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|id=CL:0002425
|id=CL:0002425
|name=early T lineage precursor
|name=early T lineage precursor
|namespace=efo
|namespace=cell;;efo
|def="A pro-T cell that is lin-negative, CD25-negative, CD127-negative, CD44-positive and kit-positive." [GOC:dsd, GOC:tfm, http://www.immgen.org/index_content.html, PMID:16551251]
|def="A pro-T cell that is lin-negative, CD25-negative, CD127-negative, CD44-positive and kit-positive." [GOC:dsd, GOC:tfm, http://www.immgen.org/index_content.html, PMID:16551251]
|xref=
|xref=
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|obo_creation_date=2010-10-21T01:16:24Z
|obo_creation_date=2010-10-21T01:16:24Z
|subset=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
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|located_in=
|located_in=
|part_of=
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.obo.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|is_obsolete=
|is_obsolete=
|preceded_by=
|preceded_by=
}}
}}

Revision as of 17:27, 26 June 2012

Name:early T lineage precursor
Namespace:cell;;efo
Definition:"A pro-T cell that is lin-negative, CD25-negative, CD127-negative, CD44-positive and kit-positive." [GOC:dsd, GOC:tfm, http://www.immgen.org/index_content.html, PMID:16551251]
Synonyms: "ETP" EXACT []
"preT.ETP.Th" EXACT []
Comments:ETPs are reportedly CD1a-negative, CD4-negative, CD7-positive, CD8a-negative, CD8b-negative, CD33-low, CD34-high, CD38-low, CD45RA-positive, and CD45RO-negative.
Created by:tmeehan
Creation date:2010-10-21T01:16:24Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000827(pro-T cell)



Children


develops from:CL:0000894 (DN1 thymic pro-T cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.



Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002425 (early T lineage precursor), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.29e-195FFCP PHASE2:Hg19::chr2:162762361..162762364,+#_6309f32b9af901ce7a84e0a56a0f5f07p@chr2:162762361..162762364, +
3.29e-195FFCP PHASE1:Hg19::chr2:162762361..162762364,+#_6309f32b9af901ce7a84e0a56a0f5f07p@chr2:162762361..162762364, +
1.55e-98FFCP PHASE2:Hg19::chr8:50081052..50081075,-#_d09fc33dca7230bb66606ffe21c3ca28p@chr8:50081052..50081075, -
1.55e-98FFCP PHASE2:Hg19::chr13:24623546..24623587,-#_d09fc33dca7230bb66606ffe21c3ca28p@chr13:24623546..24623587, -
1.55e-98FFCP PHASE2:Hg19::chr4:2428062..2428080,+#_d09fc33dca7230bb66606ffe21c3ca28p1@uc003gfa.1
1.55e-98FFCP PHASE2:Hg19::chr3:192598433..192598481,-#_d09fc33dca7230bb66606ffe21c3ca28p@chr3:192598433..192598481, -
1.55e-98FFCP PHASE2:Hg19::chr2:146998057..146998070,-#_d09fc33dca7230bb66606ffe21c3ca28p@chr2:146998057..146998070, -
