DOID:1612: Difference between revisions
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|name=breast cancer | |name=breast cancer | ||
|namespace=disease_ontology | |namespace=disease_ontology | ||
|def="A thoracic cancer that originates in the mammary gland." [url:http | |def="A thoracic cancer that originates in the mammary gland." [url:http://en.wikipedia.org/wiki/Mammary_tumor] | ||
|xref=MSH:D001943;;NCI:C9335;;OMIM:114480;;SNOMEDCT_2010_1_31:126926005;;SNOMEDCT_2010_1_31:154521006;;SNOMEDCT_2010_1_31:190121004;;SNOMEDCT_2010_1_31:254837009;;SNOMEDCT_2010_1_31:269595005;;UMLS_CUI:C0006142;;UMLS_CUI:C0153555;;UMLS_CUI:C1458155 | |xref=MSH:D001943;;NCI:C9335;;OMIM:114480;;SNOMEDCT_2010_1_31:126926005;;SNOMEDCT_2010_1_31:154521006;;SNOMEDCT_2010_1_31:190121004;;SNOMEDCT_2010_1_31:254837009;;SNOMEDCT_2010_1_31:269595005;;UMLS_CUI:C0006142;;UMLS_CUI:C0153555;;UMLS_CUI:C1458155 | ||
|is_a=DOID:5093 | |is_a=DOID:5093 | ||
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|obo_creation_date= | |obo_creation_date= | ||
|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
Revision as of 16:31, 26 June 2012
| Name: | breast cancer | ||
|---|---|---|---|
| Namespace: | disease_ontology | ||
| Definition: | "A thoracic cancer that originates in the mammary gland." [url:http://en.wikipedia.org/wiki/Mammary_tumor] | ||
| Xrefs: |
| ||
| Synonyms: |
"breast cancer" EXACT [] "breast tumor" EXACT [NCI2004_11_17:C2910] "Ca breast - NOS" EXACT [SNOMEDCT_2005_07_31:154521006] "malignant neoplasm of breast" EXACT [] "malignant tumor of the breast" EXACT [NCI2004_11_17:C9335] "mammary cancer" EXACT [] "mammary neoplasm" RELATED [] "mammary tumor" EXACT [CSP2005:2016-0671] "primary breast cancer" EXACT [] | ||
| Comments: | OMIM mapping confirmed by DO. [SN]. | ||
| Alt_id: |
DOID:1648 DOID:4241 |
Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | DOID:5093(thoracic cancer) |
|---|
Children
NA
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples
Human (Homo sapiens)
- 10419-106C5 (breast carcinoma cell line:MDA-MB-453)
- 10482-107A5 (breast carcinoma cell line:MCF7)
- 10779-110G5
- 13031-139E7 (MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep1)
- 13032-139E8 (MCF7 breast cancer cell line response to EGF1)
- 13033-139E9 (MCF7 breast cancer cell line response to EGF1)
- 13034-139F1 (MCF7 breast cancer cell line response to EGF1)
- 13035-139F2 (MCF7 breast cancer cell line response to EGF1)
- 13036-139F3 (MCF7 breast cancer cell line response to EGF1)
- 13037-139F4 (MCF7 breast cancer cell line response to EGF1)
... further results Mouse (Mus musculus)
- 10419-106C5 (breast carcinoma cell line:MDA-MB-453)
- 10482-107A5 (breast carcinoma cell line:MCF7)
- 10779-110G5
- 13031-139E7 (MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep1)
- 13032-139E8 (MCF7 breast cancer cell line response to EGF1)
- 13033-139E9 (MCF7 breast cancer cell line response to EGF1)
- 13034-139F1 (MCF7 breast cancer cell line response to EGF1)
- 13035-139F2 (MCF7 breast cancer cell line response to EGF1)
- 13036-139F3 (MCF7 breast cancer cell line response to EGF1)
