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Revision as of 17:26, 15 June 2012

Name:neurogenic placode
Definition:"Cranial placode with neurogenic potential[cjm]. Neurogenic placodes are transient ectodermal thickenings that form at the border of the neural plate and epidermis and give rise to sensory neurons of the cranial ganglia[ZFA]. The neurogenic placodes give rise to parts of various nerves and ganglia, the olfactory organ, parietal eye, parts of the inner ear, and the lateral line. There are 2 major series of neurogenic placodes, the dorsolateral and ventrolateral or epibranchial[PMID]" [PMID:11523831, Wikipedia:Neurogenic_placodes, ZFA:0001309]
Xrefs:
links:

TAO:0001309

ZFA:0001309
Synonyms: "neurogenic placodes" EXACT PLURAL [ZFA:0001309]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002546(cranial placode)



Children

is a:UBERON:0003050 (olfactory placode),UBERON:0003067 (dorsolateral placode)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0009955 (neurogenic placode), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE1:Mm9::chr19:55255206..55255223,+#_3a60b0cd6868b4b766bca2e34977f532p1@Tectb
1.87e-86FFCP PHASE1:Mm9::chr13:78257491..78257498,+#_3a60b0cd6868b4b766bca2e34977f532p@chr13:78257491..78257498, +
1.87e-86FFCP PHASE1:Mm9::chr7:109265277..109265288,-#_3a60b0cd6868b4b766bca2e34977f532p4@Chrna10
1.87e-86FFCP PHASE2:Mm9::chr7:88068153..88068160,-#_3a60b0cd6868b4b766bca2e34977f532p10@Sec11a
1.87e-86FFCP PHASE1:Mm9::chr5:3909290..3909299,+#_3a60b0cd6868b4b766bca2e34977f532p@chr5:3909290..3909299, +
1.87e-86FFCP PHASE2:Mm9::chr1:194818647..194818660,-#_3a60b0cd6868b4b766bca2e34977f532p@chr1:194818647..194818660, -
1.87e-86FFCP PHASE2:Mm9::chr5:68423014..68423037,+#_3a60b0cd6868b4b766bca2e34977f532p1@Grxcr1
1.87e-86FFCP PHASE1:Mm9::chr9:42207697..42207705,-#_3a60b0cd6868b4b766bca2e34977f532p@chr9:42207697..42207705, -
1.87e-86FFCP PHASE1:Mm9::chr7:27964761..27964768,+#_3a60b0cd6868b4b766bca2e34977f532p@chr7:27964761..27964768, +
1.87e-86FFCP PHASE2:Mm9::chr9:50968647..50968668,-#_3a60b0cd6868b4b766bca2e34977f532p@chr9:50968647..50968668, -
1.87e-86FFCP PHASE1:Mm9::chr2:9811162..9811171,-#_3a60b0cd6868b4b766bca2e34977f532p2@9230102O04Rik
1.87e-86FFCP PHASE2:Mm9::chr5:3909290..3909299,+#_3a60b0cd6868b4b766bca2e34977f532p@chr5:3909290..3909299, +
1.87e-86FFCP PHASE1:Mm9::chr5:150945209..150945220,+#_3a60b0cd6868b4b766bca2e34977f532p@chr5:150945209..150945220, +
1.87e-86FFCP PHASE1:Mm9::chr1:16651649..16651655,+#_3a60b0cd6868b4b766bca2e34977f532p@chr1:16651649..16651655, +
1.87e-86FFCP PHASE1:Mm9::chr9:41495920..41495928,-#_3a60b0cd6868b4b766bca2e34977f532p@chr9:41495920..41495928, -
1.87e-86FFCP PHASE2:Mm9::chr10:80806047..80806059,-#_3a60b0cd6868b4b766bca2e34977f532p4@Gipc3
1.87e-86FFCP PHASE1:Mm9::chr2:75320183..75320189,+#_3a60b0cd6868b4b766bca2e34977f532p@chr2:75320183..75320189, +
1.87e-86FFCP PHASE1:Mm9::chr1:93218694..93218705,+#_3a60b0cd6868b4b766bca2e34977f532p1@Espnl
1.87e-86FFCP PHASE2:Mm9::chr9:92087926..92087938,+#_3a60b0cd6868b4b766bca2e34977f532p2@Plscr5
