CL:1000507: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{CL
|id=CL:1000507
|name=kidney tubule cell
|namespace=cell
|def=
|xref=KUPO:0001020
|is_a=CL:1000497
|synonym=
|comment=
|alt_id=
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Revision as of 17:42, 15 June 2012
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:1000497(kidney cell) |
|---|---|
| part_of: | UBERON:0001231(nephron tubule) |
Children
| is a: | CL:1000494 (nephron tubule epithelial cell) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11515-119H3 (Renal Proximal Tubular Epithelial Cell, donor1)
- 11516-119H4 (Renal Cortical Epithelial Cells, donor1)
- 11517-119H5 (Renal Epithelial Cells, donor1)
- 11518-119H6 (Renal Mesangial Cells, donor1)
- 11595-120H2 (Renal Proximal Tubular Epithelial Cell, donor2)
- 11596-120H3 (Renal Cortical Epithelial Cells, donor2)
- 11597-120H4 (Renal Epithelial Cells, donor2)
- 11598-120H5 (Renal Mesangial Cells, donor2)
- 11676-122H2 (Renal Proximal Tubular Epithelial Cell, donor3)
- 11677-122H3
... further results Mouse (Mus musculus)
- 11515-119H3 (Renal Proximal Tubular Epithelial Cell, donor1)
- 11516-119H4 (Renal Cortical Epithelial Cells, donor1)
- 11517-119H5 (Renal Epithelial Cells, donor1)
- 11518-119H6 (Renal Mesangial Cells, donor1)
- 11595-120H2 (Renal Proximal Tubular Epithelial Cell, donor2)
- 11596-120H3 (Renal Cortical Epithelial Cells, donor2)
- 11597-120H4 (Renal Epithelial Cells, donor2)
- 11598-120H5 (Renal Mesangial Cells, donor2)
- 11676-122H2 (Renal Proximal Tubular Epithelial Cell, donor3)
- 11677-122H3
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:1000507 (kidney tubule cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.6e-125 | FFCP PHASE1:Hg19::chr15:66420804..66420837,-#_5d919f9c0c956e9af1f3595614482dfd | p4@MEGF11 |
| 3.6e-125 | FFCP PHASE2:Hg19::chr15:66420804..66420837,-#_5d919f9c0c956e9af1f3595614482dfd | p4@MEGF11 |
| 4.27e-99 | FFCP PHASE2:Hg19::chr1:1100457..1100470,+#_b0fec9e65f665abb6fbc2e739809906c | p@chr1:1100457..1100470, + |
| 4.27e-99 | FFCP PHASE1:Hg19::chr1:1100457..1100470,+#_b0fec9e65f665abb6fbc2e739809906c | p@chr1:1100457..1100470, + |
| 6.34e-89 | FFCP PHASE1:Hg19::chr2:693380..693398,+#_ae0e71e7228ae7bd8c61940420541cb3 | p@chr2:693380..693398, + |
| 6.34e-89 | FFCP PHASE2:Hg19::chr2:693380..693398,+#_ae0e71e7228ae7bd8c61940420541cb3 | p@chr2:693380..693398, + |
| 6.95e-79 | FFCP PHASE2:Hg19::chr1:81001398..81001426,+#_9f60afaaf4aa9555f29e3dfab971eba6 | p1@ENST00000418041, p1@ENST00000443104 |
| 6.95e-79 | FFCP PHASE1:Hg19::chr1:81001398..81001426,+#_9f60afaaf4aa9555f29e3dfab971eba6 | p1@ENST00000418041, p1@ENST00000443104 |
