UBERON:0003072: Difference between revisions
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|name=optic cup | |name=optic cup | ||
|namespace= | |namespace= | ||
|def="Multi-tissue structure that is comprised of neural and non-neural epithelial layers which will form the retina and retinal pigmented epithelium of the mature eye[ZFA]. double walled structured formed by expansion and invagination of the distal end of the optic vesicle that develops into the pigmented and sensory layers of the retina while the mouth of the optic cup eventually forms the pupil of the eye[MP]." [MP:0004269, ZFA:0001202] | |def="Multi-tissue structure that is comprised of neural and non-neural epithelial layers which will form the retina and retinal pigmented epithelium of the mature eye[ZFA]. double walled structured formed by expansion and invagination of the distal end of the optic vesicle that develops into the pigmented and sensory layers of the retina while the mouth of the optic cup eventually forms the pupil of the eye[MP]." [MP:0004269, Optic_cup_(embryology), ZFA:0001202] | ||
|xref= | |xref=EHDAA2:0001303;;EHDAA:2912;;EMAPA:16674;;ncithesaurus:Optic_Cup;;SCTID:308789007;;TAO:0001202;;VHOG:0000167;;ZFA:0001202 | ||
|is_a=UBERON:0000481;;UBERON:0004121 | |is_a=UBERON:0000481;;UBERON:0004121 | ||
|synonym="eye cup" RELATED [] | |synonym="eye cup" RELATED [] | ||
|comment= | |comment= | ||
|alt_id=UBERON:XAO_0000228-ZFA_0001202 | |alt_id=UBERON:XAO_0000228-ZFA_0001202 | ||
|disjoint_from= | |disjoint_from= | ||
| Line 14: | Line 14: | ||
|obo_creation_date= | |obo_creation_date= | ||
|subset=vertebrate_core | |subset=vertebrate_core | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
Revision as of 17:03, 26 June 2012
| Name: | optic cup | ||
|---|---|---|---|
| Definition: | "Multi-tissue structure that is comprised of neural and non-neural epithelial layers which will form the retina and retinal pigmented epithelium of the mature eye[ZFA]. double walled structured formed by expansion and invagination of the distal end of the optic vesicle that develops into the pigmented and sensory layers of the retina while the mouth of the optic cup eventually forms the pupil of the eye[MP]." [MP:0004269, Optic_cup_(embryology), ZFA:0001202] | ||
| Xrefs: |
| ||
| Synonyms: | "eye cup" RELATED [] | ||
| Alt_id: | UBERON:XAO_0000228-ZFA_0001202 | ||
| Subset: | vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000481(multi-tissue structure),UBERON:0004121(ectoderm-derived structure) |
|---|
Children
| develops from: | UBERON:0000019 (camera-type eye),UBERON:0000966 (retina) |
|---|---|
| part of: | UBERON:0005424 (presumptive retinal pigmented epithelium),UBERON:0005425 (presumptive neural retina) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003072 (optic cup), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.31e-86 | FFCP PHASE1:Mm9::chr9:89697580..89697585,-#_c3cd93807b79984356f159533c771a51 | p1@Mir184 |
| 1.31e-86 | FFCP PHASE2:Mm9::chr11:77532391..77532408,-#_c3cd93807b79984356f159533c771a51 | p@chr11:77532391..77532408, - |
| 1.31e-86 | FFCP PHASE1:Mm9::chr11:77532283..77532316,-#_c3cd93807b79984356f159533c771a51 | p@chr11:77532283..77532316, - |
| 1.31e-86 | FFCP PHASE1:Mm9::chr17:31817987..31818013,+#_c3cd93807b79984356f159533c771a51 | p@chr17:31817987..31818013, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr10:67364011..67364018,-#_c3cd93807b79984356f159533c771a51 | p5@Zfp365 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr14:118451218..118451221,-#_c3cd93807b79984356f159533c771a51 | p4@Dct |