- 13037-139F4 (MCF7 breast cancer cell line response to EGF1)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:1612 (breast cancer), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.57e-195 | FFCP PHASE1:Hg19::chr17:74574500..74574512,-#_cd40e37b26d776d5316b4b5611705f34 | p@chr17:74574500..74574512, - |
| 2.57e-195 | FFCP PHASE2:Hg19::chr17:74574500..74574512,-#_cd40e37b26d776d5316b4b5611705f34 | p@chr17:74574500..74574512, - |
| 6.94e-147 | FFCP PHASE1:Hg19::chr10:19498507..19498511,+#_9c302d1f970ff812f582d0066b7c66f1 | p@chr10:19498507..19498511, + |
| 6.94e-147 | FFCP PHASE2:Hg19::chr10:19498541..19498551,+#_9c302d1f970ff812f582d0066b7c66f1 | p@chr10:19498541..19498551, + |
| 6.94e-147 | FFCP PHASE1:Hg19::chr9:83986187..83986191,-#_9c302d1f970ff812f582d0066b7c66f1 | p@chr9:83986187..83986191, - |
| 6.94e-147 | FFCP PHASE1:Hg19::chr10:8910201..8910211,+#_9c302d1f970ff812f582d0066b7c66f1 | p@chr10:8910201..8910211, + |
| 6.94e-147 | FFCP PHASE2:Hg19::chr10:9012087..9012100,+#_9c302d1f970ff812f582d0066b7c66f1 | p1@ENST00000456526 |
| 6.94e-147 | FFCP PHASE2:Hg19::chr21:41755024..41755027,+#_9c302d1f970ff812f582d0066b7c66f1 | p2@DSCAM-AS1 |
| 6.94e-147 | FFCP PHASE1:Hg19::chr11:85539944..85539950,+#_9c302d1f970ff812f582d0066b7c66f1 | p@chr11:85539944..85539950, + |
| 6.94e-147 | FFCP PHASE1:Hg19::chr21:41756567..41756583,-#_9c302d1f970ff812f582d0066b7c66f1 | p@chr21:41756567..41756583, - |
| 6.94e-147 | FFCP PHASE2:Hg19::chr11:85539944..85539950,+#_9c302d1f970ff812f582d0066b7c66f1 | p@chr11:85539944..85539950, + |
| 6.94e-147 | FFCP PHASE1:Hg19::chr10:19498541..19498551,+#_9c302d1f970ff812f582d0066b7c66f1 | p@chr10:19498541..19498551, + |
| 6.94e-147 | FFCP PHASE2:Hg19::chr10:19498568..19498573,+#_9c302d1f970ff812f582d0066b7c66f1 | p@chr10:19498568..19498573, + |
| 6.94e-147 | FFCP PHASE1:Hg19::chr10:9012087..9012100,+#_9c302d1f970ff812f582d0066b7c66f1 | p1@ENST00000456526 |
| 6.94e-147 | FFCP PHASE1:Hg19::chr12:3324464..3324485,+#_9c302d1f970ff812f582d0066b7c66f1 | p4@TSPAN9 |
| 6.94e-147 | FFCP PHASE2:Hg19::chr21:41755185..41755210,+#_9c302d1f970ff812f582d0066b7c66f1 | p1@DSCAM-AS1 |
| 6.94e-147 | FFCP PHASE2:Hg19::chr10:19498407..19498415,+#_9c302d1f970ff812f582d0066b7c66f1 | p@chr10:19498407..19498415, + |
| 6.94e-147 | FFCP PHASE2:Hg19::chr12:3324464..3324485,+#_9c302d1f970ff812f582d0066b7c66f1 | p4@TSPAN9 |
| 6.94e-147 | FFCP PHASE2:Hg19::chr9:83986187..83986191,-#_9c302d1f970ff812f582d0066b7c66f1 | p@chr9:83986187..83986191, - |
| 6.94e-147 | FFCP PHASE1:Hg19::chr10:19498568..19498573,+#_9c302d1f970ff812f582d0066b7c66f1 | p@chr10:19498568..19498573, + |
| 6.94e-147 | FFCP PHASE1:Hg19::chr21:41711178..41711186,-#_9c302d1f970ff812f582d0066b7c66f1 | p@chr21:41711178..41711186, - |
| 6.94e-147 | FFCP PHASE2:Hg19::chr10:9012128..9012139,+#_9c302d1f970ff812f582d0066b7c66f1 | p2@ENST00000456526 |
| 6.94e-147 | FFCP PHASE1:Hg19::chr17:38843592..38843605,+#_9c302d1f970ff812f582d0066b7c66f1 | p@chr17:38843592..38843605, + |
| 6.94e-147 | FFCP PHASE1:Hg19::chr10:19498407..19498415,+#_9c302d1f970ff812f582d0066b7c66f1 | p@chr10:19498407..19498415, + |