1.55e-98FFCP PHASE1:Hg19::chr15:91989133..91989141,+#_d09fc33dca7230bb66606ffe21c3ca28p@chr15:91989133..91989141, +
1.55e-98FFCP PHASE2:Hg19::chrX:133321044..133321049,+#_d09fc33dca7230bb66606ffe21c3ca28p@chrX:133321044..133321049, +
1.55e-98FFCP PHASE2:Hg19::chr4:176123823..176123829,+#_d09fc33dca7230bb66606ffe21c3ca28p@chr4:176123823..176123829, +
1.55e-98FFCP PHASE1:Hg19::chr14:22962827..22962830,+#_d09fc33dca7230bb66606ffe21c3ca28p3@uc001weo.2
1.55e-98FFCP PHASE1:Hg19::chr2:162762231..162762234,+#_d09fc33dca7230bb66606ffe21c3ca28p@chr2:162762231..162762234, +
1.55e-98FFCP PHASE1:Hg19::chr7:38287827..38287832,-#_d09fc33dca7230bb66606ffe21c3ca28p@chr7:38287827..38287832, -
1.55e-98FFCP PHASE2:Hg19::chr4:134707474..134707504,-#_d09fc33dca7230bb66606ffe21c3ca28p@chr4:134707474..134707504, -
1.55e-98FFCP PHASE2:Hg19::chr7:117926347..117926353,-#_d09fc33dca7230bb66606ffe21c3ca28p@chr7:117926347..117926353, -
1.55e-98FFCP PHASE1:Hg19::chr7:19479837..19479844,+#_d09fc33dca7230bb66606ffe21c3ca28p@chr7:19479837..19479844, +
1.55e-98FFCP PHASE2:Hg19::chr9:72117884..72117889,-#_d09fc33dca7230bb66606ffe21c3ca28p@chr9:72117884..72117889, -
1.55e-98FFCP PHASE2:Hg19::chr4:133657589..133657598,-#_d09fc33dca7230bb66606ffe21c3ca28p@chr4:133657589..133657598, -
1.55e-98FFCP PHASE1:Hg19::chr4:175858389..175858405,-#_d09fc33dca7230bb66606ffe21c3ca28p@chr4:175858389..175858405, -
1.55e-98FFCP PHASE2:Hg19::chr16:67022522..67022529,+#_d09fc33dca7230bb66606ffe21c3ca28p12@CES4A
1.55e-98FFCP PHASE1:Hg19::chr9:87797549..87797564,+#_d09fc33dca7230bb66606ffe21c3ca28p@chr9:87797549..87797564, +
1.55e-98FFCP PHASE1:Hg19::chr4:134707420..134707442,-#_d09fc33dca7230bb66606ffe21c3ca28p@chr4:134707420..134707442, -
1.55e-98FFCP PHASE2:Hg19::chr15:91989101..91989105,+#_d09fc33dca7230bb66606ffe21c3ca28p@chr15:91989101..91989105, +
1.55e-98FFCP PHASE2:Hg19::chr13:49078833..49078841,-#_d09fc33dca7230bb66606ffe21c3ca28p@chr13:49078833..49078841, -
1.55e-98FFCP PHASE1:Hg19::chr8:51970952..51970959,+#_d09fc33dca7230bb66606ffe21c3ca28p@chr8:51970952..51970959, +
1.55e-98FFCP PHASE2:Hg19::chr4:175842511..175842520,-#_d09fc33dca7230bb66606ffe21c3ca28p@chr4:175842511..175842520, -
1.55e-98FFCP PHASE2:Hg19::chr3:152204326..152204345,+#_d09fc33dca7230bb66606ffe21c3ca28p@chr3:152204326..152204345, +
1.55e-98FFCP PHASE1:Hg19::chr9:116857558..116857566,-#_d09fc33dca7230bb66606ffe21c3ca28p@chr9:116857558..116857566, -
1.55e-98FFCP PHASE1:Hg19::chr2:202521027..202521058,-#_d09fc33dca7230bb66606ffe21c3ca28p@chr2:202521027..202521058, -
1.55e-98FFCP PHASE2:Hg19::chr4:111448516..111448521,+#_d09fc33dca7230bb66606ffe21c3ca28p@chr4:111448516..111448521, +