| 1.31e-86 | FFCP PHASE1:Mm9::chr10:127668442..127668453,+#_c3cd93807b79984356f159533c771a51 | p@chr10:127668442..127668453, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr11:77532283..77532316,-#_c3cd93807b79984356f159533c771a51 | p@chr11:77532283..77532316, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr17:31815126..31815139,-#_c3cd93807b79984356f159533c771a51 | p@chr17:31815126..31815139, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr10:127668442..127668453,+#_c3cd93807b79984356f159533c771a51 | p@chr10:127668442..127668453, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr17:31818106..31818119,+#_c3cd93807b79984356f159533c771a51 | p@chr17:31818106..31818119, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr16:21743134..21743139,-#_c3cd93807b79984356f159533c771a51 | p@chr16:21743134..21743139, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr3:129525389..129525400,-#_c3cd93807b79984356f159533c771a51 | p@chr3:129525389..129525400, - |
| 1.31e-86 | FFCP PHASE1:Mm9::chr3:129525389..129525400,-#_c3cd93807b79984356f159533c771a51 | p@chr3:129525389..129525400, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr4:133799669..133799683,+#_c3cd93807b79984356f159533c771a51 | p1@E130218I03Rik |
| 1.31e-86 | FFCP PHASE1:Mm9::chr17:31818263..31818276,+#_c3cd93807b79984356f159533c771a51 | p@chr17:31818263..31818276, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr11:3622163..3622187,-#_c3cd93807b79984356f159533c771a51 | p8@Osbp2 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr10:67364011..67364018,-#_c3cd93807b79984356f159533c771a51 | p5@Zfp365 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr2:90827760..90827769,+#_c3cd93807b79984356f159533c771a51 | p6@Celf1 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr17:31818106..31818119,+#_c3cd93807b79984356f159533c771a51 | p@chr17:31818106..31818119, + |
| 1.31e-86 | FFCP PHASE1:Mm9::chr16:21743134..21743139,-#_c3cd93807b79984356f159533c771a51 | p@chr16:21743134..21743139, - |
| 1.31e-86 | FFCP PHASE1:Mm9::chr11:3622163..3622187,-#_c3cd93807b79984356f159533c771a51 | p8@Osbp2 |
| 1.31e-86 | FFCP PHASE2:Mm9::chr17:31817987..31818013,+#_c3cd93807b79984356f159533c771a51 | p@chr17:31817987..31818013, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr9:89697580..89697585,-#_c3cd93807b79984356f159533c771a51 | p1@Mir184 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr11:77532391..77532408,-#_c3cd93807b79984356f159533c771a51 | p@chr11:77532391..77532408, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr14:118451218..118451221,-#_c3cd93807b79984356f159533c771a51 | p4@Dct |
| 1.31e-86 | FFCP PHASE1:Mm9::chr4:133799669..133799683,+#_c3cd93807b79984356f159533c771a51 | p1@E130218I03Rik |
| 1.31e-86 | FFCP PHASE2:Mm9::chr11:3622192..3622225,-#_c3cd93807b79984356f159533c771a51 | p3@Osbp2 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr11:3622192..3622225,-#_c3cd93807b79984356f159533c771a51 | p3@Osbp2 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr17:31815126..31815139,-#_c3cd93807b79984356f159533c771a51 | p@chr17:31815126..31815139, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr2:90827760..90827769,+#_c3cd93807b79984356f159533c771a51 | p6@Celf1 |
| 1.31e-86 | FFCP PHASE2:Mm9::chr17:31818263..31818276,+#_c3cd93807b79984356f159533c771a51 | p@chr17:31818263..31818276, + |
| 2.3e-78 | FFCP PHASE1:Mm9::chr7:64675015..64675028,+#_325fdbe4da15376563fd67c152125a12 | p@chr7:64675015..64675028, + |
| 2.3e-78 | FFCP PHASE2:Mm9::chr7:64675015..64675028,+#_325fdbe4da15376563fd67c152125a12 | p@chr7:64675015..64675028, + |
| 2.3e-78 | FFCP PHASE1:Mm9::chr10:127668637..127668650,+#_325fdbe4da15376563fd67c152125a12 | p3@LOC100504989, p3@Timeless |
| 2.3e-78 | FFCP PHASE2:Mm9::chr10:127668637..127668650,+#_325fdbe4da15376563fd67c152125a12 | p3@LOC100504989, p3@Timeless |
| 2.82e-78 | FFCP PHASE1:Mm9::chr2:105509100..105509107,+#_0a2f8d1c541b0652a534636663520f9c | p6@Pax6 |
| 2.82e-78 | FFCP PHASE2:Mm9::chr2:105509100..105509107,+#_0a2f8d1c541b0652a534636663520f9c | p6@Pax6 |
| 2.82e-78 | FFCP PHASE2:Mm9::chr6:97891135..97891147,+#_0a2f8d1c541b0652a534636663520f9c | p@chr6:97891135..97891147, + |
| 2.82e-78 | FFCP PHASE1:Mm9::chr6:97891135..97891147,+#_0a2f8d1c541b0652a534636663520f9c | p@chr6:97891135..97891147, + |
