CL:0000864: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{CL
|id=CL:0000864
|name=tissue-resident macrophage
|namespace=cell
|def="A macrophage constitutively resident in a particular tissue under non-inflammatory conditions, a...") |
No edit summary |
||
| Line 2: | Line 2: | ||
|id=CL:0000864 | |id=CL:0000864 | ||
|name=tissue-resident macrophage | |name=tissue-resident macrophage | ||
|namespace= | |namespace=efo | ||
|def="A macrophage constitutively resident in a particular tissue under non-inflammatory conditions, and capable of phagocytosing a variety of extracellular particulate material, including immune complexes, microorganisms, and dead cells." [GO_REF:0000031, GOC:ana, PMID:19770654] | |def="A macrophage constitutively resident in a particular tissue under non-inflammatory conditions, and capable of phagocytosing a variety of extracellular particulate material, including immune complexes, microorganisms, and dead cells." [GO_REF:0000031, GOC:ana, PMID:19770654] | ||
|xref=FMA:84642;;FMA:84644 | |xref=FMA:84642;;FMA:84644 | ||
| Line 20: | Line 20: | ||
|located_in= | |located_in= | ||
|part_of=UBERON:0000479 | |part_of=UBERON:0000479 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.obo.owl | |||
|is_obsolete= | |||
|preceded_by= | |||
}} | }} | ||
Revision as of 17:39, 15 June 2012
| Name: | tissue-resident macrophage | ||
|---|---|---|---|
| Namespace: | efo | ||
| Definition: | "A macrophage constitutively resident in a particular tissue under non-inflammatory conditions, and capable of phagocytosing a variety of extracellular particulate material, including immune complexes, microorganisms, and dead cells." [GO_REF:0000031, GOC:ana, PMID:19770654] | ||
| Xrefs: |
| ||
| Synonyms: |
"fixed macrophage" EXACT [] "resting histiocyte" EXACT [] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000235(macrophage) |
|---|---|
| part_of: | UBERON:0000479(tissue) |
Children
| is a: | CL:0000878 (central nervous system macrophage),CL:0002476 (bone marrow macrophage) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11501-119F7
- 11641-122D3 (Mouse Microglia, donor3)
- 11662-122F6
- 11718-123C8 (Mouse Microglia, donor1)
- 11736-123E8 (Mouse Microglia, donor2)
- 2171-50H8 (macrophage, bone marrow derived)
- 3560-170A1 (macrophage, bone marrow derived)
- 3632-171A1 (macrophage, bone marrow derived)
- 3704-172A1 (macrophage, bone marrow derived)
- 3967-173D4 (macrophage, TB infection, non-stimulated BMDM, without Mtb)
Mouse (Mus musculus)
- 11501-119F7
- 11641-122D3 (Mouse Microglia, donor3)
- 11662-122F6
- 11718-123C8 (Mouse Microglia, donor1)
- 11736-123E8 (Mouse Microglia, donor2)
- 2171-50H8 (macrophage, bone marrow derived)
- 3560-170A1 (macrophage, bone marrow derived)
- 3632-171A1 (macrophage, bone marrow derived)
- 3704-172A1 (macrophage, bone marrow derived)
- 3967-173D4 (macrophage, TB infection, non-stimulated BMDM, without Mtb)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000864 (tissue-resident macrophage), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 4.54e-44 | FFCP PHASE1:Mm9::chr8:113227136..113227143,+#_516c32b446bc26efc4de3890a61761ce | p@chr8:113227136..113227143, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr13:13485859..13485864,-#_516c32b446bc26efc4de3890a61761ce | p4@Gpr137b |
