CL:0002306: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{CL
|id=CL:0002306
|name=epithelial cell of proximal tubule
|namespace=cell
|def="An epithelial cell of the proximal tubule of the kidney." [GOC:tfm, ISBN:1-4160-2328-3]
...") |
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|namespace=cell | |namespace=cell | ||
|def="An epithelial cell of the proximal tubule of the kidney." [GOC:tfm, ISBN:1-4160-2328-3] | |def="An epithelial cell of the proximal tubule of the kidney." [GOC:tfm, ISBN:1-4160-2328-3] | ||
|xref=FMA:62125;;KUPO:0001044 | |xref=FMA:62125;;FMA:70973;;KUPO:0001044 | ||
|is_a=CL:0000239;;CL:0002078;;CL:1000615 | |is_a=CL:0000239;;CL:0002078;;CL:1000615 | ||
|synonym="kidney proximal tubule epithelial cell" EXACT [] | |synonym="kidney proximal tubule epithelial cell" EXACT [] | ||
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|located_in= | |located_in= | ||
|part_of=UBERON:0004134 | |part_of=UBERON:0004134 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | |||
|is_obsolete= | |||
|preceded_by= | |||
}} | }} | ||
Revision as of 17:40, 15 June 2012
| Name: | epithelial cell of proximal tubule | ||
|---|---|---|---|
| Namespace: | cell | ||
| Definition: | "An epithelial cell of the proximal tubule of the kidney." [GOC:tfm, ISBN:1-4160-2328-3] | ||
| Xrefs: |
| ||
| Synonyms: | "kidney proximal tubule epithelial cell" EXACT [] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000239(brush border epithelial cell),CL:0002078(meso-epithelial cell),CL:1000615(kidney cortex tubule cell) |
|---|---|
| part_of: | UBERON:0004134(proximal tubule) |
Children
| derives from: | FF:0000155 (human renal proximal tubular epithelial cell sample) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11515-119H3 (Renal Proximal Tubular Epithelial Cell, donor1)
- 11595-120H2 (Renal Proximal Tubular Epithelial Cell, donor2)
- 11676-122H2 (Renal Proximal Tubular Epithelial Cell, donor3)
Mouse (Mus musculus)
- 11515-119H3 (Renal Proximal Tubular Epithelial Cell, donor1)
- 11595-120H2 (Renal Proximal Tubular Epithelial Cell, donor2)
- 11676-122H2 (Renal Proximal Tubular Epithelial Cell, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002306 (epithelial cell of proximal tubule), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 8.98e-131 | FFCP PHASE1:Hg19::chr5:167718782..167718785,+#_070083c2c09490497baf71e6363a8e5e | p10@WWC1 |
| 8.98e-131 | FFCP PHASE2:Hg19::chr5:167718782..167718785,+#_070083c2c09490497baf71e6363a8e5e | p10@WWC1 |
| 1.01e-74 | FFCP PHASE2:Hg19::chr3:149260147..149260154,-#_63aea17744b83e2a21fcd895e708808c | p39@WWTR1 |
| 1.01e-74 | FFCP PHASE1:Hg19::chr3:149260147..149260154,-#_63aea17744b83e2a21fcd895e708808c | p39@WWTR1 |
| 1.24e-73 | FFCP PHASE2:Hg19::chr17:46679250..46679298,+#_9d82f414a53d87d4e66ef6447b83c6a0 | p1@ENST00000491264 |
