Personal tools

CL:0000239: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 14: Line 14:
|obo_creation_date=
|obo_creation_date=
|subset=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=

Revision as of 17:25, 26 June 2012

Name:brush border epithelial cell
Namespace:cell


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000075(columnar/cuboidal epithelial cell)



Children


is a:CL:0000584 (enterocyte),CL:0002306 (epithelial cell of proximal tubule)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

  • 11515-119H3 (Renal Proximal Tubular Epithelial Cell, donor1)
  • 11595-120H2 (Renal Proximal Tubular Epithelial Cell, donor2)
  • 11676-122H2 (Renal Proximal Tubular Epithelial Cell, donor3)
  • 11848-124I3 (CD326+ enterocyte, pool1)
  • 11849-124I4 (CD326+ enterocyte, pool2)
  • 11850-124I5 (CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool1)
  • 11851-124I6 (CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool2)
  • 11852-124I7 (CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool1)
  • 11853-124I8 (CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool2)

Mouse (Mus musculus)

  • 11515-119H3 (Renal Proximal Tubular Epithelial Cell, donor1)
  • 11595-120H2 (Renal Proximal Tubular Epithelial Cell, donor2)
  • 11676-122H2 (Renal Proximal Tubular Epithelial Cell, donor3)
  • 11848-124I3 (CD326+ enterocyte, pool1)
  • 11849-124I4 (CD326+ enterocyte, pool2)
  • 11850-124I5 (CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool1)
  • 11851-124I6 (CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool2)
  • 11852-124I7 (CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool1)
  • 11853-124I8 (CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool2)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000239 (brush border epithelial cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
8.98e-131FFCP PHASE1:Hg19::chr5:167718782..167718785,+#_ca1c06ea27800bb72a8a96f68737014bp10@WWC1
8.98e-131FFCP PHASE2:Hg19::chr5:167718782..167718785,+#_ca1c06ea27800bb72a8a96f68737014bp10@WWC1
1.01e-74FFCP PHASE2:Hg19::chr3:149260147..149260154,-#_e3808e8a99a75c1eb9dff6c87f3c848cp39@WWTR1
1.01e-74FFCP PHASE1:Hg19::chr3:149260147..149260154,-#_e3808e8a99a75c1eb9dff6c87f3c848cp39@WWTR1
1.24e-73FFCP PHASE1:Hg19::chr17:46679250..46679298,+#_9e5b69c9b9d2097857d67c4d73fb58ccp1@ENST00000491264
1.24e-73FFCP PHASE2:Hg19::chr17:46679250..46679298,+#_9e5b69c9b9d2097857d67c4d73fb58ccp1@ENST00000491264
2.39e-66FFCP PHASE2:Hg19::chr16:61687533..61687551,-#_19181c50da662c1e01a2e8036c60d92dp@chr16:61687533..61687551, -
2.39e-66FFCP PHASE2:Hg19::chr16:62055187..62055188,+#_19181c50da662c1e01a2e8036c60d92dp@chr16:62055187..62055188, +