| 4.54e-44 | FFCP PHASE1:Mm9::chr7:135282667..135282669,+#_516c32b446bc26efc4de3890a61761ce | p@chr7:135282667..135282669, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr4:136685291..136685295,+#_516c32b446bc26efc4de3890a61761ce | p@chr4:136685291..136685295, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr7:31145621..31145622,+#_516c32b446bc26efc4de3890a61761ce | p@chr7:31145621..31145622, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr12:112646729..112646768,+#_516c32b446bc26efc4de3890a61761ce | p@chr12:112646729..112646768, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chrX:9046562..9046572,-#_516c32b446bc26efc4de3890a61761ce | p4@Cybb |
| 4.54e-44 | FFCP PHASE2:Mm9::chr7:135282667..135282669,+#_516c32b446bc26efc4de3890a61761ce | p@chr7:135282667..135282669, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr4:136685291..136685295,+#_516c32b446bc26efc4de3890a61761ce | p@chr4:136685291..136685295, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr8:113227136..113227143,+#_516c32b446bc26efc4de3890a61761ce | p@chr8:113227136..113227143, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr13:13485859..13485864,-#_516c32b446bc26efc4de3890a61761ce | p4@Gpr137b |
| 4.54e-44 | FFCP PHASE1:Mm9::chr11:4733080..4733087,-#_516c32b446bc26efc4de3890a61761ce | p13@Nf2 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr13:103497023..103497030,+#_516c32b446bc26efc4de3890a61761ce | p@chr13:103497023..103497030, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr11:4733080..4733087,-#_516c32b446bc26efc4de3890a61761ce | p13@Nf2 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr6:48989609..48989612,+#_516c32b446bc26efc4de3890a61761ce | p@chr6:48989609..48989612, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chrX:9046562..9046572,-#_516c32b446bc26efc4de3890a61761ce | p4@Cybb |
| 4.54e-44 | FFCP PHASE1:Mm9::chr13:103497023..103497030,+#_516c32b446bc26efc4de3890a61761ce | p@chr13:103497023..103497030, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr6:48989609..48989612,+#_516c32b446bc26efc4de3890a61761ce | p@chr6:48989609..48989612, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr7:31145621..31145622,+#_516c32b446bc26efc4de3890a61761ce | p@chr7:31145621..31145622, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr12:112646729..112646768,+#_516c32b446bc26efc4de3890a61761ce | p@chr12:112646729..112646768, + |
| 6.75e-44 | FFCP PHASE1:Mm9::chr1:173164773..173164781,-#_e8b5b151a9dc19c8317f3c7903943577 | p3@Fcer1g |
| 6.75e-44 | FFCP PHASE2:Mm9::chr1:173164773..173164781,-#_e8b5b151a9dc19c8317f3c7903943577 | p3@Fcer1g |
| 1.12e-43 | FFCP PHASE1:Mm9::chr11:69478859..69478867,-#_0b084ba5b457cac5eedceaaaa57fafa5 | p@chr11:69478859..69478867, - |
| 1.12e-43 | FFCP PHASE2:Mm9::chr11:69478859..69478867,-#_0b084ba5b457cac5eedceaaaa57fafa5 | p@chr11:69478859..69478867, - |