| 3.46e-78 | FFCP PHASE2:Mm9::chr14:49498256..49498278,+#_0592175738a5acdea87c0a484e51efe1 | p1@4933429O19Rik |
| 3.46e-78 | FFCP PHASE1:Mm9::chr14:49498256..49498278,+#_0592175738a5acdea87c0a484e51efe1 | p1@4933429O19Rik |
| 4.97e-77 | FFCP PHASE1:Mm9::chr8:77582172..77582183,+#_022d8341b370c6ca5b1301b32de1d706 | p@chr8:77582172..77582183, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr17:31816584..31816600,+#_022d8341b370c6ca5b1301b32de1d706 | p@chr17:31816584..31816600, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:113504891..113504916,-#_022d8341b370c6ca5b1301b32de1d706 | p@chr5:113504891..113504916, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr3:129525452..129525463,-#_022d8341b370c6ca5b1301b32de1d706 | p3@Rrh |
| 4.97e-77 | FFCP PHASE1:Mm9::chr3:129525452..129525463,-#_022d8341b370c6ca5b1301b32de1d706 | p3@Rrh |
| 4.97e-77 | FFCP PHASE2:Mm9::chr11:77532270..77532280,-#_022d8341b370c6ca5b1301b32de1d706 | p@chr11:77532270..77532280, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr7:29477874..29477889,+#_022d8341b370c6ca5b1301b32de1d706 | p6@Fbxo27 |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:113507470..113507483,-#_022d8341b370c6ca5b1301b32de1d706 | p@chr5:113507470..113507483, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr6:115162924..115162933,+#_022d8341b370c6ca5b1301b32de1d706 | p@chr6:115162924..115162933, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr6:85969237..85969247,+#_022d8341b370c6ca5b1301b32de1d706 | p@chr6:85969237..85969247, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr10:127668799..127668810,+#_022d8341b370c6ca5b1301b32de1d706 | p5@LOC100504989, p5@Timeless |
| 4.97e-77 | FFCP PHASE2:Mm9::chr15:36655026..36655032,+#_022d8341b370c6ca5b1301b32de1d706 | p@chr15:36655026..36655032, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr10:127668799..127668810,+#_022d8341b370c6ca5b1301b32de1d706 | p5@LOC100504989, p5@Timeless |
| 4.97e-77 | FFCP PHASE1:Mm9::chr1:38092602..38092616,+#_022d8341b370c6ca5b1301b32de1d706 | p@chr1:38092602..38092616, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:112681470..112681483,-#_022d8341b370c6ca5b1301b32de1d706 | p@chr5:112681470..112681483, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:112691047..112691066,+#_022d8341b370c6ca5b1301b32de1d706 | p@chr5:112691047..112691066, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr8:77582194..77582219,+#_022d8341b370c6ca5b1301b32de1d706 | p@chr8:77582194..77582219, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112686483..112686494,+#_022d8341b370c6ca5b1301b32de1d706 | p@chr5:112686483..112686494, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:112690729..112690741,+#_022d8341b370c6ca5b1301b32de1d706 | p@chr5:112690729..112690741, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112696408..112696421,-#_022d8341b370c6ca5b1301b32de1d706 | p@chr5:112696408..112696421, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr8:77582194..77582219,+#_022d8341b370c6ca5b1301b32de1d706 | p@chr8:77582194..77582219, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr17:31818629..31818644,+#_022d8341b370c6ca5b1301b32de1d706 | p@chr17:31818629..31818644, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr14:49501519..49501530,-#_022d8341b370c6ca5b1301b32de1d706 | p@chr14:49501519..49501530, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr14:35413322..35413333,-#_022d8341b370c6ca5b1301b32de1d706 | p1@Opn4 |
| 4.97e-77 | FFCP PHASE1:Mm9::chr16:56204438..56204451,+#_022d8341b370c6ca5b1301b32de1d706 | p1@Impg2 |
| 4.97e-77 | FFCP PHASE2:Mm9::chr16:56204438..56204451,+#_022d8341b370c6ca5b1301b32de1d706 | p1@Impg2 |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:112696408..112696421,-#_022d8341b370c6ca5b1301b32de1d706 | p@chr5:112696408..112696421, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:113504891..113504916,-#_022d8341b370c6ca5b1301b32de1d706 | p@chr5:113504891..113504916, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112675556..112675574,-#_022d8341b370c6ca5b1301b32de1d706 | p@chr5:112675556..112675574, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr3:34488839..34488876,+#_022d8341b370c6ca5b1301b32de1d706 | p1@ENSMUST00000173365 |