1.55e-98FFCP PHASE2:Hg19::chr21:47278815..47278834,+#_d09fc33dca7230bb66606ffe21c3ca28p6@PCBP3
1.55e-98FFCP PHASE1:Hg19::chr15:92006659..92006679,+#_d09fc33dca7230bb66606ffe21c3ca28p2@uc002bqw.2
1.55e-98FFCP PHASE1:Hg19::chr16:67022522..67022529,+#_d09fc33dca7230bb66606ffe21c3ca28p12@CES4A
1.55e-98FFCP PHASE2:Hg19::chr1:189141918..189141929,+#_d09fc33dca7230bb66606ffe21c3ca28p@chr1:189141918..189141929, +
1.55e-98FFCP PHASE2:Hg19::chr8:67519931..67519935,-#_d09fc33dca7230bb66606ffe21c3ca28p@chr8:67519931..67519935, -
1.55e-98FFCP PHASE2:Hg19::chr15:69972162..69972169,+#_d09fc33dca7230bb66606ffe21c3ca28p@chr15:69972162..69972169, +
1.55e-98FFCP PHASE2:Hg19::chr6:128263833..128263838,-#_d09fc33dca7230bb66606ffe21c3ca28p@chr6:128263833..128263838, -
1.55e-98FFCP PHASE1:Hg19::chr2:146687090..146687095,+#_d09fc33dca7230bb66606ffe21c3ca28p@chr2:146687090..146687095, +
1.55e-98FFCP PHASE1:Hg19::chr13:24623546..24623587,-#_d09fc33dca7230bb66606ffe21c3ca28p@chr13:24623546..24623587, -
1.55e-98FFCP PHASE2:Hg19::chr4:133657651..133657654,-#_d09fc33dca7230bb66606ffe21c3ca28p@chr4:133657651..133657654, -
1.55e-98FFCP PHASE2:Hg19::chr1:237900222..237900230,+#_d09fc33dca7230bb66606ffe21c3ca28p@chr1:237900222..237900230, +
1.55e-98FFCP PHASE2:Hg19::chr22:46041912..46041915,+#_d09fc33dca7230bb66606ffe21c3ca28p@chr22:46041912..46041915, +
1.55e-98FFCP PHASE1:Hg19::chr8:16739475..16739490,-#_d09fc33dca7230bb66606ffe21c3ca28p@chr8:16739475..16739490, -
1.55e-98FFCP PHASE2:Hg19::chr10:11846830..11846860,-#_d09fc33dca7230bb66606ffe21c3ca28p@chr10:11846830..11846860, -
1.55e-98FFCP PHASE1:Hg19::chr21:47278815..47278834,+#_d09fc33dca7230bb66606ffe21c3ca28p6@PCBP3
1.55e-98FFCP PHASE2:Hg19::chr4:105805755..105805761,+#_d09fc33dca7230bb66606ffe21c3ca28p@chr4:105805755..105805761, +
1.55e-98FFCP PHASE1:Hg19::chr4:134707449..134707458,-#_d09fc33dca7230bb66606ffe21c3ca28p@chr4:134707449..134707458, -
1.55e-98FFCP PHASE2:Hg19::chr15:91989133..91989141,+#_d09fc33dca7230bb66606ffe21c3ca28p@chr15:91989133..91989141, +
1.55e-98FFCP PHASE1:Hg19::chr4:128884938..128884941,-#_d09fc33dca7230bb66606ffe21c3ca28p@chr4:128884938..128884941, -
1.55e-98FFCP PHASE2:Hg19::chr8:75251775..75251785,+#_d09fc33dca7230bb66606ffe21c3ca28p@chr8:75251775..75251785, +
1.55e-98FFCP PHASE2:Hg19::chr4:175842537..175842553,-#_d09fc33dca7230bb66606ffe21c3ca28p@chr4:175842537..175842553, -
1.55e-98FFCP PHASE1:Hg19::chr2:141989111..141989114,-#_d09fc33dca7230bb66606ffe21c3ca28p@chr2:141989111..141989114, -
1.55e-98FFCP PHASE1:Hg19::chr1:237900222..237900230,+#_d09fc33dca7230bb66606ffe21c3ca28p@chr1:237900222..237900230, +
1.55e-98FFCP PHASE2:Hg19::chr9:4544914..4544917,-#_d09fc33dca7230bb66606ffe21c3ca28p@chr9:4544914..4544917, -