1.87e-86FFCP PHASE2:Mm9::chr3:58626291..58626298,-#_3a60b0cd6868b4b766bca2e34977f532p@chr3:58626291..58626298, -
1.87e-86FFCP PHASE1:Mm9::chr9:56208792..56208814,-#_3a60b0cd6868b4b766bca2e34977f532p@chr9:56208792..56208814, -
1.87e-86FFCP PHASE1:Mm9::chr15:65641779..65641790,+#_3a60b0cd6868b4b766bca2e34977f532p@chr15:65641779..65641790, +
1.87e-86FFCP PHASE2:Mm9::chr1:172843813..172843834,-#_3a60b0cd6868b4b766bca2e34977f532p@chr1:172843813..172843834, -
1.87e-86FFCP PHASE2:Mm9::chr4:130461150..130461185,+#_3a60b0cd6868b4b766bca2e34977f532p@chr4:130461150..130461185, +
1.87e-86FFCP PHASE1:Mm9::chr6:113251614..113251623,+#_3a60b0cd6868b4b766bca2e34977f532p@chr6:113251614..113251623, +
1.87e-86FFCP PHASE1:Mm9::chr1:60561636..60561645,-#_3a60b0cd6868b4b766bca2e34977f532p@chr1:60561636..60561645, -
1.87e-86FFCP PHASE2:Mm9::chr3:100724698..100724706,+#_3a60b0cd6868b4b766bca2e34977f532p@chr3:100724698..100724706, +
1.87e-86FFCP PHASE2:Mm9::chr6:30619378..30619412,-#_3a60b0cd6868b4b766bca2e34977f532p11@Tsga14
1.87e-86FFCP PHASE2:Mm9::chr19:10536797..10536802,-#_3a60b0cd6868b4b766bca2e34977f532p@chr19:10536797..10536802, -
1.87e-86FFCP PHASE2:Mm9::chr9:56208792..56208814,-#_3a60b0cd6868b4b766bca2e34977f532p@chr9:56208792..56208814, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207887..42207960,-#_3a60b0cd6868b4b766bca2e34977f532p1@Tecta
1.87e-86FFCP PHASE2:Mm9::chr3:106986057..106986062,+#_3a60b0cd6868b4b766bca2e34977f532p1@Kcna10
1.87e-86FFCP PHASE1:Mm9::chr11:114603036..114603048,+#_3a60b0cd6868b4b766bca2e34977f532p@chr11:114603036..114603048, +
1.87e-86FFCP PHASE2:Mm9::chr11:102123535..102123544,+#_3a60b0cd6868b4b766bca2e34977f532p5@BC030867
1.87e-86FFCP PHASE1:Mm9::chr3:69811590..69811601,+#_3a60b0cd6868b4b766bca2e34977f532p1@Otol1
1.87e-86FFCP PHASE2:Mm9::chr3:35012425..35012439,+#_3a60b0cd6868b4b766bca2e34977f532p@chr3:35012425..35012439, +
1.87e-86FFCP PHASE2:Mm9::chr4:115556989..115556997,+#_3a60b0cd6868b4b766bca2e34977f532p1@Kncn
1.87e-86FFCP PHASE2:Mm9::chr17:13983160..13983167,+#_3a60b0cd6868b4b766bca2e34977f532p@chr17:13983160..13983167, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207887..42207960,-#_3a60b0cd6868b4b766bca2e34977f532p1@Tecta
1.87e-86FFCP PHASE1:Mm9::chr17:13983198..13983203,+#_3a60b0cd6868b4b766bca2e34977f532p@chr17:13983198..13983203, +
1.87e-86FFCP PHASE2:Mm9::chr9:42206745..42206774,-#_3a60b0cd6868b4b766bca2e34977f532p@chr9:42206745..42206774, -
1.87e-86FFCP PHASE2:Mm9::chr19:55255206..55255223,+#_3a60b0cd6868b4b766bca2e34977f532p1@Tectb
1.87e-86FFCP PHASE1:Mm9::chr15:12848147..12848162,+#_3a60b0cd6868b4b766bca2e34977f532p@chr15:12848147..12848162, +
1.87e-86FFCP PHASE1:Mm9::chr9:66860888..66860899,+#_3a60b0cd6868b4b766bca2e34977f532p@chr9:66860888..66860899, +
1.87e-86FFCP PHASE1:Mm9::chr2:121206677..121206683,-#_3a60b0cd6868b4b766bca2e34977f532p3@Strc
1.87e-86FFCP PHASE2:Mm9::chr13:78257491..78257498,+#_3a60b0cd6868b4b766bca2e34977f532p@chr13:78257491..78257498, +
1.87e-86FFCP PHASE1:Mm9::chr7:109052297..109052300,-#_3a60b0cd6868b4b766bca2e34977f532p2@Tomt
