CL:0002598: Difference between revisions
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|obo_creation_date=2011-03-06T05:46:39Z | |obo_creation_date=2011-03-06T05:46:39Z | ||
|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 17:28, 26 June 2012
| Name: | bronchial smooth muscle cell | ||
|---|---|---|---|
| Namespace: | cell | ||
| Xrefs: |
| ||
| Created by: | tmeehan | ||
| Creation date: | 2011-03-06T05:46:39Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000192(smooth muscle cell) |
|---|
Children
| derives from: | FF:0000179 (human bronchial smooth muscle cell sample) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11512-119G9 (Smooth Muscle Cells - Bronchial, donor1)
- 11592-120G8 (Smooth Muscle Cells - Bronchial, donor2)
Mouse (Mus musculus)
- 11512-119G9 (Smooth Muscle Cells - Bronchial, donor1)
- 11592-120G8 (Smooth Muscle Cells - Bronchial, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002598 (bronchial smooth muscle cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.59e-34 | FFCP PHASE2:Hg19::chr16:72107139..72107149,+#_c30b27e8aed044ff98a8873d49e11bcd | p@chr16:72107139..72107149, + |
| 2.59e-34 | FFCP PHASE1:Hg19::chr16:72107139..72107149,+#_c30b27e8aed044ff98a8873d49e11bcd | p@chr16:72107139..72107149, + |
| 7.05e-34 | FFCP PHASE1:Hg19::chr17:76824975..76824978,-#_de64e7224258f062346d2552699aa86e | p@chr17:76824975..76824978, - |
| 7.05e-34 | FFCP PHASE2:Hg19::chr17:76824975..76824978,-#_de64e7224258f062346d2552699aa86e | p@chr17:76824975..76824978, - |
| 8.39e-34 | FFCP PHASE1:Hg19::chr17:59479934..59479943,+#_f77138cceb472ab7067a97f7c3b52350 | p@chr17:59479934..59479943, + |
| 8.39e-34 | FFCP PHASE2:Hg19::chr17:59479934..59479943,+#_f77138cceb472ab7067a97f7c3b52350 | p@chr17:59479934..59479943, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr17:59533618..59533656,+#_dc0db6bdf6e3d8f1126fdbc9295950c2 | p2@TBX4 |
| 7.14e-26 | FFCP PHASE1:Hg19::chr6:134210772..134210782,+#_dc0db6bdf6e3d8f1126fdbc9295950c2 | p8@TCF21 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr6:134210772..134210782,+#_dc0db6bdf6e3d8f1126fdbc9295950c2 | p8@TCF21 |
| 7.14e-26 | FFCP PHASE1:Hg19::chr17:59533618..59533656,+#_dc0db6bdf6e3d8f1126fdbc9295950c2 | p2@TBX4 |
| 9.18e-26 | FFCP PHASE1:Hg19::chr2:191834349..191834358,-#_6eb3e94d09e66947388c258743505dd6 | p@chr2:191834349..191834358, - |
| 9.18e-26 | FFCP PHASE2:Hg19::chr2:191834349..191834358,-#_6eb3e94d09e66947388c258743505dd6 | p@chr2:191834349..191834358, - |