| 1.24e-73 | FFCP PHASE1:Hg19::chr17:46679250..46679298,+#_9d82f414a53d87d4e66ef6447b83c6a0 | p1@ENST00000491264 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr16:61687533..61687551,-#_0ce88925b116fee54578f963f1d860ed | p@chr16:61687533..61687551, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr8:6614884..6614885,+#_0ce88925b116fee54578f963f1d860ed | p@chr8:6614884..6614885, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr16:62055187..62055188,+#_0ce88925b116fee54578f963f1d860ed | p@chr16:62055187..62055188, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr16:61687533..61687551,-#_0ce88925b116fee54578f963f1d860ed | p@chr16:61687533..61687551, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr3:123667850..123667851,+#_0ce88925b116fee54578f963f1d860ed | p@chr3:123667850..123667851, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr16:62055187..62055188,+#_0ce88925b116fee54578f963f1d860ed | p@chr16:62055187..62055188, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr8:6614884..6614885,+#_0ce88925b116fee54578f963f1d860ed | p@chr8:6614884..6614885, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr3:123667850..123667851,+#_0ce88925b116fee54578f963f1d860ed | p@chr3:123667850..123667851, + |
| 1.22e-59 | FFCP PHASE2:Hg19::chr15:66420804..66420837,-#_07a25621bacc4bda87e39a6091eb9def | p4@MEGF11 |
| 1.22e-59 | FFCP PHASE1:Hg19::chr15:66420804..66420837,-#_07a25621bacc4bda87e39a6091eb9def | p4@MEGF11 |
| 3.75e-53 | FFCP PHASE1:Hg19::chr9:114828174..114828179,+#_0606a773ff1d9cd90abec06853cddfc5 | p@chr9:114828174..114828179, + |
| 3.75e-53 | FFCP PHASE2:Hg19::chr9:114828174..114828179,+#_0606a773ff1d9cd90abec06853cddfc5 | p@chr9:114828174..114828179, + |
| 1.65e-46 | FFCP PHASE2:Hg19::chr7:140227349..140227360,-#_f25fc69358b6a563540fc2a3d6d99eab | p@chr7:140227349..140227360, - |
| 1.65e-46 | FFCP PHASE1:Hg19::chr7:140227349..140227360,-#_f25fc69358b6a563540fc2a3d6d99eab | p@chr7:140227349..140227360, - |
| 7.81e-45 | FFCP PHASE1:Hg19::chr6:30890373..30890381,+#_7db05200e154192456f8abe660d49277 | p9@VARS2 |
| 7.81e-45 | FFCP PHASE2:Hg19::chr6:30890373..30890381,+#_7db05200e154192456f8abe660d49277 | p9@VARS2 |
| 6.91e-39 | FFCP PHASE1:Hg19::chr6:30890456..30890482,+#_363f58ddd56cc7a1977ec78fd7c98e53 | p11@VARS2 |
| 6.91e-39 | FFCP PHASE2:Hg19::chr6:30890456..30890482,+#_363f58ddd56cc7a1977ec78fd7c98e53 | p11@VARS2 |
| 1.49e-38 | FFCP PHASE2:Hg19::chr11:33718564..33718585,-#_0ed3539d7048387a91afbaa3e813def0 | p1@ENST00000534431 |
| 1.49e-38 | FFCP PHASE1:Hg19::chr11:33718564..33718585,-#_0ed3539d7048387a91afbaa3e813def0 | p1@ENST00000534431 |
| 2.64e-38 | FFCP PHASE1:Hg19::chr7:53466339..53466356,-#_33646693557353713012cb0cfb231a83 | p@chr7:53466339..53466356, - |