| 1.14e-78 | FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_757e54cb66526a522c650fda8a9dd376 | p7@HOXA10 |
| 1.14e-78 | FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_757e54cb66526a522c650fda8a9dd376 | p7@HOXA10 |
| 2.82e-76 | FFCP PHASE1:Hg19::chr7:7606139..7606151,-#_89ca192ce92140796298d7ac452e72e2 | p@chr7:7606139..7606151, - |
| 2.82e-76 | FFCP PHASE2:Hg19::chr7:7606139..7606151,-#_89ca192ce92140796298d7ac452e72e2 | p@chr7:7606139..7606151, - |
| 2.46e-75 | FFCP PHASE2:Hg19::chr10:102505954..102505973,+#_6c1dc9065d0eb9a852c26903f4f57fc1 | p3@PAX2 |
| 2.46e-75 | FFCP PHASE1:Hg19::chr10:102505954..102505973,+#_6c1dc9065d0eb9a852c26903f4f57fc1 | p3@PAX2 |
| 2.88e-75 | FFCP PHASE2:Hg19::chr18:3456189..3456200,+#_449e375e91425d63fcd53749ff6a5c53 | p@chr18:3456189..3456200, + |
| 2.88e-75 | FFCP PHASE1:Hg19::chr18:3456189..3456200,+#_449e375e91425d63fcd53749ff6a5c53 | p@chr18:3456189..3456200, + |
| 1.48e-74 | FFCP PHASE2:Hg19::chr21:41029235..41029269,+#_060772d3d24e16d6a471b83de96285b6 | p2@B3GALT5 |
| 1.48e-74 | FFCP PHASE1:Hg19::chr21:41029235..41029269,+#_060772d3d24e16d6a471b83de96285b6 | p2@B3GALT5 |
| 2.7e-74 | FFCP PHASE1:Hg19::chr7:140227349..140227360,-#_ae3e0b5b6a35cc332f4ad235227b3402 | p@chr7:140227349..140227360, - |
| 2.7e-74 | FFCP PHASE2:Hg19::chr7:140227349..140227360,-#_ae3e0b5b6a35cc332f4ad235227b3402 | p@chr7:140227349..140227360, - |
| 5.32e-74 | FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_835b5e46207e5dfb50e87b9a62b81f98 | p4@PAX2 |
| 5.32e-74 | FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_835b5e46207e5dfb50e87b9a62b81f98 | p4@PAX2 |
| 5.85e-74 | FFCP PHASE2:Hg19::chr9:133986782..133986794,+#_d83f93a8cdac6ef48ba6ca8ed8bee7e5 | p4@AIF1L |
| 5.85e-74 | FFCP PHASE1:Hg19::chr9:133986782..133986794,+#_d83f93a8cdac6ef48ba6ca8ed8bee7e5 | p4@AIF1L |
| 1.31e-72 | FFCP PHASE2:Hg19::chr20:6034607..6034616,-#_dc21497229244c12bda84aed3c3f02a1 | p6@LRRN4 |
| 1.31e-72 | FFCP PHASE1:Hg19::chr20:6034607..6034616,-#_dc21497229244c12bda84aed3c3f02a1 | p6@LRRN4 |
| 1.88e-70 | FFCP PHASE2:Hg19::chr20:6033532..6033548,-#_6b149fce1852efac12cdcb487d012410 | p2@AB527789 |
| 1.88e-70 | FFCP PHASE1:Hg19::chr20:6033532..6033548,-#_6b149fce1852efac12cdcb487d012410 | p2@AB527789 |
| 1.06e-64 | FFCP PHASE2:Hg19::chr16:3068288..3068312,-#_d166b869ad6ad889fe184a47be35f980 | p2@CLDN6 |
| 1.06e-64 | FFCP PHASE1:Hg19::chr16:3068288..3068312,-#_d166b869ad6ad889fe184a47be35f980 | p2@CLDN6 |
| 2.76e-64 | FFCP PHASE2:Hg19::chr7:98453821..98453843,-#_49d69fcabc749fc02e2660895d4156e3 | p@chr7:98453821..98453843, - |