| 6.94e-147 | FFCP PHASE2:Hg19::chr21:41756567..41756583,-#_9c302d1f970ff812f582d0066b7c66f1 | p@chr21:41756567..41756583, - |
| 6.94e-147 | FFCP PHASE2:Hg19::chr10:8904309..8904317,+#_9c302d1f970ff812f582d0066b7c66f1 | p@chr10:8904309..8904317, + |
| 6.94e-147 | FFCP PHASE1:Hg19::chr21:41755024..41755027,+#_9c302d1f970ff812f582d0066b7c66f1 | p2@DSCAM-AS1 |
| 6.94e-147 | FFCP PHASE1:Hg19::chr10:9012128..9012139,+#_9c302d1f970ff812f582d0066b7c66f1 | p2@ENST00000456526 |
| 6.94e-147 | FFCP PHASE2:Hg19::chr17:38843592..38843605,+#_9c302d1f970ff812f582d0066b7c66f1 | p@chr17:38843592..38843605, + |
| 6.94e-147 | FFCP PHASE2:Hg19::chr10:19498507..19498511,+#_9c302d1f970ff812f582d0066b7c66f1 | p@chr10:19498507..19498511, + |
| 6.94e-147 | FFCP PHASE1:Hg19::chr10:8904309..8904317,+#_9c302d1f970ff812f582d0066b7c66f1 | p@chr10:8904309..8904317, + |
| 6.94e-147 | FFCP PHASE2:Hg19::chr10:8910201..8910211,+#_9c302d1f970ff812f582d0066b7c66f1 | p@chr10:8910201..8910211, + |
| 6.94e-147 | FFCP PHASE2:Hg19::chr21:41711178..41711186,-#_9c302d1f970ff812f582d0066b7c66f1 | p@chr21:41711178..41711186, - |
| 6.94e-147 | FFCP PHASE1:Hg19::chr21:41755185..41755210,+#_9c302d1f970ff812f582d0066b7c66f1 | p1@DSCAM-AS1 |
| 2.79e-131 | FFCP PHASE2:Hg19::chr3:129226514..129226531,+#_8f74a50e0b15aa746be0b43e8b558ec3 | p@chr3:129226514..129226531, + |
| 2.79e-131 | FFCP PHASE1:Hg19::chr3:129226514..129226531,+#_8f74a50e0b15aa746be0b43e8b558ec3 | p@chr3:129226514..129226531, + |
| 8.91e-111 | FFCP PHASE2:Hg19::chr13:23733194..23733206,+#_081e426245ad66293813d6fcf8b456b6 | p@chr13:23733194..23733206, + |
| 8.91e-111 | FFCP PHASE1:Hg19::chr17:59469536..59469541,+#_081e426245ad66293813d6fcf8b456b6 | p@chr17:59469536..59469541, + |
| 8.91e-111 | FFCP PHASE1:Hg19::chr13:23733194..23733206,+#_081e426245ad66293813d6fcf8b456b6 | p@chr13:23733194..23733206, + |
| 8.91e-111 | FFCP PHASE2:Hg19::chr20:52482691..52482707,-#_081e426245ad66293813d6fcf8b456b6 | p@chr20:52482691..52482707, - |
| 8.91e-111 | FFCP PHASE2:Hg19::chr17:59469536..59469541,+#_081e426245ad66293813d6fcf8b456b6 | p@chr17:59469536..59469541, + |
| 8.91e-111 | FFCP PHASE1:Hg19::chr20:52482691..52482707,-#_081e426245ad66293813d6fcf8b456b6 | p@chr20:52482691..52482707, - |
| 1.3e-110 | FFCP PHASE2:Hg19::chr5:177505250..177505293,-#_56120d4b932f8e7b4be4d9d7188ab9dd | p@chr5:177505250..177505293, - |
| 1.3e-110 | FFCP PHASE1:Hg19::chr5:177505250..177505293,-#_56120d4b932f8e7b4be4d9d7188ab9dd | p@chr5:177505250..177505293, - |
| 3.03e-99 | FFCP PHASE2:Hg19::chr3:129226494..129226510,+#_5314e536b386a02d04ff2081b73a5cd3 | p@chr3:129226494..129226510, + |
| 3.03e-99 | FFCP PHASE1:Hg19::chr3:129226494..129226510,+#_5314e536b386a02d04ff2081b73a5cd3 | p@chr3:129226494..129226510, + |
| 5.02e-99 | FFCP PHASE1:Hg19::chr14:38064198..38064200,-#_5c25ae24124209456fe9e98c0e759b58 | p11@FOXA1 |
