CL:0002222: Difference between revisions
From FANTOM5_SSTAR
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|name=vertebrate lens cell
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|def="A cell comprising the transparent, biconvex body separating the posterior chamber and vitreous body, a...") |
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Revision as of 17:40, 15 June 2012
| Name: | vertebrate lens cell | ||
|---|---|---|---|
| Namespace: | cell | ||
| Definition: | "A cell comprising the transparent, biconvex body separating the posterior chamber and vitreous body, and constituting part of the refracting mechanism of the mammalian eye." [GOC:tfm, ISBN:0721662544] | ||
| Xrefs: |
| ||
| Created by: | tmeehan | ||
| Creation date: | 2010-09-07T10:38:03Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000066(epithelial cell),CL:0000306(crystallin accumulating cell),CL:0002371(somatic cell) |
|---|---|
| part_of: | UBERON:0000965(lens of camera-type eye) |
Children
| is a: | CL:0002224 (lens epithelial cell) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10647-109A8 (lens epithelial cell line:SRA 01/04)
- 11529-119I8 (Lens Epithelial Cells, donor1)
- 11609-120I7 (Lens Epithelial Cells, donor2)
- 11690-122I7 (Lens Epithelial Cells, donor3)
Mouse (Mus musculus)
- 10647-109A8 (lens epithelial cell line:SRA 01/04)
- 11529-119I8 (Lens Epithelial Cells, donor1)
- 11609-120I7 (Lens Epithelial Cells, donor2)
- 11690-122I7 (Lens Epithelial Cells, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002222 (vertebrate lens cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.41e-88 | FFCP PHASE2:Hg19::chr22:25595823..25595826,+#_62525fd9efbc11171f3ce554eaac3b37 | p1@CRYBB3 |
| 1.41e-88 | FFCP PHASE1:Hg19::chr22:25595823..25595826,+#_62525fd9efbc11171f3ce554eaac3b37 | p1@CRYBB3 |
| 3.32e-74 | FFCP PHASE1:Hg19::chr22:25615600..25615611,+#_853714fb28d1c53b7501497cd8e1ad1e | p1@CRYBB2 |
| 3.32e-74 | FFCP PHASE2:Hg19::chr22:25615600..25615611,+#_853714fb28d1c53b7501497cd8e1ad1e | p1@CRYBB2 |
| 5.48e-74 | FFCP PHASE2:Hg19::chr19:51891222..51891233,-#_c29434cfd2fb817d51655baf61a2df0a | p1@LIM2 |
| 5.48e-74 | FFCP PHASE1:Hg19::chr19:51891222..51891233,-#_c29434cfd2fb817d51655baf61a2df0a | p1@LIM2 |
| 3.8e-56 | FFCP PHASE2:Hg19::chr22:27017921..27017928,+#_98df0c1d7164d031b01ab5e851941bdc | p1@CRYBA4 |
| 3.8e-56 | FFCP PHASE1:Hg19::chr22:27017921..27017928,+#_98df0c1d7164d031b01ab5e851941bdc | p1@CRYBA4 |
| 3.1e-50 | FFCP PHASE1:Hg19::chr13:104778247..104778293,+#_1b3f1a09c2ace582bf7bc9f441c21a68 | p@chr13:104778247..104778293, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr20:61204240..61204241,+#_1b3f1a09c2ace582bf7bc9f441c21a68 | p@chr20:61204240..61204241, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr13:104778247..104778293,+#_1b3f1a09c2ace582bf7bc9f441c21a68 | p@chr13:104778247..104778293, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr20:61204240..61204241,+#_1b3f1a09c2ace582bf7bc9f441c21a68 | p@chr20:61204240..61204241, + |
| 5.14e-50 | FFCP PHASE2:Hg19::chr14:37642016..37642022,-#_a4397da7f5d422e790ff492d6c59bdce | p7@SLC25A21 |
| 5.14e-50 | FFCP PHASE2:Hg19::chr21:44592820..44592840,-#_a4397da7f5d422e790ff492d6c59bdce | p2@CU686889 |
| 5.14e-50 | FFCP PHASE1:Hg19::chr14:37642016..37642022,-#_a4397da7f5d422e790ff492d6c59bdce | p7@SLC25A21 |