2.39e-66FFCP PHASE2:Hg19::chr3:123667850..123667851,+#_19181c50da662c1e01a2e8036c60d92dp@chr3:123667850..123667851, +
2.39e-66FFCP PHASE1:Hg19::chr3:123667850..123667851,+#_19181c50da662c1e01a2e8036c60d92dp@chr3:123667850..123667851, +
2.39e-66FFCP PHASE1:Hg19::chr16:61687533..61687551,-#_19181c50da662c1e01a2e8036c60d92dp@chr16:61687533..61687551, -
2.39e-66FFCP PHASE2:Hg19::chr8:6614884..6614885,+#_19181c50da662c1e01a2e8036c60d92dp@chr8:6614884..6614885, +
2.39e-66FFCP PHASE1:Hg19::chr8:6614884..6614885,+#_19181c50da662c1e01a2e8036c60d92dp@chr8:6614884..6614885, +
2.39e-66FFCP PHASE1:Hg19::chr16:62055187..62055188,+#_19181c50da662c1e01a2e8036c60d92dp@chr16:62055187..62055188, +
3.74e-65FFCP PHASE2:Mm9::chr9:50547790..50547793,+#_32974cd30403c7e75ab1d9959d2c4212p@chr9:50547790..50547793, +
3.74e-65FFCP PHASE1:Mm9::chr9:50547790..50547793,+#_32974cd30403c7e75ab1d9959d2c4212p@chr9:50547790..50547793, +
6.21e-65FFCP PHASE2:Mm9::chr8:122335239..122335244,+#_5f66efdae9240b7a9dd6aab3fb34b551p@chr8:122335239..122335244, +
6.21e-65FFCP PHASE1:Mm9::chr8:122335239..122335244,+#_5f66efdae9240b7a9dd6aab3fb34b551p@chr8:122335239..122335244, +
1.22e-59FFCP PHASE1:Hg19::chr15:66420804..66420837,-#_7830bd5d187be990925d7a0994abed94p4@MEGF11
1.22e-59FFCP PHASE2:Hg19::chr15:66420804..66420837,-#_7830bd5d187be990925d7a0994abed94p4@MEGF11
2.15e-58FFCP PHASE2:Mm9::chr12:79850576..79850587,-#_536bf4c6196c2b487226278a45330f7ap@chr12:79850576..79850587, -
2.15e-58FFCP PHASE1:Mm9::chr12:79850576..79850587,-#_536bf4c6196c2b487226278a45330f7ap@chr12:79850576..79850587, -
2.15e-58FFCP PHASE2:Mm9::chr4:141179191..141179200,+#_536bf4c6196c2b487226278a45330f7ap@chr4:141179191..141179200, +
2.15e-58FFCP PHASE1:Mm9::chr4:141179191..141179200,+#_536bf4c6196c2b487226278a45330f7ap@chr4:141179191..141179200, +
3.91e-58FFCP PHASE2:Mm9::chr12:40668168..40668171,+#_c041230dc0ea753ed754cf62d7729784p@chr12:40668168..40668171, +
3.91e-58FFCP PHASE1:Mm9::chr12:40668168..40668171,+#_c041230dc0ea753ed754cf62d7729784p@chr12:40668168..40668171, +
3.91e-58FFCP PHASE1:Mm9::chr15:84503292..84503296,+#_c041230dc0ea753ed754cf62d7729784p@chr15:84503292..84503296, +
3.91e-58FFCP PHASE2:Mm9::chr15:84503292..84503296,+#_c041230dc0ea753ed754cf62d7729784p@chr15:84503292..84503296, +
3.75e-53FFCP PHASE1:Hg19::chr9:114828174..114828179,+#_1873d4f9e2f6d43112d4cba5d22b76fcp@chr9:114828174..114828179, +
3.75e-53FFCP PHASE2:Hg19::chr9:114828174..114828179,+#_1873d4f9e2f6d43112d4cba5d22b76fcp@chr9:114828174..114828179, +
1.25e-52FFCP PHASE2:Mm9::chr2:33323607..33323635,+#_882df67f46feeb320654654fbc55433ep@chr2:33323607..33323635, +
