214fc339272ae5044d | p@chr14:56207154..56207165, - |
| 4.17e-64 | FFCP PHASE2:Hg19::chr5:35856882..35856909,-#_99d53a24ee9b894ec2a8af68fd29aad7 | p@chr5:35856882..35856909, - |
| 4.17e-64 | FFCP PHASE1:Hg19::chr5:35856882..35856909,-#_99d53a24ee9b894ec2a8af68fd29aad7 | p@chr5:35856882..35856909, - |
| 4.91e-64 | FFCP PHASE2:Mm9::chr5:123440767..123440778,+#_766fdfbe19620f2ec017494642b4e5e2 | p@chr5:123440767..123440778, + |
| 4.91e-64 | FFCP PHASE1:Mm9::chr4:32422919..32422935,+#_766fdfbe19620f2ec017494642b4e5e2 | p@chr4:32422919..32422935, + |
| 4.91e-64 | FFCP PHASE2:Mm9::chr4:32422919..32422935,+#_766fdfbe19620f2ec017494642b4e5e2 | p@chr4:32422919..32422935, + |
| 4.91e-64 | FFCP PHASE1:Mm9::chr14:54838649..54838660,+#_766fdfbe19620f2ec017494642b4e5e2 | p@chr14:54838649..54838660, + |
| 4.91e-64 | FFCP PHASE1:Mm9::chr5:123440767..123440778,+#_766fdfbe19620f2ec017494642b4e5e2 | p@chr5:123440767..123440778, + |
| 4.91e-64 | FFCP PHASE2:Mm9::chr14:54838649..54838660,+#_766fdfbe19620f2ec017494642b4e5e2 | p@chr14:54838649..54838660, + |
| 5.81e-64 | FFCP PHASE2:Mm9::chr15:27786221..27786240,-#_24afa4d0e415097e0c7a89e7980771b1 | p@chr15:27786221..27786240, - |
| 5.81e-64 | FFCP PHASE1:Mm9::chr15:27786221..27786240,-#_24afa4d0e415097e0c7a89e7980771b1 | p@chr15:27786221..27786240, - |
| 5.87e-64 | FFCP PHASE2:Hg19::chr2:98330009..98330020,+#_30f32253b7202840cab0e438ea1b83c3 | p3@ZAP70 |
| 5.87e-64 | FFCP PHASE1:Hg19::chr2:98330009..98330020,+#_30f32253b7202840cab0e438ea1b83c3 | p3@ZAP70 |
| 6.87e-64 | FFCP PHASE2:Mm9::chr6:99215016..99215036,+#_c5b38440e25630d713c506421eda4a07 | p@chr6:99215016..99215036, + |
| 6.87e-64 | FFCP PHASE1:Mm9::chr6:99215016..99215036,+#_c5b38440e25630d713c506421eda4a07 | p@chr6:99215016..99215036, + |
| 6.87e-64 | FFCP PHASE2:Mm9::chr3:103672068..103672090,-#_c5b38440e25630d713c506421eda4a07 | p@chr3:103672068..103672090, - |
| 6.87e-64 | FFCP PHASE1:Mm9::chr3:103672068..103672090,-#_c5b38440e25630d713c506421eda4a07 | p@chr3:103672068..103672090, - |
| 7.69e-64 | FFCP PHASE2:Mm9::chr1:108608936..108608961,-#_3f4f9569fd7a3dc99b2dd6f784fcb457 | p@chr1:108608936..108608961, - |
| 7.69e-64 | FFCP PHASE1:Mm9::chr1:108608936..108608961,-#_3f4f9569fd7a3dc99b2dd6f784fcb457 | p@chr1:108608936..108608961, - |
| 8.12e-64 | FFCP PHASE2:Mm9::chr6:48634453..48634468,-#_dc44f20f132e6869a079fed164df5b26 | p@chr6:48634453..48634468, - |
| 8.12e-64 | FFCP PHASE1:Mm9::chr6:48634453..48634468,-#_dc44f20f132e6869a079fed164df5b26 | p@chr6:48634453..48634468, - |
| 1.13e-63 | FFCP PHASE1:Mm9::chr15:60018823..60018838,-#_4b753df3aef00ebc1881f057a2e0a6d3 | p5@uc007vxz.1 |
| 1.13e-63 | FFCP PHASE2:Mm9::chr15:60018823..60018838,-#_4b753df3aef00ebc1881f057a2e0a6d3 | p5@uc007vxz.1 |
| 1.59e-63 | FFCP PHASE1:Mm9::chr7:132751140..132751183,+#_8fdf561768c7970ab97690e00fa05c37 | p@chr7:132751140..132751183, + |
| 1.59e-63 | FFCP PHASE2:Mm9::chr7:132751140..132751183,+#_8fdf561768c7970ab97690e00fa05c37 | p@chr7:132751140..132751183, + |
| 4.29e-63 | FFCP PHASE1:Mm9::chr5:123439274..123439290,+#_f41d676474f7827234a2ac37688c5b27 | p4@ENSMUST00000148466, p4@uc008zmw.1 |
| 4.29e-63 | FFCP PHASE1:Mm9::chr4:155405070..155405083,+#_f41d676474f7827234a2ac37688c5b27 | p@chr4:155405070..155405083, + |
| 4.29e-63 | FFCP PHASE1:Mm9::chr6:99045597..99045607,-#_f41d676474f7827234a2ac37688c5b27 | p@chr6:99045597..99045607, - |
| 4.29e-63 | FFCP PHASE2:Mm9::chr1:140069290..140069308,+#_f41d676474f7827234a2ac37688c5b27 | p@chr1:140069290..140069308, + |
| 4.29e-63 | FFCP PHASE1:Mm9::chr11:46200242..46200255,+#_f41d676474f7827234a2ac37688c5b27 | p@chr11:46200242..46200255, + |
| 4.29e-63 | FFCP PHASE1:Mm9::chr9:32539732..32539750,+#_f41d676474f7827234a2ac37688c5b27 | p@chr9:32539732..32539750, + |
| 4.29e-63 | FFCP PHASE1:Mm9::chr4:155396384..155396395,-#_f41d676474f7827234a2ac37688c5b27 | p@chr4:155396384..155396395, - |
| 4.29e-63 | FFCP PHASE1:Mm9::chr4:6830911..6830925,-#_f41d676474f7827234a2ac37688c5b27 | p@chr4:6830911..6830925, - |
| 4.29e-63 | FFCP PHASE2:Mm9::chr1:167720341..167720362,+#_f41d676474f7827234a2ac37688c5b27 | p@chr1:167720341..167720362, + |
| 4.29e-63 | FFCP PHASE1:Mm9::chr6:125215605..125215616,+#_f41d676474f7827234a2ac37688c5b27 | p3@4930417O13Rik |