| 2.76e-64 | FFCP PHASE1:Hg19::chr7:98453821..98453843,-#_49d69fcabc749fc02e2660895d4156e3 | p@chr7:98453821..98453843, - |
| 1.24e-63 | FFCP PHASE2:Hg19::chr16:86604624..86604648,+#_08c248a2c2f45b92629b7572ad51b4b7 | p@chr16:86604624..86604648, + |
| 1.24e-63 | FFCP PHASE1:Hg19::chr16:86604624..86604648,+#_08c248a2c2f45b92629b7572ad51b4b7 | p@chr16:86604624..86604648, + |
| 4.48e-60 | FFCP PHASE2:Hg19::chr9:133986807..133986821,+#_a71755e8f4679cda86110dd41dc70c8c | p3@AIF1L |
| 4.48e-60 | FFCP PHASE1:Hg19::chr9:133986807..133986821,+#_a71755e8f4679cda86110dd41dc70c8c | p3@AIF1L |
| 1.1e-59 | FFCP PHASE2:Hg19::chr1:20465872..20465881,+#_0a3e84dc3655d12a965a1f140ef7c31f | p2@PLA2G2F |
| 1.1e-59 | FFCP PHASE1:Hg19::chr1:20465872..20465881,+#_0a3e84dc3655d12a965a1f140ef7c31f | p2@PLA2G2F |
| 2.05e-59 | FFCP PHASE2:Hg19::chr2:31361432..31361442,-#_242255cdfc896344b9930c51679eeab7 | p6@GALNT14 |
| 2.05e-59 | FFCP PHASE1:Hg19::chr2:31361432..31361442,-#_242255cdfc896344b9930c51679eeab7 | p6@GALNT14 |
| 8.36e-59 | FFCP PHASE2:Hg19::chr20:6033120..6033128,-#_aa2ae09833e83fe6e8d35338fb26dcec | p4@AB527789 |
| 8.36e-59 | FFCP PHASE1:Hg19::chr20:6033120..6033128,-#_aa2ae09833e83fe6e8d35338fb26dcec | p4@AB527789 |
| 7.62e-57 | FFCP PHASE2:Hg19::chr7:27219754..27219759,-#_b75016060dbd2828d002130a448566ce | p16@HOXA10 |
| 7.62e-57 | FFCP PHASE1:Hg19::chr7:27219754..27219759,-#_b75016060dbd2828d002130a448566ce | p16@HOXA10 |
| 1.32e-55 | FFCP PHASE2:Hg19::chr21:46826248..46826282,-#_066529dbd28ce713c714ef2b7fc8b1a9 | p@chr21:46826248..46826282, - |
| 1.32e-55 | FFCP PHASE1:Hg19::chr21:46826248..46826282,-#_066529dbd28ce713c714ef2b7fc8b1a9 | p@chr21:46826248..46826282, - |
| 6.62e-55 | FFCP PHASE2:Hg19::chr2:693362..693373,+#_d9e865ed101b28ff55530a9be3d6835e | p@chr2:693362..693373, + |
| 6.62e-55 | FFCP PHASE1:Hg19::chr2:693362..693373,+#_d9e865ed101b28ff55530a9be3d6835e | p@chr2:693362..693373, + |
| 1.99e-53 | FFCP PHASE2:Hg19::chr17:36104873..36104903,-#_1bf2c71a48f9e4aa8440cf2127da790b | p3@HNF1B |
| 1.99e-53 | FFCP PHASE1:Hg19::chr17:36104873..36104903,-#_1bf2c71a48f9e4aa8440cf2127da790b | p3@HNF1B |
| 7.76e-53 | FFCP PHASE1:Hg19::chr10:102505493..102505546,+#_2cda2cb0f8c442f89272b23b5e9a0377 | p2@PAX2 |
| 7.76e-53 | FFCP PHASE2:Hg19::chr10:102505493..102505546,+#_2cda2cb0f8c442f89272b23b5e9a0377 | p2@PAX2 |
| 2.69e-52 | FFCP PHASE2:Hg19::chr9:71735910..71735923,+#_ee49b048bb228663e2219d74f4490810 | p16@TJP2 |
| 2.69e-52 | FFCP PHASE1:Hg19::chr9:71735910..71735923,+#_ee49b048bb228663e2219d74f4490810 | p16@TJP2 |