| 1.85e-43 | FFCP PHASE2:Mm9::chr6:48997958..48997979,-#_5cefccc1a45f489754e6fa429f110341 | p@chr6:48997958..48997979, - |
| 1.85e-43 | FFCP PHASE1:Mm9::chr6:48997958..48997979,-#_5cefccc1a45f489754e6fa429f110341 | p@chr6:48997958..48997979, - |
| 1.93e-39 | FFCP PHASE2:Mm9::chr11:69479338..69479345,-#_50348d5027c3535b97d29c7a62d0b892 | p@chr11:69479338..69479345, - |
| 1.93e-39 | FFCP PHASE1:Mm9::chr11:69479338..69479345,-#_50348d5027c3535b97d29c7a62d0b892 | p@chr11:69479338..69479345, - |
| 5.95e-39 | FFCP PHASE2:Mm9::chr11:69479077..69479088,-#_e90322bcbf02696eb58df851b225795f | p@chr11:69479077..69479088, - |
| 5.95e-39 | FFCP PHASE2:Mm9::chr6:48997901..48997913,+#_e90322bcbf02696eb58df851b225795f | p@chr6:48997901..48997913, + |
| 5.95e-39 | FFCP PHASE1:Mm9::chr11:69479077..69479088,-#_e90322bcbf02696eb58df851b225795f | p@chr11:69479077..69479088, - |
| 5.95e-39 | FFCP PHASE1:Mm9::chr6:48997901..48997913,+#_e90322bcbf02696eb58df851b225795f | p@chr6:48997901..48997913, + |
| 1.6e-35 | FFCP PHASE2:Mm9::chr14:31973915..31973932,+#_8e9bbd81ca2ac5e301dc7339626b715a | p@chr14:31973915..31973932, + |
| 1.6e-35 | FFCP PHASE1:Mm9::chr14:31973915..31973932,+#_8e9bbd81ca2ac5e301dc7339626b715a | p@chr14:31973915..31973932, + |
| 1.97e-35 | FFCP PHASE2:Mm9::chr6:48997305..48997322,+#_ef1c66aab8f3db59a8528f0d17a5e6cf | p@chr6:48997305..48997322, + |
| 1.97e-35 | FFCP PHASE1:Mm9::chr6:48997305..48997322,+#_ef1c66aab8f3db59a8528f0d17a5e6cf | p@chr6:48997305..48997322, + |
| 2.41e-35 | FFCP PHASE1:Mm9::chr5:138670967..138670977,+#_502ba895206a5345d5e380ca9a83c793 | p3@BC055004, p3@LOC100504821 |
| 2.41e-35 | FFCP PHASE2:Mm9::chr5:138670967..138670977,+#_502ba895206a5345d5e380ca9a83c793 | p3@BC055004, p3@LOC100504821 |
| 2.95e-35 | FFCP PHASE2:Mm9::chr6:48993990..48994006,+#_33669c1dbe56ef52d77522fede5e0fc5 | p@chr6:48993990..48994006, + |
| 2.95e-35 | FFCP PHASE1:Mm9::chr6:48993990..48994006,+#_33669c1dbe56ef52d77522fede5e0fc5 | p@chr6:48993990..48994006, + |
| 1.23e-33 | FFCP PHASE1:Mm9::chr6:122805870..122805874,-#_cdc842e9e3f257387f5765fa7f1a5a3a | p@chr6:122805870..122805874, - |
| 1.23e-33 | FFCP PHASE2:Mm9::chr6:122805870..122805874,-#_cdc842e9e3f257387f5765fa7f1a5a3a | p@chr6:122805870..122805874, - |
| 2.04e-33 | FFCP PHASE1:Mm9::chr10:116715054..116715061,-#_1299bb4e3e98e76824dd6f4fe069aa21 | p@chr10:116715054..116715061, - |
| 2.04e-33 | FFCP PHASE2:Mm9::chr10:116715054..116715061,-#_1299bb4e3e98e76824dd6f4fe069aa21 | p@chr10:116715054..116715061, - |
| 2.62e-33 | FFCP PHASE2:Mm9::chr8:74103228..74103246,+#_87bf0cbd8afd127b2cae4f88afced72e | p16@Slc27a1 |
| 2.62e-33 | FFCP PHASE2:Mm9::chr11:69479320..69479327,-#_87bf0cbd8afd127b2cae4f88afced72e | p@chr11:69479320..69479327, - |
| 2.62e-33 | FFCP PHASE1:Mm9::chr11:69479320..69479327,-#_87bf0cbd8afd127b2cae4f88afced72e | p@chr11:69479320..69479327, - |
| 2.62e-33 | FFCP PHASE1:Mm9::chr8:74103228..74103246,+#_87bf0cbd8afd127b2cae4f88afced72e | p16@Slc27a1 |
| 7.1e-33 | FFCP PHASE1:Mm9::chr11:102297834..102297848,+#_c66dd78f250a7727c0326afaa9bcf9f5 | p@chr11:102297834..102297848, + |