1.25e-52FFCP PHASE1:Mm9::chr2:33323607..33323635,+#_882df67f46feeb320654654fbc55433ep@chr2:33323607..33323635, +
2.53e-52FFCP PHASE1:Mm9::chr8:107365938..107365944,+#_ea8f49988284e1d58ef9288e1a644f22p@chr8:107365938..107365944, +
2.53e-52FFCP PHASE2:Mm9::chr8:107365938..107365944,+#_ea8f49988284e1d58ef9288e1a644f22p@chr8:107365938..107365944, +
3.23e-52FFCP PHASE1:Mm9::chr3:104598813..104598825,+#_1bf32908795dfedffbc36fd4b1d36a1cp@chr3:104598813..104598825, +
3.23e-52FFCP PHASE2:Mm9::chr3:104598813..104598825,+#_1bf32908795dfedffbc36fd4b1d36a1cp@chr3:104598813..104598825, +
4.11e-52FFCP PHASE1:Mm9::chr8:125098705..125098710,+#_220971e1268557c926a08d6de89c8df5p@chr8:125098705..125098710, +
4.11e-52FFCP PHASE2:Mm9::chr8:125098705..125098710,+#_220971e1268557c926a08d6de89c8df5p@chr8:125098705..125098710, +
5.18e-52FFCP PHASE2:Mm9::chr5:135465906..135465912,+#_2352a518f93d1439287f7d95c520d053p@chr5:135465906..135465912, +
5.18e-52FFCP PHASE1:Mm9::chr5:135465906..135465912,+#_2352a518f93d1439287f7d95c520d053p@chr5:135465906..135465912, +
2.22e-51FFCP PHASE2:Mm9::chr9:84127758..84127761,+#_8905485fafd225ac10329b6f3240bdc3p@chr9:84127758..84127761, +
2.22e-51FFCP PHASE1:Mm9::chr9:84127758..84127761,+#_8905485fafd225ac10329b6f3240bdc3p@chr9:84127758..84127761, +
8.37e-49FFCP PHASE1:Mm9::chr5:64219055..64219063,-#_c3baaa163dbfdd57ddd26cf46ea86eaep@chr5:64219055..64219063, -
8.37e-49FFCP PHASE2:Mm9::chr5:64219055..64219063,-#_c3baaa163dbfdd57ddd26cf46ea86eaep@chr5:64219055..64219063, -
2.57e-48FFCP PHASE2:Mm9::chr15:82182200..82182204,+#_7238df03641018dbf57a433b2ca0ebb9p@chr15:82182200..82182204, +
2.57e-48FFCP PHASE1:Mm9::chr15:82182200..82182204,+#_7238df03641018dbf57a433b2ca0ebb9p@chr15:82182200..82182204, +
4.49e-48FFCP PHASE1:Mm9::chr9:46051244..46051255,+#_08b8b94530b1556693f8411d76dbac6dp@chr9:46051244..46051255, +
4.49e-48FFCP PHASE2:Mm9::chr9:46051244..46051255,+#_08b8b94530b1556693f8411d76dbac6dp@chr9:46051244..46051255, +
5.4e-48FFCP PHASE1:Mm9::chr1:156931282..156931291,-#_702f9c3e3e0e3a2ffde7dc717920e020p@chr1:156931282..156931291, -
5.4e-48FFCP PHASE2:Mm9::chr1:156931282..156931291,-#_702f9c3e3e0e3a2ffde7dc717920e020p@chr1:156931282..156931291, -
6.51e-48FFCP PHASE1:Mm9::chr17:57201412..57201418,-#_09b76f7f3bdb6637943b54a17835781bp@chr17:57201412..57201418, -
6.51e-48FFCP PHASE2:Mm9::chr17:57201412..57201418,-#_09b76f7f3bdb6637943b54a17835781bp@chr17:57201412..57201418, -
1.37e-47FFCP PHASE1:Mm9::chr17:46693370..46693378,+#_2331b45c74500296a1d81d679a25af00p@chr17:46693370..46693378, +
1.37e-47FFCP PHASE2:Mm9::chr17:46693370..46693378,+#_2331b45c74500296a1d81d679a25af00p@chr17:46693370..46693378, +