| 1.51e-50 | FFCP PHASE2:Hg19::chr14:57960456..57960478,-#_74fad57fd10f5962865eb0d7fa3f020c | p2@C14orf105 |
| 1.51e-50 | FFCP PHASE1:Hg19::chr14:57960456..57960478,-#_74fad57fd10f5962865eb0d7fa3f020c | p2@C14orf105 |
| 2.93e-50 | FFCP PHASE2:Hg19::chr3:190105935..190105966,+#_bb1694b85ac71257248847793df264f0 | p1@CLDN16 |
| 2.93e-50 | FFCP PHASE1:Hg19::chr3:190105935..190105966,+#_bb1694b85ac71257248847793df264f0 | p1@CLDN16 |
| 4.36e-50 | FFCP PHASE2:Hg19::chr5:74244100..74244117,+#_349fcd165037ac7262d2bfe06ccb88f9 | p@chr5:74244100..74244117, + |
| 4.36e-50 | FFCP PHASE1:Hg19::chr5:74244100..74244117,+#_349fcd165037ac7262d2bfe06ccb88f9 | p@chr5:74244100..74244117, + |
| 4.9e-49 | FFCP PHASE2:Hg19::chr7:140227303..140227330,-#_bea46b9d325cd02a4579d44a36a9152d | p@chr7:140227303..140227330, - |
| 4.9e-49 | FFCP PHASE1:Hg19::chr7:140227303..140227330,-#_bea46b9d325cd02a4579d44a36a9152d | p@chr7:140227303..140227330, - |
| 3.7e-48 | FFCP PHASE2:Hg19::chr7:7606153..7606181,-#_2dc691f1cf6af47173627265eb4ec949 | p@chr7:7606153..7606181, - |
| 3.7e-48 | FFCP PHASE1:Hg19::chr7:7606153..7606181,-#_2dc691f1cf6af47173627265eb4ec949 | p@chr7:7606153..7606181, - |
| 8.06e-47 | FFCP PHASE2:Hg19::chr17:35293932..35293947,-#_250f5a0f578d2805b286fbf297c5c74b | p2@ENST00000529264 |
| 8.06e-47 | FFCP PHASE1:Hg19::chr17:35293932..35293947,-#_250f5a0f578d2805b286fbf297c5c74b | p2@ENST00000529264 |
| 8.19e-47 | FFCP PHASE2:Hg19::chr6:24358114..24358125,-#_820aaf3ef44124c874c5cf8d368e7825 | p4@DCDC2 |
| 8.19e-47 | FFCP PHASE1:Hg19::chr6:24358114..24358125,-#_820aaf3ef44124c874c5cf8d368e7825 | p4@DCDC2 |
| 1.44e-46 | FFCP PHASE1:Hg19::chr2:177016336..177016350,+#_79b7865a1c31196b339222eda641086f | p1@HOXD4 |
| 1.44e-46 | FFCP PHASE2:Hg19::chr2:177016336..177016350,+#_79b7865a1c31196b339222eda641086f | p1@HOXD4 |
| 3.39e-46 | FFCP PHASE1:Hg19::chr7:27219849..27219867,-#_b16338c761396823760e1387c1f4ffd8 | p6@HOXA10 |
| 3.39e-46 | FFCP PHASE2:Hg19::chr7:27219849..27219867,-#_b16338c761396823760e1387c1f4ffd8 | p6@HOXA10 |
| 5.96e-46 | FFCP PHASE2:Hg19::chr20:6034576..6034592,-#_682c0530bf43a0dae8a66fd7856022ce | p3@LRRN4 |
| 5.96e-46 | FFCP PHASE1:Hg19::chr20:6034576..6034592,-#_682c0530bf43a0dae8a66fd7856022ce | p3@LRRN4 |
| 1.77e-45 | FFCP PHASE2:Hg19::chr2:165603346..165603357,-#_f6fd8703624b153862fad236876c70ab | p@chr2:165603346..165603357, - |
| 1.77e-45 | FFCP PHASE1:Hg19::chr2:165603346..165603357,-#_f6fd8703624b153862fad236876c70ab | p@chr2:165603346..165603357, - |
| 5.1e-45 | FFCP PHASE2:Hg19::chr6:30890599..30890626,+#_dc8e11703c2459e021b42938a952c1a4 | p4@VARS2 |