| 2.64e-38 | FFCP PHASE2:Hg19::chr7:53466339..53466356,-#_33646693557353713012cb0cfb231a83 | p@chr7:53466339..53466356, - |
| 3.48e-38 | FFCP PHASE1:Hg19::chr17:18160552..18160565,-#_1e9c23203d1b4a636f5fcded3d53cd95 | p@chr17:18160552..18160565, - |
| 3.48e-38 | FFCP PHASE2:Hg19::chr17:18160552..18160565,-#_1e9c23203d1b4a636f5fcded3d53cd95 | p@chr17:18160552..18160565, - |
| 3.86e-38 | FFCP PHASE1:Hg19::chr3:190105820..190105829,+#_33d4c902de9a59a463e3e0b737c08332 | p3@CLDN16 |
| 3.86e-38 | FFCP PHASE2:Hg19::chr3:190105820..190105829,+#_33d4c902de9a59a463e3e0b737c08332 | p3@CLDN16 |
| 5.76e-38 | FFCP PHASE2:Hg19::chr1:1100457..1100470,+#_563eb77dc64953a03305c6d64d4d3029 | p@chr1:1100457..1100470, + |
| 5.76e-38 | FFCP PHASE1:Hg19::chr1:1100457..1100470,+#_563eb77dc64953a03305c6d64d4d3029 | p@chr1:1100457..1100470, + |
| 2.08e-36 | FFCP PHASE2:Hg19::chr9:133986782..133986794,+#_f23856de3ad92c840a02f6e228966891 | p4@AIF1L |
| 2.08e-36 | FFCP PHASE1:Hg19::chr9:133986782..133986794,+#_f23856de3ad92c840a02f6e228966891 | p4@AIF1L |
| 2.25e-35 | FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_1d14af0c09c69c2e083942cf397b5709 | p4@PAX2 |
| 2.25e-35 | FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_1d14af0c09c69c2e083942cf397b5709 | p4@PAX2 |
| 3.2e-35 | FFCP PHASE2:Hg19::chr12:6485243..6485254,-#_1b749a3423cceac3e2bb04bdee996ae9 | p18@SCNN1A |
| 3.2e-35 | FFCP PHASE1:Hg19::chr12:6485243..6485254,-#_1b749a3423cceac3e2bb04bdee996ae9 | p18@SCNN1A |
| 5.96e-34 | FFCP PHASE2:Hg19::chr6:31023284..31023287,-#_081b7d1b32adcbcd4c6fde4707f8afd5 | p@chr6:31023284..31023287, - |
| 5.96e-34 | FFCP PHASE1:Hg19::chr6:31023284..31023287,-#_081b7d1b32adcbcd4c6fde4707f8afd5 | p@chr6:31023284..31023287, - |
| 2.09e-33 | FFCP PHASE1:Hg19::chr2:113994209..113994222,-#_aa8130b272117ea19b18cc7ca76efa19 | p11@PAX8 |
| 2.09e-33 | FFCP PHASE2:Hg19::chr2:113994209..113994222,-#_aa8130b272117ea19b18cc7ca76efa19 | p11@PAX8 |
| 1.41e-32 | FFCP PHASE2:Hg19::chr14:57960456..57960478,-#_1f4f03965f8da919a1287785fdbd9b08 | p2@C14orf105 |
| 1.41e-32 | FFCP PHASE1:Hg19::chr14:57960456..57960478,-#_1f4f03965f8da919a1287785fdbd9b08 | p2@C14orf105 |
| 2.17e-32 | FFCP PHASE2:Hg19::chr3:190105935..190105966,+#_19e67eda8d07770660e1aef1a19d7a35 | p1@CLDN16 |
| 2.17e-32 | FFCP PHASE1:Hg19::chr3:190105935..190105966,+#_19e67eda8d07770660e1aef1a19d7a35 | p1@CLDN16 |
| 3.1e-30 | FFCP PHASE2:Hg19::chr3:112127710..112127713,-#_65f329c9ce0f65072f2d9204e2826496 | p@chr3:112127710..112127713, - |
| 3.1e-30 | FFCP PHASE1:Hg19::chr3:112127710..112127713,-#_65f329c9ce0f65072f2d9204e2826496 | p@chr3:112127710..112127713, - |
| 4.84e-30 | FFCP PHASE1:Hg19::chr20:49347516..49347535,-#_967823544e4152f149934d5c1e6e0628 | p@chr20:49347516..49347535, - |