6.34e-47FFCP PHASE1:Mm9::chr2:24234641..24234644,+#_0af16157491b795d03f689bf9d655971p@chr2:24234641..24234644, +
6.34e-47FFCP PHASE2:Mm9::chr2:24234641..24234644,+#_0af16157491b795d03f689bf9d655971p@chr2:24234641..24234644, +
6.34e-47FFCP PHASE2:Mm9::chr14:26286217..26286232,+#_0af16157491b795d03f689bf9d655971p@chr14:26286217..26286232, +
6.34e-47FFCP PHASE2:Mm9::chr6:137486449..137486455,+#_0af16157491b795d03f689bf9d655971p@chr6:137486449..137486455, +
6.34e-47FFCP PHASE1:Mm9::chr4:142835790..142835793,-#_0af16157491b795d03f689bf9d655971p@chr4:142835790..142835793, -
6.34e-47FFCP PHASE2:Mm9::chr1:13659869..13659873,-#_0af16157491b795d03f689bf9d655971p@chr1:13659869..13659873, -
6.34e-47FFCP PHASE2:Mm9::chr4:142835790..142835793,-#_0af16157491b795d03f689bf9d655971p@chr4:142835790..142835793, -
6.34e-47FFCP PHASE1:Mm9::chr2:76337146..76337155,+#_0af16157491b795d03f689bf9d655971p5@Osbpl6
6.34e-47FFCP PHASE1:Mm9::chr1:13659869..13659873,-#_0af16157491b795d03f689bf9d655971p@chr1:13659869..13659873, -
6.34e-47FFCP PHASE1:Mm9::chr14:26286217..26286232,+#_0af16157491b795d03f689bf9d655971p@chr14:26286217..26286232, +
6.34e-47FFCP PHASE2:Mm9::chr2:76337146..76337155,+#_0af16157491b795d03f689bf9d655971p5@Osbpl6
6.34e-47FFCP PHASE1:Mm9::chr6:137486449..137486455,+#_0af16157491b795d03f689bf9d655971p@chr6:137486449..137486455, +
1.09e-46FFCP PHASE1:Mm9::chr5:136252496..136252506,+#_c360fdb43f24c266ee38ecd61e869433p@chr5:136252496..136252506, +
1.09e-46FFCP PHASE2:Mm9::chr5:136252496..136252506,+#_c360fdb43f24c266ee38ecd61e869433p@chr5:136252496..136252506, +
1.65e-46FFCP PHASE1:Hg19::chr7:140227349..140227360,-#_4409221cb37b8e87a4e48f0f4b6177cep@chr7:140227349..140227360, -
1.65e-46FFCP PHASE2:Hg19::chr7:140227349..140227360,-#_4409221cb37b8e87a4e48f0f4b6177cep@chr7:140227349..140227360, -
6.32e-46FFCP PHASE2:Mm9::chr19:11893526..11893532,+#_2fdb86b8751b86e63464835c87a6716bp@chr19:11893526..11893532, +
6.32e-46FFCP PHASE2:Mm9::chr2:31008686..31008692,-#_2fdb86b8751b86e63464835c87a6716bp@chr2:31008686..31008692, -
6.32e-46FFCP PHASE1:Mm9::chr2:31008686..31008692,-#_2fdb86b8751b86e63464835c87a6716bp@chr2:31008686..31008692, -
6.32e-46FFCP PHASE1:Mm9::chr19:11893526..11893532,+#_2fdb86b8751b86e63464835c87a6716bp@chr19:11893526..11893532, +
7.81e-46FFCP PHASE1:Mm9::chr10:79561288..79561291,-#_c23235d53ede203fb583b1588a848766p@chr10:79561288..79561291, -
7.81e-46FFCP PHASE2:Mm9::chr10:79561288..79561291,-#_c23235d53ede203fb583b1588a848766p@chr10:79561288..79561291, -
1.47e-45FFCP PHASE1:Mm9::chr3:35620179..35620188,+#_8cc1f50eb94e91fc5c8e488a57a5ab95p@chr3:35620179..35620188, +