| 5.1e-45 | FFCP PHASE1:Hg19::chr6:30890599..30890626,+#_dc8e11703c2459e021b42938a952c1a4 | p4@VARS2 |
| 5.13e-45 | FFCP PHASE2:Hg19::chr9:133986740..133986750,+#_9aca43c377bd907f18f5bbd9b448939d | p7@AIF1L |
| 5.13e-45 | FFCP PHASE1:Hg19::chr9:133986740..133986750,+#_9aca43c377bd907f18f5bbd9b448939d | p7@AIF1L |
| 5.16e-45 | FFCP PHASE2:Hg19::chr20:62327738..62327751,+#_5782369138015f03ae98d021c54b970a | p2@TNFRSF6B |
| 5.16e-45 | FFCP PHASE1:Hg19::chr20:62327738..62327751,+#_5782369138015f03ae98d021c54b970a | p2@TNFRSF6B |
| 6.97e-45 | FFCP PHASE1:Hg19::chr9:112260040..112260045,+#_b789f121c15f9e1213429f8cdff7daed | p@chr9:112260040..112260045, + |
| 6.97e-45 | FFCP PHASE2:Hg19::chr9:112260040..112260045,+#_b789f121c15f9e1213429f8cdff7daed | p@chr9:112260040..112260045, + |
| 7.39e-45 | FFCP PHASE2:Hg19::chr20:6034241..6034256,-#_0c2e033224c1df7f3ccd32af5c3a0ceb | p@chr20:6034241..6034256, - |
| 7.39e-45 | FFCP PHASE1:Hg19::chr20:6034241..6034256,-#_0c2e033224c1df7f3ccd32af5c3a0ceb | p@chr20:6034241..6034256, - |
| 1.28e-44 | FFCP PHASE2:Hg19::chr10:102505312..102505320,+#_e4bebd9fd768aba8caba9d3486c0c344 | p6@PAX2 |
| 1.28e-44 | FFCP PHASE1:Hg19::chr10:102505312..102505320,+#_e4bebd9fd768aba8caba9d3486c0c344 | p6@PAX2 |
| 1.67e-44 | FFCP PHASE1:Hg19::chr9:119741711..119741743,-#_4a4dbc29d090c65d832c736e173d65a2 | p@chr9:119741711..119741743, - |
| 1.67e-44 | FFCP PHASE2:Hg19::chr9:119741711..119741743,-#_4a4dbc29d090c65d832c736e173d65a2 | p@chr9:119741711..119741743, - |
| 4.94e-44 | FFCP PHASE1:Hg19::chr7:27160553..27160560,+#_c99e6fec9f78cbe2a71c567b0366ac47 | p1@ENST00000523364, p1@uc010kux.1 |
| 4.94e-44 | FFCP PHASE2:Hg19::chr7:27160553..27160560,+#_c99e6fec9f78cbe2a71c567b0366ac47 | p1@ENST00000523364, p1@uc010kux.1 |
| 9.32e-44 | FFCP PHASE2:Hg19::chr11:117688216..117688234,-#_10ec82a66f366689933c6d9bc72cf799 | p2@DSCAML1 |
| 9.32e-44 | FFCP PHASE1:Hg19::chr11:117688216..117688234,-#_10ec82a66f366689933c6d9bc72cf799 | p2@DSCAML1 |
| 1.2e-43 | FFCP PHASE2:Hg19::chr1:47655966..47655990,-#_530c85305dd797b0e10fc61932970ef3 | p2@PDZK1IP1 |
| 1.2e-43 | FFCP PHASE1:Hg19::chr1:47655966..47655990,-#_530c85305dd797b0e10fc61932970ef3 | p2@PDZK1IP1 |
| 1.45e-43 | FFCP PHASE1:Hg19::chr11:117695245..117695263,-#_26a1022c4b36ecc402b7b934c108cc90 | p7@FXYD2 |
| 1.45e-43 | FFCP PHASE2:Hg19::chr11:117695245..117695263,-#_26a1022c4b36ecc402b7b934c108cc90 | p7@FXYD2 |
| 5.15e-43 | FFCP PHASE2:Hg19::chr10:91043420..91043437,+#_1814f2578cf3184810063da8b55f4e62 | p1@ENST00000444849 |
| 5.15e-43 | FFCP PHASE1:Hg19::chr10:91043420..91043437,+#_1814f2578cf3184810063da8b55f4e62 | p1@ENST00000444849 |