| 4.84e-30 | FFCP PHASE2:Hg19::chr20:49347516..49347535,-#_967823544e4152f149934d5c1e6e0628 | p@chr20:49347516..49347535, - |
| 6.17e-30 | FFCP PHASE2:Hg19::chr6:30890348..30890372,+#_668e70f9fcf7a006778b2603ffee16a4 | p5@VARS2 |
| 6.17e-30 | FFCP PHASE1:Hg19::chr6:30890348..30890372,+#_668e70f9fcf7a006778b2603ffee16a4 | p5@VARS2 |
| 8.26e-30 | FFCP PHASE1:Hg19::chr9:133986807..133986821,+#_e10735510cbd7779b4ed6aa0b18851c6 | p3@AIF1L |
| 8.26e-30 | FFCP PHASE2:Hg19::chr9:133986807..133986821,+#_e10735510cbd7779b4ed6aa0b18851c6 | p3@AIF1L |
| 8.74e-30 | FFCP PHASE2:Hg19::chr3:190106002..190106011,+#_b4f57100dba35d08bf2ff8d4f868ef34 | p4@CLDN16 |
| 8.74e-30 | FFCP PHASE1:Hg19::chr3:190106002..190106011,+#_b4f57100dba35d08bf2ff8d4f868ef34 | p4@CLDN16 |
| 4.28e-29 | FFCP PHASE2:Hg19::chr7:7606139..7606151,-#_69cd2656cee6685454cb4eea45b3ad4f | p@chr7:7606139..7606151, - |
| 4.28e-29 | FFCP PHASE1:Hg19::chr7:7606139..7606151,-#_69cd2656cee6685454cb4eea45b3ad4f | p@chr7:7606139..7606151, - |
| 5.09e-29 | FFCP PHASE1:Hg19::chr6:30890599..30890626,+#_675a31a29580312183e92276fd021839 | p4@VARS2 |
| 5.09e-29 | FFCP PHASE2:Hg19::chr6:30890599..30890626,+#_675a31a29580312183e92276fd021839 | p4@VARS2 |
| 4.74e-28 | FFCP PHASE2:Hg19::chr11:117695245..117695263,-#_4ad1de87c7229ea3013fe86e25ac769b | p7@FXYD2 |
| 4.74e-28 | FFCP PHASE1:Hg19::chr11:117695245..117695263,-#_4ad1de87c7229ea3013fe86e25ac769b | p7@FXYD2 |
| 2.38e-27 | FFCP PHASE2:Hg19::chr11:117695233..117695244,-#_ef99cbf3c466eca6bde98cd667284b01 | p11@FXYD2 |
| 2.38e-27 | FFCP PHASE1:Hg19::chr11:117695233..117695244,-#_ef99cbf3c466eca6bde98cd667284b01 | p11@FXYD2 |
| 3.11e-27 | FFCP PHASE2:Hg19::chr10:91043499..91043510,+#_56e07e9039e5d3345bc33393646183bc | p2@ENST00000354541 |
| 3.11e-27 | FFCP PHASE1:Hg19::chr10:91043499..91043510,+#_56e07e9039e5d3345bc33393646183bc | p2@ENST00000354541 |
| 5.07e-27 | FFCP PHASE1:Hg19::chr1:17519128..17519138,+#_07bd7f7c2c5f924d6e442316183a5c6c | p@chr1:17519128..17519138, + |
| 5.07e-27 | FFCP PHASE2:Hg19::chr1:17519128..17519138,+#_07bd7f7c2c5f924d6e442316183a5c6c | p@chr1:17519128..17519138, + |
| 1.22e-26 | FFCP PHASE1:Hg19::chr18:77104123..77104150,+#_cb9a8e278e7697b67efe4324fee5d8b4 | p5@ATP9B |
| 1.22e-26 | FFCP PHASE2:Hg19::chr18:77104123..77104150,+#_cb9a8e278e7697b67efe4324fee5d8b4 | p5@ATP9B |
| 2.01e-25 | FFCP PHASE1:Hg19::chr7:98453821..98453843,-#_f9c4d82e4c0e913b570a1edce0880767 | p@chr7:98453821..98453843, - |
| 2.01e-25 | FFCP PHASE2:Hg19::chr7:98453821..98453843,-#_f9c4d82e4c0e913b570a1edce0880767 | p@chr7:98453821..98453843, - |
| 4.31e-25 | FFCP PHASE1:Hg19::chr2:167467988..167467993,-#_fd06a8b12e19d20ff9ab989800c0e534 | p@chr2:167467988..167467993, - |
| 4.31e-25 | FFCP PHASE1:Hg19::chr9:133986740..133986750,+#_fd06a8b12e19d20ff9ab989800c0e534 | p7@AIF1L |