| 5.14e-50 | FFCP PHASE1:Hg19::chr21:44592820..44592840,-#_a4397da7f5d422e790ff492d6c59bdce | p2@CU686889 |
| 6.6e-50 | FFCP PHASE1:Hg19::chr12:132475501..132475504,+#_14d6a5d582228d4791d597aeb4a6f8f4 | p@chr12:132475501..132475504, + |
| 6.6e-50 | FFCP PHASE1:Hg19::chr21:44589339..44589372,-#_14d6a5d582228d4791d597aeb4a6f8f4 | p@chr21:44589339..44589372, - |
| 6.6e-50 | FFCP PHASE2:Hg19::chr21:44592842..44592867,-#_14d6a5d582228d4791d597aeb4a6f8f4 | p1@CU686889 |
| 6.6e-50 | FFCP PHASE2:Hg19::chr12:132475501..132475504,+#_14d6a5d582228d4791d597aeb4a6f8f4 | p@chr12:132475501..132475504, + |
| 6.6e-50 | FFCP PHASE2:Hg19::chr21:44589339..44589372,-#_14d6a5d582228d4791d597aeb4a6f8f4 | p@chr21:44589339..44589372, - |
| 6.6e-50 | FFCP PHASE1:Hg19::chr21:44592842..44592867,-#_14d6a5d582228d4791d597aeb4a6f8f4 | p1@CU686889 |
| 6.27e-44 | FFCP PHASE2:Hg19::chr11:31827535..31827565,-#_9d8bda1a242333c9473d2696560537ee | p11@PAX6 |
| 6.27e-44 | FFCP PHASE1:Hg19::chr11:31827535..31827565,-#_9d8bda1a242333c9473d2696560537ee | p11@PAX6 |
| 1.92e-41 | FFCP PHASE2:Hg19::chr3:186262166..186262170,-#_acc6c5dd78ac300aad523af6bea5fbd0 | p1@CRYGS |
| 1.92e-41 | FFCP PHASE1:Hg19::chr3:186262166..186262170,-#_acc6c5dd78ac300aad523af6bea5fbd0 | p1@CRYGS |
| 4.94e-40 | FFCP PHASE2:Hg19::chr5:112173525..112173532,+#_c7ae718a71e62502e6ccd61a8c64fd44 | p@chr5:112173525..112173532, + |
| 4.94e-40 | FFCP PHASE1:Hg19::chr5:112173525..112173532,+#_c7ae718a71e62502e6ccd61a8c64fd44 | p@chr5:112173525..112173532, + |
| 1.62e-37 | FFCP PHASE2:Hg19::chr1:29586692..29586705,+#_b2b4823a2fc2b395f558f61113b8d576 | p7@PTPRU |
| 1.62e-37 | FFCP PHASE1:Hg19::chr1:29586692..29586705,+#_b2b4823a2fc2b395f558f61113b8d576 | p7@PTPRU |
| 2.1e-35 | FFCP PHASE2:Hg19::chr14:60975644..60975673,+#_75030ec8fa9bdd9976e4f5839e61730b | p3@SIX6 |
| 2.1e-35 | FFCP PHASE1:Hg19::chr14:60975644..60975673,+#_75030ec8fa9bdd9976e4f5839e61730b | p3@SIX6 |
| 6.73e-35 | FFCP PHASE2:Hg19::chr14:60975871..60975880,+#_71c218ffe719484b5124129e7650c4a8 | p4@SIX6 |
| 6.73e-35 | FFCP PHASE1:Hg19::chr14:60975871..60975880,+#_71c218ffe719484b5124129e7650c4a8 | p4@SIX6 |
| 5.06e-34 | FFCP PHASE2:Hg19::chr11:31667372..31667383,-#_244931b2dc4ba9c62e62792062f1b36e | p@chr11:31667372..31667383, - |
| 5.06e-34 | FFCP PHASE1:Hg19::chr11:31667372..31667383,-#_244931b2dc4ba9c62e62792062f1b36e | p@chr11:31667372..31667383, - |
| 8.36e-34 | FFCP PHASE2:Hg19::chr19:1470631..1470648,-#_f4c6e3f23468956be84aad8d230c7555 | p@chr19:1470631..1470648, - |
| 8.36e-34 | FFCP PHASE1:Hg19::chr19:1470631..1470648,-#_f4c6e3f23468956be84aad8d230c7555 | p@chr19:1470631..1470648, - |
| 5.55e-33 | FFCP PHASE2:Hg19::chr21:44589135..44589151,+#_4aa0dd26f84d8b29ecbff14c067b76df | p1@CRYAA |
| 5.55e-33 | FFCP PHASE1:Hg19::chr21:44589135..44589151,+#_4aa0dd26f84d8b29ecbff14c067b76df | p1@CRYAA |
| 9.55e-33 | FFCP PHASE2:Hg19::chr17:27573875..27573878,+#_a340bac2244af98fa7baec405ac0dd67 | p1@CRYBA1 |
| 9.55e-33 | FFCP PHASE1:Hg19::chr17:27573875..27573878,+#_a340bac2244af98fa7baec405ac0dd67 | p1@CRYBA1 |
| 2.74e-29 | FFCP PHASE1:Hg19::chr2:45168589..45168601,-#_9d735e246c8f66e92a89fd0409a28cf6 | p2@ENST00000456467 |
| 2.74e-29 | FFCP PHASE2:Hg19::chr2:45168589..45168601,-#_9d735e246c8f66e92a89fd0409a28cf6 | p2@ENST00000456467 |
| 3.65e-29 | FFCP PHASE1:Hg19::chr7:107883678..107883689,-#_389f029fec4f1b2873f712ecb943a58b | p13@NRCAM |