1.55e-98FFCP PHASE1:Hg19::chr4:175842470..175842486,-#_d09fc33dca7230bb66606ffe21c3ca28p@chr4:175842470..175842486, -
1.55e-98FFCP PHASE1:Hg19::chr5:24272119..24272147,-#_d09fc33dca7230bb66606ffe21c3ca28p@chr5:24272119..24272147, -
1.55e-98FFCP PHASE1:Hg19::chr13:49078833..49078841,-#_d09fc33dca7230bb66606ffe21c3ca28p@chr13:49078833..49078841, -
1.55e-98FFCP PHASE1:Hg19::chr15:92006720..92006726,+#_d09fc33dca7230bb66606ffe21c3ca28p1@uc002bqw.2
1.55e-98FFCP PHASE1:Hg19::chr8:50081052..50081075,-#_d09fc33dca7230bb66606ffe21c3ca28p@chr8:50081052..50081075, -
1.55e-98FFCP PHASE2:Hg19::chr17:14101134..14101143,+#_d09fc33dca7230bb66606ffe21c3ca28p@chr17:14101134..14101143, +
1.55e-98FFCP PHASE1:Hg19::chr4:2428062..2428080,+#_d09fc33dca7230bb66606ffe21c3ca28p1@uc003gfa.1
1.55e-98FFCP PHASE1:Hg19::chr10:11846830..11846860,-#_d09fc33dca7230bb66606ffe21c3ca28p@chr10:11846830..11846860, -
1.55e-98FFCP PHASE1:Hg19::chr2:146998057..146998070,-#_d09fc33dca7230bb66606ffe21c3ca28p@chr2:146998057..146998070, -
1.55e-98FFCP PHASE1:Hg19::chr4:176123823..176123829,+#_d09fc33dca7230bb66606ffe21c3ca28p@chr4:176123823..176123829, +
1.55e-98FFCP PHASE1:Hg19::chr8:114877856..114877881,-#_d09fc33dca7230bb66606ffe21c3ca28p@chr8:114877856..114877881, -
1.55e-98FFCP PHASE2:Hg19::chr2:162762231..162762234,+#_d09fc33dca7230bb66606ffe21c3ca28p@chr2:162762231..162762234, +
1.55e-98FFCP PHASE2:Hg19::chr1:200990231..200990238,-#_d09fc33dca7230bb66606ffe21c3ca28p@chr1:200990231..200990238, -
1.55e-98FFCP PHASE2:Hg19::chr7:38287827..38287832,-#_d09fc33dca7230bb66606ffe21c3ca28p@chr7:38287827..38287832, -
1.55e-98FFCP PHASE1:Hg19::chr4:134707474..134707504,-#_d09fc33dca7230bb66606ffe21c3ca28p@chr4:134707474..134707504, -
1.55e-98FFCP PHASE2:Hg19::chr21:43982135..43982142,+#_d09fc33dca7230bb66606ffe21c3ca28p@chr21:43982135..43982142, +
1.55e-98FFCP PHASE1:Hg19::chr7:117926347..117926353,-#_d09fc33dca7230bb66606ffe21c3ca28p@chr7:117926347..117926353, -
1.55e-98FFCP PHASE1:Hg19::chr1:189141918..189141929,+#_d09fc33dca7230bb66606ffe21c3ca28p@chr1:189141918..189141929, +
1.55e-98FFCP PHASE2:Hg19::chr15:92006659..92006679,+#_d09fc33dca7230bb66606ffe21c3ca28p2@uc002bqw.2
1.55e-98FFCP PHASE1:Hg19::chr9:72117884..72117889,-#_d09fc33dca7230bb66606ffe21c3ca28p@chr9:72117884..72117889, -
1.55e-98FFCP PHASE2:Hg19::chr7:19479837..19479844,+#_d09fc33dca7230bb66606ffe21c3ca28p@chr7:19479837..19479844, +
1.55e-98FFCP PHASE1:Hg19::chr4:133657589..133657598,-#_d09fc33dca7230bb66606ffe21c3ca28p@chr4:133657589..133657598, -
1.55e-98FFCP PHASE2:Hg19::chr21:39490932..39490937,+#_d09fc33dca7230bb66606ffe21c3ca28p@chr21:39490932..39490937, +