| 2.08e-21 | FFCP PHASE2:Hg19::chr17:46671154..46671167,-#_8788fcbc311caa4b719e751f4c2b92c1 | p4@HOXB5 |
| 2.08e-21 | FFCP PHASE1:Hg19::chr17:46671154..46671167,-#_8788fcbc311caa4b719e751f4c2b92c1 | p4@HOXB5 |
| 5.48e-18 | FFCP PHASE2:Hg19::chr7:143079562..143079573,+#_692e09de780cf9b725b928f837efcd92 | p39@ZYX |
| 5.48e-18 | FFCP PHASE1:Hg19::chr7:143079562..143079573,+#_692e09de780cf9b725b928f837efcd92 | p39@ZYX |
| 5.82e-18 | FFCP PHASE1:Hg19::chr12:114845834..114845848,-#_61bd635bcb707e468f5bbfd6078efe71 | p5@TBX5 |
| 5.82e-18 | FFCP PHASE2:Hg19::chr12:114845834..114845848,-#_61bd635bcb707e468f5bbfd6078efe71 | p5@TBX5 |
| 1.27e-17 | FFCP PHASE1:Hg19::chr15:33384561..33384569,-#_934857aadc4ffab3b77c504a6b7c37b7 | p@chr15:33384561..33384569, - |
| 1.27e-17 | FFCP PHASE2:Hg19::chr15:33384561..33384569,-#_934857aadc4ffab3b77c504a6b7c37b7 | p@chr15:33384561..33384569, - |
| 3.1e-17 | FFCP PHASE2:Hg19::chr15:33384583..33384602,-#_da2830665bea9107a9c5213714edc15f | p@chr15:33384583..33384602, - |
| 3.1e-17 | FFCP PHASE1:Hg19::chr15:33384583..33384602,-#_da2830665bea9107a9c5213714edc15f | p@chr15:33384583..33384602, - |
| 7.31e-16 | FFCP PHASE2:Hg19::chr17:46670845..46670856,-#_c6c4986fa790b94098160235799b4868 | p8@AB464575 |
| 7.31e-16 | FFCP PHASE1:Hg19::chr17:46670845..46670856,-#_c6c4986fa790b94098160235799b4868 | p8@AB464575 |
| 1.33e-15 | FFCP PHASE2:Hg19::chr3:123518853..123518862,-#_9b6b7bf4b57bb356c36dd0db47772ac4 | p48@MYLK |
| 1.33e-15 | FFCP PHASE1:Hg19::chr3:123518853..123518862,-#_9b6b7bf4b57bb356c36dd0db47772ac4 | p48@MYLK |
| 2.05e-15 | FFCP PHASE1:Hg19::chr2:102511066..102511072,+#_b2fc6cefc002571722e0fa2133931ca4 | p@chr2:102511066..102511072, + |
| 2.05e-15 | FFCP PHASE2:Hg19::chr2:102511066..102511072,+#_b2fc6cefc002571722e0fa2133931ca4 | p@chr2:102511066..102511072, + |
| 2.74e-15 | FFCP PHASE1:Hg19::chr20:257430..257434,-#_491afed082978eb86647e6fa1778f085 | p@chr20:257430..257434, - |
| 2.74e-15 | FFCP PHASE2:Hg19::chr20:257430..257434,-#_491afed082978eb86647e6fa1778f085 | p@chr20:257430..257434, - |
| 9.74e-15 | FFCP PHASE1:Hg19::chr22:41957054..41957063,+#_d1145f609feafd56448a8eead87feb7e | p4@CSDC2 |
| 9.74e-15 | FFCP PHASE2:Hg19::chr22:41957054..41957063,+#_d1145f609feafd56448a8eead87feb7e | p4@CSDC2 |
| 1.04e-14 | FFCP PHASE1:Hg19::chr3:123518925..123518939,-#_c2ac64fc0cdf1fc51cf57af3ae926bfc | p29@MYLK |
| 1.04e-14 | FFCP PHASE2:Hg19::chr3:123518925..123518939,-#_c2ac64fc0cdf1fc51cf57af3ae926bfc | p29@MYLK |
| 7.3e-14 | FFCP PHASE1:Hg19::chr7:87835758..87835769,-#_95f9da18971dc5c7a291f675f4eea0a3 | p6@SRI |