| 5.02e-99 | FFCP PHASE2:Hg19::chr14:38064198..38064200,-#_5c25ae24124209456fe9e98c0e759b58 | p11@FOXA1 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr17:65990543..65990553,-#_fc0367bad6983f07fd20523cac89ccce | p@chr17:65990543..65990553, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr19:15674459..15674486,+#_fc0367bad6983f07fd20523cac89ccce | p@chr19:15674459..15674486, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr1:96504230..96504238,-#_fc0367bad6983f07fd20523cac89ccce | p@chr1:96504230..96504238, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr10:9012105..9012111,+#_fc0367bad6983f07fd20523cac89ccce | p3@ENST00000456526 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr19:15674459..15674486,+#_fc0367bad6983f07fd20523cac89ccce | p@chr19:15674459..15674486, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr10:9012105..9012111,+#_fc0367bad6983f07fd20523cac89ccce | p3@ENST00000456526 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr10:19498455..19498482,+#_fc0367bad6983f07fd20523cac89ccce | p@chr10:19498455..19498482, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr17:65990543..65990553,-#_fc0367bad6983f07fd20523cac89ccce | p@chr17:65990543..65990553, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr13:23583578..23583586,+#_fc0367bad6983f07fd20523cac89ccce | p@chr13:23583578..23583586, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr10:19498455..19498482,+#_fc0367bad6983f07fd20523cac89ccce | p@chr10:19498455..19498482, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:96504230..96504238,-#_fc0367bad6983f07fd20523cac89ccce | p@chr1:96504230..96504238, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr13:23583578..23583586,+#_fc0367bad6983f07fd20523cac89ccce | p@chr13:23583578..23583586, + |
| 4.23e-89 | FFCP PHASE1:Hg19::chr8:91871545..91871568,-#_724532ea0aa183464a6c808a1bde8ffe | p3@ENST00000517884 |
| 4.23e-89 | FFCP PHASE2:Hg19::chr8:91871545..91871568,-#_724532ea0aa183464a6c808a1bde8ffe | p3@ENST00000517884 |
| 7.73e-89 | FFCP PHASE2:Hg19::chr3:161089631..161089635,+#_54699095806a701fcc65b3e4492c7093 | p@chr3:161089631..161089635, + |
| 7.73e-89 | FFCP PHASE1:Hg19::chr3:161089631..161089635,+#_54699095806a701fcc65b3e4492c7093 | p@chr3:161089631..161089635, + |
| 1.46e-88 | FFCP PHASE2:Hg19::chr10:8091813..8091823,+#_29e6171f51d64455c1482369962760ab | p@chr10:8091813..8091823, + |
| 1.46e-88 | FFCP PHASE1:Hg19::chr10:8091813..8091823,+#_29e6171f51d64455c1482369962760ab | p@chr10:8091813..8091823, + |
| 2.57e-88 | FFCP PHASE2:Hg19::chr15:88119982..88120003,+#_c1d834415c10b14bad0afc01936e4875 | p2@LINC00052 |
| 2.57e-88 | FFCP PHASE1:Hg19::chr15:88119982..88120003,+#_c1d834415c10b14bad0afc01936e4875 | p2@LINC00052 |
| 5.61e-88 | FFCP PHASE1:Hg19::chr1:6488281..6488301,+#_3646c7d0bfde4495dd85e528ef2a3620 | p@chr1:6488281..6488301, + |
| 5.61e-88 | FFCP PHASE2:Hg19::chr1:6488281..6488301,+#_3646c7d0bfde4495dd85e528ef2a3620 | p@chr1:6488281..6488301, + |
| 1.74e-79 | FFCP PHASE1:Hg19::chr8:95653861..95653872,+#_4971d40914e3e9e456411792880a445e | p10@ESRP1 |
| 1.74e-79 | FFCP PHASE2:Hg19::chr8:95653861..95653872,+#_4971d40914e3e9e456411792880a445e | p10@ESRP1 |
| 1.21e-74 | FFCP PHASE1:Hg19::chr16:78085184..78085211,+#_5face28992c33e2a9359ca57053545e2 | p@chr16:78085184..78085211, + |
| 1.21e-74 | FFCP PHASE1:Hg19::chr12:53359307..53359335,+#_5face28992c33e2a9359ca57053545e2 | p@chr12:53359307..53359335, + |