1.55e-98FFCP PHASE2:Hg19::chr4:175858389..175858405,-#_d09fc33dca7230bb66606ffe21c3ca28p@chr4:175858389..175858405, -
1.55e-98FFCP PHASE1:Hg19::chr17:14101134..14101143,+#_d09fc33dca7230bb66606ffe21c3ca28p@chr17:14101134..14101143, +
1.55e-98FFCP PHASE2:Hg19::chr9:87797549..87797564,+#_d09fc33dca7230bb66606ffe21c3ca28p@chr9:87797549..87797564, +
1.55e-98FFCP PHASE2:Hg19::chr4:134707420..134707442,-#_d09fc33dca7230bb66606ffe21c3ca28p@chr4:134707420..134707442, -
1.55e-98FFCP PHASE1:Hg19::chr22:46041912..46041915,+#_d09fc33dca7230bb66606ffe21c3ca28p@chr22:46041912..46041915, +
1.55e-98FFCP PHASE2:Hg19::chr8:51970952..51970959,+#_d09fc33dca7230bb66606ffe21c3ca28p@chr8:51970952..51970959, +
1.55e-98FFCP PHASE1:Hg19::chr4:175842511..175842520,-#_d09fc33dca7230bb66606ffe21c3ca28p@chr4:175842511..175842520, -
1.55e-98FFCP PHASE1:Hg19::chr3:192598433..192598481,-#_d09fc33dca7230bb66606ffe21c3ca28p@chr3:192598433..192598481, -
1.55e-98FFCP PHASE2:Hg19::chr9:116857558..116857566,-#_d09fc33dca7230bb66606ffe21c3ca28p@chr9:116857558..116857566, -
1.55e-98FFCP PHASE2:Hg19::chr16:67022368..67022374,-#_d09fc33dca7230bb66606ffe21c3ca28p@chr16:67022368..67022374, -
1.55e-98FFCP PHASE1:Hg19::chr21:43982135..43982142,+#_d09fc33dca7230bb66606ffe21c3ca28p@chr21:43982135..43982142, +
1.55e-98FFCP PHASE1:Hg19::chrX:133321044..133321049,+#_d09fc33dca7230bb66606ffe21c3ca28p@chrX:133321044..133321049, +
1.55e-98FFCP PHASE1:Hg19::chr21:39490932..39490937,+#_d09fc33dca7230bb66606ffe21c3ca28p@chr21:39490932..39490937, +
1.55e-98FFCP PHASE1:Hg19::chr4:111448516..111448521,+#_d09fc33dca7230bb66606ffe21c3ca28p@chr4:111448516..111448521, +
1.55e-98FFCP PHASE2:Hg19::chr2:202521027..202521058,-#_d09fc33dca7230bb66606ffe21c3ca28p@chr2:202521027..202521058, -
1.55e-98FFCP PHASE2:Hg19::chr17:14103251..14103258,+#_d09fc33dca7230bb66606ffe21c3ca28p@chr17:14103251..14103258, +
1.55e-98FFCP PHASE2:Hg19::chr14:22962827..22962830,+#_d09fc33dca7230bb66606ffe21c3ca28p3@uc001weo.2
1.55e-98FFCP PHASE1:Hg19::chr8:67519931..67519935,-#_d09fc33dca7230bb66606ffe21c3ca28p@chr8:67519931..67519935, -
1.55e-98FFCP PHASE2:Hg19::chr15:92006720..92006726,+#_d09fc33dca7230bb66606ffe21c3ca28p1@uc002bqw.2
1.55e-98FFCP PHASE2:Hg19::chr2:146687090..146687095,+#_d09fc33dca7230bb66606ffe21c3ca28p@chr2:146687090..146687095, +
1.55e-98FFCP PHASE1:Hg19::chr4:133657651..133657654,-#_d09fc33dca7230bb66606ffe21c3ca28p@chr4:133657651..133657654, -
1.55e-98FFCP PHASE1:Hg19::chr15:91989101..91989105,+#_d09fc33dca7230bb66606ffe21c3ca28p@chr15:91989101..91989105, +
1.55e-98FFCP PHASE1:Hg19::chr3:152204326..152204345,+#_d09fc33dca7230bb66606ffe21c3ca28p@chr3:152204326..152204345, +

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