| 7.3e-14 | FFCP PHASE2:Hg19::chr7:87835758..87835769,-#_95f9da18971dc5c7a291f675f4eea0a3 | p6@SRI |
| 9.4e-14 | FFCP PHASE2:Hg19::chr15:33384526..33384543,-#_0e19b6f8f41a3b4cfcdb9059afe7a5c8 | p@chr15:33384526..33384543, - |
| 9.4e-14 | FFCP PHASE1:Hg19::chr15:33384526..33384543,-#_0e19b6f8f41a3b4cfcdb9059afe7a5c8 | p@chr15:33384526..33384543, - |
| 1.37e-13 | FFCP PHASE1:Hg19::chr17:38324198..38324204,+#_24fd3e2307a1da90410283ced762e891 | p7@CASC3 |
| 1.37e-13 | FFCP PHASE2:Hg19::chr17:38324198..38324204,+#_24fd3e2307a1da90410283ced762e891 | p7@CASC3 |
| 1.55e-13 | FFCP PHASE1:Hg19::chr19:36245514..36245521,-#_8d4fcee79aa38b49d361f855f1c3be2b | p6@CU679244 |
| 1.55e-13 | FFCP PHASE2:Hg19::chr19:36245514..36245521,-#_8d4fcee79aa38b49d361f855f1c3be2b | p6@CU679244 |
| 2.12e-13 | FFCP PHASE2:Hg19::chr12:114845970..114846000,+#_5450ee8d99625df4394bae1e909482ec | p1@LOC255480 |
| 2.12e-13 | FFCP PHASE1:Hg19::chr12:114845970..114846000,+#_5450ee8d99625df4394bae1e909482ec | p1@LOC255480 |
| 3.9e-13 | FFCP PHASE1:Hg19::chr5:92923453..92923465,+#_b2f2de79bcdfc275cfe5e0813323fe2b | p@chr5:92923453..92923465, + |
| 3.9e-13 | FFCP PHASE2:Hg19::chr5:92923453..92923465,+#_b2f2de79bcdfc275cfe5e0813323fe2b | p@chr5:92923453..92923465, + |
| 4.89e-12 | FFCP PHASE1:Hg19::chr17:46670939..46670958,-#_618a6948d8785c803b75d31e831ab1e8 | p5@AB464575 |
| 4.89e-12 | FFCP PHASE2:Hg19::chr17:46670939..46670958,-#_618a6948d8785c803b75d31e831ab1e8 | p5@AB464575 |
| 6.49e-12 | FFCP PHASE2:Hg19::chr12:114845810..114845824,-#_103d8ca428ebae617fd5f7d46230b3a3 | p1@TBX5 |
| 6.49e-12 | FFCP PHASE1:Hg19::chr12:114845810..114845824,-#_103d8ca428ebae617fd5f7d46230b3a3 | p1@TBX5 |
| 6.89e-12 | FFCP PHASE1:Hg19::chr3:123518900..123518913,-#_8c6fd28ddf1a60231d5e8b21327f4891 | p18@MYLK |
| 6.89e-12 | FFCP PHASE2:Hg19::chr3:123518900..123518913,-#_8c6fd28ddf1a60231d5e8b21327f4891 | p18@MYLK |
| 1.38e-11 | FFCP PHASE2:Hg19::chr16:67313160..67313175,-#_41e0b69325a56ab133f0042c02ea3a46 | p@chr16:67313160..67313175, - |
| 1.38e-11 | FFCP PHASE1:Hg19::chr16:67313160..67313175,-#_41e0b69325a56ab133f0042c02ea3a46 | p@chr16:67313160..67313175, - |
| 1.42e-11 | FFCP PHASE1:Hg19::chr17:46627597..46627646,+#_685745156d6e21097ff92c4e08479297 | p@chr17:46627597..46627646, + |
| 1.42e-11 | FFCP PHASE2:Hg19::chr17:46627597..46627646,+#_685745156d6e21097ff92c4e08479297 | p@chr17:46627597..46627646, + |
| 1.81e-11 | FFCP PHASE1:Hg19::chr3:123519062..123519090,-#_959c437e54486fbb71e80a2e1ee480a1 | p14@MYLK |