| 3.65e-29 | FFCP PHASE2:Hg19::chr7:107883678..107883689,-#_389f029fec4f1b2873f712ecb943a58b | p13@NRCAM |
| 7.46e-29 | FFCP PHASE2:Hg19::chr13:114202163..114202178,+#_4a2bf3cf8e3f58ca46c2298e8f3dc2d6 | p@chr13:114202163..114202178, + |
| 7.46e-29 | FFCP PHASE1:Hg19::chr13:114202163..114202178,+#_4a2bf3cf8e3f58ca46c2298e8f3dc2d6 | p@chr13:114202163..114202178, + |
| 1.36e-28 | FFCP PHASE2:Hg19::chr3:173116225..173116242,+#_e81d975bd536f53137979ea64c6c376b | p10@NLGN1 |
| 1.36e-28 | FFCP PHASE1:Hg19::chr3:173116225..173116242,+#_e81d975bd536f53137979ea64c6c376b | p10@NLGN1 |
| 2.64e-27 | FFCP PHASE2:Hg19::chr2:45169233..45169244,+#_251ac97212e5e5888893ba8727b1f547 | p10@SIX3 |
| 2.64e-27 | FFCP PHASE1:Hg19::chr2:45169233..45169244,+#_251ac97212e5e5888893ba8727b1f547 | p10@SIX3 |
| 8.39e-27 | FFCP PHASE2:Hg19::chr14:60975858..60975869,+#_2cd5d3bd88681bb61fceed450e62617b | p2@SIX6 |
| 8.39e-27 | FFCP PHASE1:Hg19::chr14:60975858..60975869,+#_2cd5d3bd88681bb61fceed450e62617b | p2@SIX6 |
| 5.56e-26 | FFCP PHASE1:Hg19::chr1:147374915..147374932,+#_a97d2146e948221d187449ba227eca4c | p1@GJA8 |
| 5.56e-26 | FFCP PHASE2:Hg19::chr19:40920692..40920700,-#_a97d2146e948221d187449ba227eca4c | p@chr19:40920692..40920700, - |
| 5.56e-26 | FFCP PHASE1:Hg19::chr20:35861148..35861151,+#_a97d2146e948221d187449ba227eca4c | p@chr20:35861148..35861151, + |
| 5.56e-26 | FFCP PHASE2:Hg19::chr3:150690809..150690822,-#_a97d2146e948221d187449ba227eca4c | p3@CLRN1 |
| 5.56e-26 | FFCP PHASE1:Hg19::chr9:75848662..75848671,-#_a97d2146e948221d187449ba227eca4c | p@chr9:75848662..75848671, - |
| 5.56e-26 | FFCP PHASE2:Hg19::chrX:43587410..43587413,+#_a97d2146e948221d187449ba227eca4c | p@chrX:43587410..43587413, + |
| 5.56e-26 | FFCP PHASE1:Hg19::chr19:40920692..40920700,-#_a97d2146e948221d187449ba227eca4c | p@chr19:40920692..40920700, - |
| 5.56e-26 | FFCP PHASE2:Hg19::chr1:147374915..147374932,+#_a97d2146e948221d187449ba227eca4c | p1@GJA8 |
| 5.56e-26 | FFCP PHASE1:Hg19::chr3:150690809..150690822,-#_a97d2146e948221d187449ba227eca4c | p3@CLRN1 |
| 5.56e-26 | FFCP PHASE2:Hg19::chr20:35861148..35861151,+#_a97d2146e948221d187449ba227eca4c | p@chr20:35861148..35861151, + |
| 5.56e-26 | FFCP PHASE1:Hg19::chrX:43587410..43587413,+#_a97d2146e948221d187449ba227eca4c | p@chrX:43587410..43587413, + |
| 5.56e-26 | FFCP PHASE2:Hg19::chr9:75848662..75848671,-#_a97d2146e948221d187449ba227eca4c | p@chr9:75848662..75848671, - |
| 7.14e-26 | FFCP PHASE2:Hg19::chr10:73406056..73406065,+#_671f4df912aa5319e038348dd8788347 | p@chr10:73406056..73406065, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr2:45154282..45154288,-#_671f4df912aa5319e038348dd8788347 | p@chr2:45154282..45154288, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr3:156322310..156322314,-#_671f4df912aa5319e038348dd8788347 | p@chr3:156322310..156322314, - |
| 7.14e-26 | FFCP PHASE2:Hg19::chr21:44592788..44592807,+#_671f4df912aa5319e038348dd8788347 | p@chr21:44592788..44592807, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr19:17137781..17137792,-#_671f4df912aa5319e038348dd8788347 | p6@CPAMD8 |
| 7.14e-26 | FFCP PHASE1:Hg19::chr9:100057272..100057276,+#_671f4df912aa5319e038348dd8788347 | p@chr9:100057272..100057276, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr7:123198284..123198329,-#_671f4df912aa5319e038348dd8788347 | p3@NDUFA5 |