| 7.1e-33 | FFCP PHASE2:Mm9::chr11:102297834..102297848,+#_c66dd78f250a7727c0326afaa9bcf9f5 | p@chr11:102297834..102297848, + |
| 9.22e-33 | FFCP PHASE1:Mm9::chr4:136452258..136452269,-#_30dc16176864b81253c5a4b1209bd0bb | p@chr4:136452258..136452269, - |
| 9.22e-33 | FFCP PHASE1:Mm9::chr6:48997291..48997298,+#_30dc16176864b81253c5a4b1209bd0bb | p@chr6:48997291..48997298, + |
| 9.22e-33 | FFCP PHASE2:Mm9::chr6:48995364..48995370,+#_30dc16176864b81253c5a4b1209bd0bb | p@chr6:48995364..48995370, + |
| 9.22e-33 | FFCP PHASE1:Mm9::chr6:48995364..48995370,+#_30dc16176864b81253c5a4b1209bd0bb | p@chr6:48995364..48995370, + |
| 9.22e-33 | FFCP PHASE2:Mm9::chr4:136452258..136452269,-#_30dc16176864b81253c5a4b1209bd0bb | p@chr4:136452258..136452269, - |
| 9.22e-33 | FFCP PHASE2:Mm9::chr6:48997291..48997298,+#_30dc16176864b81253c5a4b1209bd0bb | p@chr6:48997291..48997298, + |
| 2.16e-32 | FFCP PHASE2:Mm9::chr4:136446198..136446209,-#_d42cd31ca7fe044e7aa884662a713a24 | p@chr4:136446198..136446209, - |
| 2.16e-32 | FFCP PHASE1:Mm9::chr4:136446198..136446209,-#_d42cd31ca7fe044e7aa884662a713a24 | p@chr4:136446198..136446209, - |
| 2.6e-32 | FFCP PHASE2:Mm9::chr6:48995408..48995424,+#_d57268a49ea20a077356ed0d77f37a3f | p@chr6:48995408..48995424, + |
| 2.6e-32 | FFCP PHASE1:Mm9::chr6:48995408..48995424,+#_d57268a49ea20a077356ed0d77f37a3f | p@chr6:48995408..48995424, + |
| 2.6e-32 | FFCP PHASE2:Mm9::chr6:48997398..48997412,+#_d57268a49ea20a077356ed0d77f37a3f | p@chr6:48997398..48997412, + |
| 2.6e-32 | FFCP PHASE1:Mm9::chr6:48997398..48997412,+#_d57268a49ea20a077356ed0d77f37a3f | p@chr6:48997398..48997412, + |
| 3.13e-32 | FFCP PHASE1:Mm9::chr14:31973221..31973260,-#_3a22919d926d0496f4b4c05d4f9dcc27 | p@chr14:31973221..31973260, - |
| 3.13e-32 | FFCP PHASE2:Mm9::chr14:31973221..31973260,-#_3a22919d926d0496f4b4c05d4f9dcc27 | p@chr14:31973221..31973260, - |
| 5.28e-30 | FFCP PHASE1:Mm9::chr10:116714486..116714508,-#_3800462b08dfd9682fdf1e65ef9facb2 | p@chr10:116714486..116714508, - |
| 5.28e-30 | FFCP PHASE2:Mm9::chr10:116714486..116714508,-#_3800462b08dfd9682fdf1e65ef9facb2 | p@chr10:116714486..116714508, - |
| 5.63e-30 | FFCP PHASE1:Mm9::chr10:75403311..75403323,-#_4df89c165265332f918c1b0b4d66ae47 | p3@ENSMUST00000059658, p3@uc007fts.1 |
| 5.63e-30 | FFCP PHASE2:Mm9::chr10:75403311..75403323,-#_4df89c165265332f918c1b0b4d66ae47 | p3@ENSMUST00000059658, p3@uc007fts.1 |
| 5.63e-30 | FFCP PHASE1:Mm9::chr6:122528009..122528020,-#_4df89c165265332f918c1b0b4d66ae47 | p@chr6:122528009..122528020, - |
| 5.63e-30 | FFCP PHASE1:Mm9::chr1:173159807..173159816,-#_4df89c165265332f918c1b0b4d66ae47 | p@chr1:173159807..173159816, - |
| 5.63e-30 | FFCP PHASE1:Mm9::chr17:25273605..25273609,+#_4df89c165265332f918c1b0b4d66ae47 | p6@Clcn7 |
| 5.63e-30 | FFCP PHASE1:Mm9::chr7:128207732..128207737,-#_4df89c165265332f918c1b0b4d66ae47 | p@chr7:128207732..128207737, - |
| 5.63e-30 | FFCP PHASE2:Mm9::chr13:76099911..76099914,+#_4df89c165265332f918c1b0b4d66ae47 | p@chr13:76099911..76099914, + |
| 5.63e-30 | FFCP PHASE1:Mm9::chr19:12539392..12539396,+#_4df89c165265332f918c1b0b4d66ae47 | p@chr19:12539392..12539396, + |