| 1.81e-11 | FFCP PHASE2:Hg19::chr3:123519062..123519090,-#_959c437e54486fbb71e80a2e1ee480a1 | p14@MYLK |
| 2.02e-11 | FFCP PHASE1:Hg19::chr17:59479775..59479790,+#_9ae09460059fffd47583bb4be6e6cde9 | p@chr17:59479775..59479790, + |
| 2.02e-11 | FFCP PHASE2:Hg19::chr17:59479775..59479790,+#_9ae09460059fffd47583bb4be6e6cde9 | p@chr17:59479775..59479790, + |
| 2.23e-11 | FFCP PHASE1:Hg19::chr6:56013664..56013696,-#_707fc5dcfa9f8c5a551e044bdc06537b | p@chr6:56013664..56013696, - |
| 2.23e-11 | FFCP PHASE2:Hg19::chr6:56013664..56013696,-#_707fc5dcfa9f8c5a551e044bdc06537b | p@chr6:56013664..56013696, - |
| 3.46e-11 | FFCP PHASE1:Hg19::chr3:45067642..45067645,+#_62842d21637905fa1da919a762f6de41 | p7@CLEC3B |
| 3.46e-11 | FFCP PHASE2:Hg19::chr3:45067642..45067645,+#_62842d21637905fa1da919a762f6de41 | p7@CLEC3B |
| 3.7e-11 | FFCP PHASE1:Hg19::chr6:90378042..90378060,-#_5b446bf724e7ea88e9a07d9a98df57fa | p@chr6:90378042..90378060, - |
| 3.7e-11 | FFCP PHASE2:Hg19::chr6:90378042..90378060,-#_5b446bf724e7ea88e9a07d9a98df57fa | p@chr6:90378042..90378060, - |
| 4.09e-11 | FFCP PHASE1:Hg19::chr6:90378015..90378029,-#_c26d2c1fb6c9b300c7ca6b12a2ae94df | p@chr6:90378015..90378029, - |
| 4.09e-11 | FFCP PHASE2:Hg19::chr6:90378015..90378029,-#_c26d2c1fb6c9b300c7ca6b12a2ae94df | p@chr6:90378015..90378029, - |
| 4.52e-11 | FFCP PHASE1:Hg19::chr17:59474831..59474844,+#_13b233d3940227333128a8c612ad097d | p@chr17:59474831..59474844, + |
| 4.52e-11 | FFCP PHASE2:Hg19::chr17:59474831..59474844,+#_13b233d3940227333128a8c612ad097d | p@chr17:59474831..59474844, + |
| 1.59e-10 | FFCP PHASE1:Hg19::chr3:123518799..123518836,-#_e7fe299f65e7be8f3a09ff95f4d7e2d4 | p16@MYLK |
| 1.59e-10 | FFCP PHASE2:Hg19::chr3:123518799..123518836,-#_e7fe299f65e7be8f3a09ff95f4d7e2d4 | p16@MYLK |
| 1.76e-10 | FFCP PHASE1:Hg19::chr17:59529743..59529798,+#_c29db4dcc10b61deafcaab512966fd0d | p1@TBX4 |
| 1.76e-10 | FFCP PHASE2:Hg19::chr17:59529743..59529798,+#_c29db4dcc10b61deafcaab512966fd0d | p1@TBX4 |
| 1.89e-10 | FFCP PHASE2:Hg19::chr12:10856713..10856723,-#_4a44782d449e1a008d0a83cd700ca4f6 | p23@CSDA |
| 1.89e-10 | FFCP PHASE1:Hg19::chr7:128499262..128499273,+#_4a44782d449e1a008d0a83cd700ca4f6 | p@chr7:128499262..128499273, + |
| 1.89e-10 | FFCP PHASE1:Hg19::chr12:10856713..10856723,-#_4a44782d449e1a008d0a83cd700ca4f6 | p23@CSDA |
| 1.89e-10 | FFCP PHASE2:Hg19::chr7:128499262..128499273,+#_4a44782d449e1a008d0a83cd700ca4f6 | p@chr7:128499262..128499273, + |