| 4.31e-25 | FFCP PHASE2:Hg19::chr2:167467988..167467993,-#_fd06a8b12e19d20ff9ab989800c0e534 | p@chr2:167467988..167467993, - |
| 4.31e-25 | FFCP PHASE2:Hg19::chr9:133986740..133986750,+#_fd06a8b12e19d20ff9ab989800c0e534 | p7@AIF1L |
| 5.5e-25 | FFCP PHASE1:Hg19::chr2:189157368..189157381,-#_f1dd03102c0879b83096076d0c90fbdc | p@chr2:189157368..189157381, - |
| 5.5e-25 | FFCP PHASE2:Hg19::chr2:189157368..189157381,-#_f1dd03102c0879b83096076d0c90fbdc | p@chr2:189157368..189157381, - |
| 7.93e-25 | FFCP PHASE2:Hg19::chr9:119741711..119741743,-#_2925e035c78d7bfa048cba26030c1cdc | p@chr9:119741711..119741743, - |
| 7.93e-25 | FFCP PHASE1:Hg19::chr9:119741711..119741743,-#_2925e035c78d7bfa048cba26030c1cdc | p@chr9:119741711..119741743, - |
| 8.07e-25 | FFCP PHASE1:Hg19::chr19:51472081..51472088,-#_e547b16a3a3ffe8d9df1633f759dca95 | p8@KLK6 |
| 8.07e-25 | FFCP PHASE2:Hg19::chr19:51472081..51472088,-#_e547b16a3a3ffe8d9df1633f759dca95 | p8@KLK6 |
| 1.21e-24 | FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_37596bb6354fd0930b8b1b6f8197ed01 | p7@HOXA10 |
| 1.21e-24 | FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_37596bb6354fd0930b8b1b6f8197ed01 | p7@HOXA10 |
| 1.29e-24 | FFCP PHASE2:Hg19::chr20:6034241..6034256,-#_d6ddb676f2436c34b70ff16a30db4c2e | p@chr20:6034241..6034256, - |
| 1.29e-24 | FFCP PHASE1:Hg19::chr20:6034241..6034256,-#_d6ddb676f2436c34b70ff16a30db4c2e | p@chr20:6034241..6034256, - |
| 7.91e-24 | FFCP PHASE2:Hg19::chr21:41029235..41029269,+#_2eb7c49ce364cef5841f679cc30b64c1 | p2@B3GALT5 |
| 7.91e-24 | FFCP PHASE2:Hg19::chr11:117695415..117695426,-#_2eb7c49ce364cef5841f679cc30b64c1 | p3@FXYD2 |
| 7.91e-24 | FFCP PHASE1:Hg19::chr11:117695415..117695426,-#_2eb7c49ce364cef5841f679cc30b64c1 | p3@FXYD2 |
| 7.91e-24 | FFCP PHASE1:Hg19::chr21:41029235..41029269,+#_2eb7c49ce364cef5841f679cc30b64c1 | p2@B3GALT5 |
| 9.99e-24 | FFCP PHASE1:Hg19::chr18:3456189..3456200,+#_b413e03daee294bd338c6e3b659df342 | p@chr18:3456189..3456200, + |
| 9.99e-24 | FFCP PHASE2:Hg19::chr18:3456189..3456200,+#_b413e03daee294bd338c6e3b659df342 | p@chr18:3456189..3456200, + |
| 9.99e-24 | FFCP PHASE2:Hg19::chr10:102505954..102505973,+#_b413e03daee294bd338c6e3b659df342 | p3@PAX2 |
| 9.99e-24 | FFCP PHASE1:Hg19::chr10:102505954..102505973,+#_b413e03daee294bd338c6e3b659df342 | p3@PAX2 |
| 3.27e-23 | FFCP PHASE1:Hg19::chr12:6484832..6484841,+#_7e93b10d1349e4068c6938b65c8b3dc9 | p@chr12:6484832..6484841, + |
| 3.27e-23 | FFCP PHASE2:Hg19::chr12:6484832..6484841,+#_7e93b10d1349e4068c6938b65c8b3dc9 | p@chr12:6484832..6484841, + |
| 3.29e-23 | FFCP PHASE2:Hg19::chr3:43532224..43532252,-#_dbb82708653144b94d6f291593aec326 | p@chr3:43532224..43532252, - |
| 3.29e-23 | FFCP PHASE1:Hg19::chr3:43532224..43532252,-#_dbb82708653144b94d6f291593aec326 | p@chr3:43532224..43532252, - |