| 1.21e-74 | FFCP PHASE2:Hg19::chr12:53359307..53359335,+#_5face28992c33e2a9359ca57053545e2 | p@chr12:53359307..53359335, + |
| 1.21e-74 | FFCP PHASE2:Hg19::chr16:78085184..78085211,+#_5face28992c33e2a9359ca57053545e2 | p@chr16:78085184..78085211, + |
| 1.56e-74 | FFCP PHASE1:Hg19::chr1:150953891..150953894,+#_f3b027d2934f65bc59d9ff1aa0ac4556 | p@chr1:150953891..150953894, + |
| 1.56e-74 | FFCP PHASE2:Hg19::chr1:150953891..150953894,+#_f3b027d2934f65bc59d9ff1aa0ac4556 | p@chr1:150953891..150953894, + |
| 2.58e-74 | FFCP PHASE2:Hg19::chr14:100485738..100485745,+#_8027e7efe7418a985e4a89e86c9f16da | p37@EVL |
| 2.58e-74 | FFCP PHASE2:Hg19::chr11:61280885..61280904,-#_8027e7efe7418a985e4a89e86c9f16da | p@chr11:61280885..61280904, - |
| 2.58e-74 | FFCP PHASE1:Hg19::chr14:100485738..100485745,+#_8027e7efe7418a985e4a89e86c9f16da | p37@EVL |
| 2.58e-74 | FFCP PHASE1:Hg19::chr11:61280885..61280904,-#_8027e7efe7418a985e4a89e86c9f16da | p@chr11:61280885..61280904, - |
| 2.58e-74 | FFCP PHASE2:Hg19::chr9:137258939..137258945,+#_8027e7efe7418a985e4a89e86c9f16da | p@chr9:137258939..137258945, + |
| 2.58e-74 | FFCP PHASE1:Hg19::chr9:137258939..137258945,+#_8027e7efe7418a985e4a89e86c9f16da | p@chr9:137258939..137258945, + |
| 7.4e-73 | FFCP PHASE1:Hg19::chr14:38065203..38065215,-#_3147bae7411447d51eecc459e1e37ec7 | p9@FOXA1 |
| 7.4e-73 | FFCP PHASE2:Hg19::chr14:38065203..38065215,-#_3147bae7411447d51eecc459e1e37ec7 | p9@FOXA1 |
| 3.22e-72 | FFCP PHASE2:Hg19::chr20:49241036..49241049,-#_f562899dd77c4f32c98f52fc5aae63bb | p@chr20:49241036..49241049, - |
| 3.22e-72 | FFCP PHASE1:Hg19::chr20:49241036..49241049,-#_f562899dd77c4f32c98f52fc5aae63bb | p@chr20:49241036..49241049, - |
| 4.11e-67 | FFCP PHASE2:Hg19::chr14:105267423..105267443,+#_f7b184a079a643cf64cda84583c2f232 | p2@ZBTB42 |
| 4.11e-67 | FFCP PHASE1:Hg19::chr14:105267423..105267443,+#_f7b184a079a643cf64cda84583c2f232 | p2@ZBTB42 |
| 9.57e-67 | FFCP PHASE2:Hg19::chr10:8096323..8096329,-#_2a1a5471b3185138ba2f426844889fb0 | p@chr10:8096323..8096329, - |
| 9.57e-67 | FFCP PHASE1:Hg19::chr10:8096323..8096329,-#_2a1a5471b3185138ba2f426844889fb0 | p@chr10:8096323..8096329, - |
| 2.4e-66 | FFCP PHASE1:Hg19::chr20:49347538..49347547,-#_587d67067fe7a591b1a596169e64179d | p@chr20:49347538..49347547, - |
| 2.4e-66 | FFCP PHASE2:Hg19::chr9:140506839..140506847,+#_587d67067fe7a591b1a596169e64179d | p9@ARRDC1 |
| 2.4e-66 | FFCP PHASE2:Hg19::chr10:109305043..109305046,+#_587d67067fe7a591b1a596169e64179d | p@chr10:109305043..109305046, + |
| 2.4e-66 | FFCP PHASE1:Hg19::chr7:80551671..80551680,-#_587d67067fe7a591b1a596169e64179d | p38@SEMA3C |
| 2.4e-66 | FFCP PHASE2:Hg19::chr10:118030368..118030379,+#_587d67067fe7a591b1a596169e64179d | p@chr10:118030368..118030379, + |
| 2.4e-66 | FFCP PHASE2:Hg19::chr20:49347538..49347547,-#_587d67067fe7a591b1a596169e64179d | p@chr20:49347538..49347547, - |
| 2.4e-66 | FFCP PHASE2:Hg19::chr10:9238697..9238718,-#_587d67067fe7a591b1a596169e64179d | p@chr10:9238697..9238718, - |
| 2.4e-66 | FFCP PHASE1:Hg19::chr10:109305043..109305046,+#_587d67067fe7a591b1a596169e64179d | p@chr10:109305043..109305046, + |