| 2.32e-10 | FFCP PHASE1:Hg19::chr21:47648451..47648462,-#_181f2992652067745ae76bcac8ae2053 | p3@LSS |
| 2.32e-10 | FFCP PHASE2:Hg19::chr21:47648451..47648462,-#_181f2992652067745ae76bcac8ae2053 | p3@LSS |
| 2.49e-10 | FFCP PHASE1:Hg19::chr11:114121964..114121973,+#_f65813ab080a7c8e839218ac570d5f91 | p@chr11:114121964..114121973, + |
| 2.49e-10 | FFCP PHASE2:Hg19::chr11:114121964..114121973,+#_f65813ab080a7c8e839218ac570d5f91 | p@chr11:114121964..114121973, + |
| 2.72e-10 | FFCP PHASE1:Hg19::chr2:47452905..47452914,+#_aa2f36d5bf51940de85a884601ec3b44 | p1@ENST00000444361 |
| 2.72e-10 | FFCP PHASE2:Hg19::chr2:47452905..47452914,+#_aa2f36d5bf51940de85a884601ec3b44 | p1@ENST00000444361 |
| 3.58e-10 | FFCP PHASE1:Hg19::chr4:1160761..1160774,-#_9279f2b1054a4b8afb9c75f810eb315e | p@chr4:1160761..1160774, - |
| 3.58e-10 | FFCP PHASE2:Hg19::chr4:1160761..1160774,-#_9279f2b1054a4b8afb9c75f810eb315e | p@chr4:1160761..1160774, - |
| 3.91e-10 | FFCP PHASE1:Hg19::chr17:46675344..46675355,-#_4e4ccc6a13d39cc1ff0951cc8dc8d430 | p9@HOXB6 |
| 3.91e-10 | FFCP PHASE2:Hg19::chr17:46675344..46675355,-#_4e4ccc6a13d39cc1ff0951cc8dc8d430 | p9@HOXB6 |
| 4.17e-10 | FFCP PHASE2:Hg19::chr15:74218799..74218816,-#_d3fdf38b16a87b6f54baa9fe517fbacb | p@chr15:74218799..74218816, - |
| 4.17e-10 | FFCP PHASE1:Hg19::chr15:74218799..74218816,-#_d3fdf38b16a87b6f54baa9fe517fbacb | p@chr15:74218799..74218816, - |
| 9.82e-10 | FFCP PHASE2:Hg19::chr11:307929..307961,+#_6a91d09f15f287472d8c5f90470877b3 | p4@IFITM2 |
| 9.82e-10 | FFCP PHASE1:Hg19::chr11:307929..307961,+#_6a91d09f15f287472d8c5f90470877b3 | p4@IFITM2 |
| 1.02e-9 | FFCP PHASE1:Hg19::chr17:46630377..46630385,+#_cba8b711b84cda94f3441038417622fd | p@chr17:46630377..46630385, + |
| 1.02e-9 | FFCP PHASE2:Hg19::chr17:46630377..46630385,+#_cba8b711b84cda94f3441038417622fd | p@chr17:46630377..46630385, + |
| 1.33e-9 | FFCP PHASE2:Hg19::chr12:7187819..7187830,-#_8a631c98d577f956e588dfdeb4f7a985 | p@chr12:7187819..7187830, - |
| 1.33e-9 | FFCP PHASE1:Hg19::chr12:7187819..7187830,-#_8a631c98d577f956e588dfdeb4f7a985 | p@chr12:7187819..7187830, - |
| 1.44e-9 | FFCP PHASE2:Hg19::chr5:149425247..149425250,+#_ab2ca92cbfbd14bc247d91b5f85683a5 | p@chr5:149425247..149425250, + |
| 1.44e-9 | FFCP PHASE1:Hg19::chr5:149425247..149425250,+#_ab2ca92cbfbd14bc247d91b5f85683a5 | p@chr5:149425247..149425250, + |
| 1.46e-9 | FFCP PHASE2:Hg19::chr17:46671504..46671541,-#_3f62023cab122f0a3a3cc6ac690d0d43 | p2@HOXB5 |
| 1.46e-9 | FFCP PHASE1:Hg19::chr17:46671504..46671541,-#_3f62023cab122f0a3a3cc6ac690d0d43 | p2@HOXB5 |