| 7.14e-26 | FFCP PHASE1:Hg19::chr21:44592626..44592635,-#_671f4df912aa5319e038348dd8788347 | p5@CU686889 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr1:86064794..86064797,+#_671f4df912aa5319e038348dd8788347 | p1@ENST00000426794 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr1:115873480..115873484,+#_671f4df912aa5319e038348dd8788347 | p@chr1:115873480..115873484, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr13:72440726..72440736,-#_671f4df912aa5319e038348dd8788347 | p19@DACH1 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr5:45038620..45038622,+#_671f4df912aa5319e038348dd8788347 | p@chr5:45038620..45038622, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr5:124468141..124468176,-#_671f4df912aa5319e038348dd8788347 | p@chr5:124468141..124468176, - |
| 7.14e-26 | FFCP PHASE2:Hg19::chr2:693025..693036,+#_671f4df912aa5319e038348dd8788347 | p@chr2:693025..693036, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr2:10538258..10538282,+#_671f4df912aa5319e038348dd8788347 | p@chr2:10538258..10538282, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr2:45154282..45154288,-#_671f4df912aa5319e038348dd8788347 | p@chr2:45154282..45154288, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr21:44592750..44592758,-#_671f4df912aa5319e038348dd8788347 | p4@CU686889 |
| 7.14e-26 | FFCP PHASE1:Hg19::chr4:140656282..140656285,-#_671f4df912aa5319e038348dd8788347 | p@chr4:140656282..140656285, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr1:45769711..45769721,-#_671f4df912aa5319e038348dd8788347 | p@chr1:45769711..45769721, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr10:73406056..73406065,+#_671f4df912aa5319e038348dd8788347 | p@chr10:73406056..73406065, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr5:464155..464205,+#_671f4df912aa5319e038348dd8788347 | p@chr5:464155..464205, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr16:85617064..85617073,-#_671f4df912aa5319e038348dd8788347 | p@chr16:85617064..85617073, - |
| 7.14e-26 | FFCP PHASE2:Hg19::chr21:44592512..44592521,+#_671f4df912aa5319e038348dd8788347 | p@chr21:44592512..44592521, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr20:33903184..33903189,-#_671f4df912aa5319e038348dd8788347 | p11@UQCC |
| 7.14e-26 | FFCP PHASE1:Hg19::chr21:44592358..44592365,+#_671f4df912aa5319e038348dd8788347 | p@chr21:44592358..44592365, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr1:115873480..115873484,+#_671f4df912aa5319e038348dd8788347 | p@chr1:115873480..115873484, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr5:124468141..124468176,-#_671f4df912aa5319e038348dd8788347 | p@chr5:124468141..124468176, - |
| 7.14e-26 | FFCP PHASE2:Hg19::chr12:56848437..56848442,-#_671f4df912aa5319e038348dd8788347 | p1@MIP |
| 7.14e-26 | FFCP PHASE2:Hg19::chr21:36253916..36253918,-#_671f4df912aa5319e038348dd8788347 | p@chr21:36253916..36253918, - |
| 7.14e-26 | FFCP PHASE2:Hg19::chr8:94870047..94870056,+#_671f4df912aa5319e038348dd8788347 | p30@PDP1 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr13:44875179..44875188,-#_671f4df912aa5319e038348dd8788347 | p@chr13:44875179..44875188, - |
| 7.14e-26 | FFCP PHASE2:Hg19::chr11:65361417..65361421,-#_671f4df912aa5319e038348dd8788347 | p2@KCNK7 |
| 7.14e-26 | FFCP PHASE1:Hg19::chr21:44592788..44592807,+#_671f4df912aa5319e038348dd8788347 | p@chr21:44592788..44592807, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr1:86064794..86064797,+#_671f4df912aa5319e038348dd8788347 | p1@ENST00000426794 |