| 4.97e-77 | FFCP PHASE1:Mm9::chr6:85969237..85969247,+#_022d8341b370c6ca5b1301b32de1d706 | p@chr6:85969237..85969247, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr1:152166537..152166579,+#_022d8341b370c6ca5b1301b32de1d706 | p1@Pdc |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:112690636..112690656,+#_022d8341b370c6ca5b1301b32de1d706 | p@chr5:112690636..112690656, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr7:28282354..28282365,+#_022d8341b370c6ca5b1301b32de1d706 | p@chr7:28282354..28282365, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112691047..112691066,+#_022d8341b370c6ca5b1301b32de1d706 | p@chr5:112691047..112691066, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112690729..112690741,+#_022d8341b370c6ca5b1301b32de1d706 | p@chr5:112690729..112690741, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:113506190..113506202,-#_022d8341b370c6ca5b1301b32de1d706 | p@chr5:113506190..113506202, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr9:107964319..107964338,-#_022d8341b370c6ca5b1301b32de1d706 | p11@Rnf123 |
| 4.97e-77 | FFCP PHASE2:Mm9::chr17:31817947..31817965,+#_022d8341b370c6ca5b1301b32de1d706 | p@chr17:31817947..31817965, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr10:127668480..127668491,+#_022d8341b370c6ca5b1301b32de1d706 | p@chr10:127668480..127668491, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:113506006..113506025,-#_022d8341b370c6ca5b1301b32de1d706 | p@chr5:113506006..113506025, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr3:34488839..34488876,+#_022d8341b370c6ca5b1301b32de1d706 | p1@ENSMUST00000173365 |
| 4.97e-77 | FFCP PHASE1:Mm9::chr1:65147201..65147212,-#_022d8341b370c6ca5b1301b32de1d706 | p@chr1:65147201..65147212, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:112690744..112690755,+#_022d8341b370c6ca5b1301b32de1d706 | p@chr5:112690744..112690755, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr2:93906955..93906973,-#_022d8341b370c6ca5b1301b32de1d706 | p2@Hsd17b12 |
| 4.97e-77 | FFCP PHASE2:Mm9::chr11:95705150..95705170,+#_022d8341b370c6ca5b1301b32de1d706 | p3@Gngt2 |
| 4.97e-77 | FFCP PHASE2:Mm9::chr10:127668480..127668491,+#_022d8341b370c6ca5b1301b32de1d706 | p@chr10:127668480..127668491, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr1:65147201..65147212,-#_022d8341b370c6ca5b1301b32de1d706 | p@chr1:65147201..65147212, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr17:31816514..31816526,+#_022d8341b370c6ca5b1301b32de1d706 | p@chr17:31816514..31816526, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr1:38092538..38092550,+#_022d8341b370c6ca5b1301b32de1d706 | p@chr1:38092538..38092550, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr7:29477874..29477889,+#_022d8341b370c6ca5b1301b32de1d706 | p6@Fbxo27 |
| 4.97e-77 | FFCP PHASE1:Mm9::chr4:19208009..19208054,+#_022d8341b370c6ca5b1301b32de1d706 | p1@Cngb3 |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112690636..112690656,+#_022d8341b370c6ca5b1301b32de1d706 | p@chr5:112690636..112690656, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr17:31818215..31818239,-#_022d8341b370c6ca5b1301b32de1d706 | p@chr17:31818215..31818239, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr4:19208009..19208054,+#_022d8341b370c6ca5b1301b32de1d706 | p1@Cngb3 |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:112675556..112675574,-#_022d8341b370c6ca5b1301b32de1d706 | p@chr5:112675556..112675574, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr9:107964319..107964338,-#_022d8341b370c6ca5b1301b32de1d706 | p11@Rnf123 |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112681470..112681483,-#_022d8341b370c6ca5b1301b32de1d706 | p@chr5:112681470..112681483, - |