1.47e-45FFCP PHASE2:Mm9::chr3:35620179..35620188,+#_8cc1f50eb94e91fc5c8e488a57a5ab95p@chr3:35620179..35620188, +
7.81e-45FFCP PHASE1:Hg19::chr6:30890373..30890381,+#_e0b7d2e36956e174f6b2fe8c01b2f3bcp9@VARS2
7.81e-45FFCP PHASE2:Hg19::chr6:30890373..30890381,+#_e0b7d2e36956e174f6b2fe8c01b2f3bcp9@VARS2
1.2e-44FFCP PHASE2:Mm9::chr18:66636209..66636215,-#_3f41308b5a0997514dda8a7a44109a07p@chr18:66636209..66636215, -
1.2e-44FFCP PHASE2:Mm9::chr15:103135874..103135880,+#_3f41308b5a0997514dda8a7a44109a07p@chr15:103135874..103135880, +
1.2e-44FFCP PHASE1:Mm9::chr15:103135874..103135880,+#_3f41308b5a0997514dda8a7a44109a07p@chr15:103135874..103135880, +
1.2e-44FFCP PHASE1:Mm9::chr18:66636209..66636215,-#_3f41308b5a0997514dda8a7a44109a07p@chr18:66636209..66636215, -
1.42e-44FFCP PHASE1:Mm9::chr16:78268076..78268083,-#_3d0fa1bfb34b5c286ee09427763e03e8p@chr16:78268076..78268083, -
1.42e-44FFCP PHASE1:Mm9::chr10:80565428..80565433,+#_3d0fa1bfb34b5c286ee09427763e03e8p@chr10:80565428..80565433, +
1.42e-44FFCP PHASE2:Mm9::chr16:78268076..78268083,-#_3d0fa1bfb34b5c286ee09427763e03e8p@chr16:78268076..78268083, -
1.42e-44FFCP PHASE2:Mm9::chr10:80565428..80565433,+#_3d0fa1bfb34b5c286ee09427763e03e8p@chr10:80565428..80565433, +
5.38e-44FFCP PHASE2:Mm9::chr1:132748706..132748715,+#_4df3da5fbc8b6c04370b60e7df8ac6ccp@chr1:132748706..132748715, +
5.38e-44FFCP PHASE1:Mm9::chr1:132748706..132748715,+#_4df3da5fbc8b6c04370b60e7df8ac6ccp@chr1:132748706..132748715, +
5.58e-44FFCP PHASE1:Mm9::chr2:143738263..143738267,+#_13133b67a856c95cb4502bce7457e9a3p@chr2:143738263..143738267, +
5.58e-44FFCP PHASE2:Mm9::chr2:143738263..143738267,+#_13133b67a856c95cb4502bce7457e9a3p@chr2:143738263..143738267, +
7.05e-43FFCP PHASE1:Mm9::chr3:122215917..122215967,-#_c8fee78098d841c5cb58b0234fab8aefp@chr3:122215917..122215967, -
7.05e-43FFCP PHASE2:Mm9::chr3:122215917..122215967,-#_c8fee78098d841c5cb58b0234fab8aefp@chr3:122215917..122215967, -
2.1e-41FFCP PHASE1:Mm9::chr12:111682896..111682907,+#_5ce7c5036a15734c4df65ec83854673ep@chr12:111682896..111682907, +
2.1e-41FFCP PHASE2:Mm9::chr12:111682896..111682907,+#_5ce7c5036a15734c4df65ec83854673ep@chr12:111682896..111682907, +
2.46e-41FFCP PHASE1:Mm9::chr16:32380022..32380027,+#_f4f6472deb801695f2add4e794710ee9p@chr16:32380022..32380027, +
2.46e-41FFCP PHASE2:Mm9::chr16:32380022..32380027,+#_f4f6472deb801695f2add4e794710ee9p@chr16:32380022..32380027, +
2.88e-41FFCP PHASE1:Mm9::chr7:96869911..96869915,+#_926ff8564e2e28069620fc4e254fecc6p@chr7:96869911..96869915, +
2.88e-41FFCP PHASE2:Mm9::chr7:96869911..96869915,+#_926ff8564e2e28069620fc4e254fecc6p@chr7:96869911..96869915, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=CL:0000239&oldid=1836561"