| 5.63e-30 | FFCP PHASE2:Mm9::chr17:25273605..25273609,+#_4df89c165265332f918c1b0b4d66ae47 | p6@Clcn7 |
| 5.63e-30 | FFCP PHASE2:Mm9::chr1:173159807..173159816,-#_4df89c165265332f918c1b0b4d66ae47 | p@chr1:173159807..173159816, - |
| 5.63e-30 | FFCP PHASE2:Mm9::chr3:95358394..95358404,+#_4df89c165265332f918c1b0b4d66ae47 | p@chr3:95358394..95358404, + |
| 5.63e-30 | FFCP PHASE2:Mm9::chr19:12539392..12539396,+#_4df89c165265332f918c1b0b4d66ae47 | p@chr19:12539392..12539396, + |
| 5.63e-30 | FFCP PHASE1:Mm9::chrX:9046606..9046630,-#_4df89c165265332f918c1b0b4d66ae47 | p3@Cybb |
| 5.63e-30 | FFCP PHASE2:Mm9::chr3:151394747..151394780,-#_4df89c165265332f918c1b0b4d66ae47 | p@chr3:151394747..151394780, - |
| 5.63e-30 | FFCP PHASE1:Mm9::chr3:95358394..95358404,+#_4df89c165265332f918c1b0b4d66ae47 | p@chr3:95358394..95358404, + |
| 5.63e-30 | FFCP PHASE2:Mm9::chr6:122528009..122528020,-#_4df89c165265332f918c1b0b4d66ae47 | p@chr6:122528009..122528020, - |
| 5.63e-30 | FFCP PHASE1:Mm9::chr13:76099911..76099914,+#_4df89c165265332f918c1b0b4d66ae47 | p@chr13:76099911..76099914, + |
| 5.63e-30 | FFCP PHASE2:Mm9::chr7:128207732..128207737,-#_4df89c165265332f918c1b0b4d66ae47 | p@chr7:128207732..128207737, - |
| 5.63e-30 | FFCP PHASE1:Mm9::chr3:151394747..151394780,-#_4df89c165265332f918c1b0b4d66ae47 | p@chr3:151394747..151394780, - |
| 5.63e-30 | FFCP PHASE2:Mm9::chrX:9046606..9046630,-#_4df89c165265332f918c1b0b4d66ae47 | p3@Cybb |
| 7.42e-30 | FFCP PHASE2:Mm9::chr6:48997360..48997394,+#_0ed0255a2c7b2f725876be351a059fab | p@chr6:48997360..48997394, + |
| 7.42e-30 | FFCP PHASE1:Mm9::chr6:48997360..48997394,+#_0ed0255a2c7b2f725876be351a059fab | p@chr6:48997360..48997394, + |
| 1.1e-29 | FFCP PHASE1:Mm9::chr16:32400811..32400820,+#_b968842627caedafaed943da79c87bf1 | p4@Tm4sf19 |
| 1.1e-29 | FFCP PHASE2:Mm9::chr10:127033266..127033304,+#_b968842627caedafaed943da79c87bf1 | p1@ENSMUST00000124182 |
| 1.1e-29 | FFCP PHASE1:Mm9::chr10:127033266..127033304,+#_b968842627caedafaed943da79c87bf1 | p1@ENSMUST00000124182 |
| 1.1e-29 | FFCP PHASE2:Mm9::chr16:32400811..32400820,+#_b968842627caedafaed943da79c87bf1 | p4@Tm4sf19 |
| 6.0e-29 | FFCP PHASE1:Mm9::chr11:4733117..4733126,-#_c3fcfbc87fef057276f5c2728689a257 | p11@Nf2 |
| 6.0e-29 | FFCP PHASE2:Mm9::chr11:4733117..4733126,-#_c3fcfbc87fef057276f5c2728689a257 | p11@Nf2 |
| 2.2e-28 | FFCP PHASE1:Mm9::chr6:48992765..48992800,+#_9076c1ab092faae518db55be57a04dce | p@chr6:48992765..48992800, + |
| 2.2e-28 | FFCP PHASE2:Mm9::chr6:48992877..48992890,-#_9076c1ab092faae518db55be57a04dce | p@chr6:48992877..48992890, - |
| 2.2e-28 | FFCP PHASE1:Mm9::chr6:48992877..48992890,-#_9076c1ab092faae518db55be57a04dce | p@chr6:48992877..48992890, - |
| 2.2e-28 | FFCP PHASE2:Mm9::chr6:48992765..48992800,+#_9076c1ab092faae518db55be57a04dce | p@chr6:48992765..48992800, + |
| 8.9e-28 | FFCP PHASE2:Mm9::chr10:116714720..116714745,-#_9f00dde13d5322cef6db20786a87a955 | p@chr10:116714720..116714745, - |
| 8.9e-28 | FFCP PHASE1:Mm9::chr10:116714720..116714745,-#_9f00dde13d5322cef6db20786a87a955 | p@chr10:116714720..116714745, - |