1.87e-86FFCP PHASE2:Mm9::chr2:128881546..128881553,-#_3a60b0cd6868b4b766bca2e34977f532p@chr2:128881546..128881553, -
1.87e-86FFCP PHASE1:Mm9::chr5:30710403..30710406,-#_3a60b0cd6868b4b766bca2e34977f532p10@Otof
1.87e-86FFCP PHASE1:Mm9::chr1:172843847..172843880,-#_3a60b0cd6868b4b766bca2e34977f532p@chr1:172843847..172843880, -
1.87e-86FFCP PHASE1:Mm9::chr11:4689837..4689845,-#_3a60b0cd6868b4b766bca2e34977f532p@chr11:4689837..4689845, -
1.87e-86FFCP PHASE2:Mm9::chr4:151505798..151505818,-#_3a60b0cd6868b4b766bca2e34977f532p21@Espn
1.87e-86FFCP PHASE1:Mm9::chr9:42206745..42206774,-#_3a60b0cd6868b4b766bca2e34977f532p@chr9:42206745..42206774, -
1.87e-86FFCP PHASE1:Mm9::chr16:96494788..96494801,+#_3a60b0cd6868b4b766bca2e34977f532p12@B3galt5
1.87e-86FFCP PHASE2:Mm9::chr1:93218694..93218705,+#_3a60b0cd6868b4b766bca2e34977f532p1@Espnl
1.87e-86FFCP PHASE1:Mm9::chr1:94627290..94627299,-#_3a60b0cd6868b4b766bca2e34977f532p@chr1:94627290..94627299, -
1.87e-86FFCP PHASE2:Mm9::chr18:42158627..42158630,-#_3a60b0cd6868b4b766bca2e34977f532p@chr18:42158627..42158630, -
1.87e-86FFCP PHASE2:Mm9::chr3:154693281..154693317,-#_3a60b0cd6868b4b766bca2e34977f532p@chr3:154693281..154693317, -
1.87e-86FFCP PHASE2:Mm9::chr9:42208142..42208157,-#_3a60b0cd6868b4b766bca2e34977f532p10@Tecta
1.87e-86FFCP PHASE1:Mm9::chr3:154459246..154459253,+#_3a60b0cd6868b4b766bca2e34977f532p@chr3:154459246..154459253, +
1.87e-86FFCP PHASE1:Mm9::chrX:154140800..154140810,+#_3a60b0cd6868b4b766bca2e34977f532p@chrX:154140800..154140810, +
1.87e-86FFCP PHASE2:Mm9::chr2:152453066..152453075,-#_3a60b0cd6868b4b766bca2e34977f532p@chr2:152453066..152453075, -
1.87e-86FFCP PHASE2:Mm9::chr12:13508046..13508055,+#_3a60b0cd6868b4b766bca2e34977f532p@chr12:13508046..13508055, +
1.87e-86FFCP PHASE2:Mm9::chr5:150945209..150945220,+#_3a60b0cd6868b4b766bca2e34977f532p@chr5:150945209..150945220, +
1.87e-86FFCP PHASE1:Mm9::chr1:78523144..78523177,+#_3a60b0cd6868b4b766bca2e34977f532p@chr1:78523144..78523177, +
1.87e-86FFCP PHASE1:Mm9::chr12:13572961..13572974,+#_3a60b0cd6868b4b766bca2e34977f532p@chr12:13572961..13572974, +
1.87e-86FFCP PHASE1:Mm9::chr15:58022966..58022995,-#_3a60b0cd6868b4b766bca2e34977f532p@chr15:58022966..58022995, -
1.87e-86FFCP PHASE1:Mm9::chr7:133957514..133957529,+#_3a60b0cd6868b4b766bca2e34977f532p@chr7:133957514..133957529, +
1.87e-86FFCP PHASE1:Mm9::chr18:42158627..42158630,-#_3a60b0cd6868b4b766bca2e34977f532p@chr18:42158627..42158630, -
1.87e-86FFCP PHASE1:Mm9::chr10:107349378..107349390,-#_3a60b0cd6868b4b766bca2e34977f532p1@Otogl
1.87e-86FFCP PHASE2:Mm9::chr4:63079735..63079745,-#_3a60b0cd6868b4b766bca2e34977f532p@chr4:63079735..63079745, -
1.87e-86FFCP PHASE2:Mm9::chr5:147854240..147854249,-#_3a60b0cd6868b4b766bca2e34977f532p@chr5:147854240..147854249, -
1.87e-86FFCP PHASE2:Mm9::chr10:107349430..107349440,-#_3a60b0cd6868b4b766bca2e34977f532p3@Otogl
1.87e-86FFCP PHASE1:Mm9::chr2:53464168..53464175,+#_3a60b0cd6868b4b766bca2e34977f532p@chr2:53464168..53464175, +
1.87e-86FFCP PHASE1:Mm9::chr11:94371127..94371139,-#_3a60b0cd6868b4b766bca2e34977f532p@chr11:94371127..94371139, -
1.87e-86FFCP PHASE2:Mm9::chr17:31335903..31335921,-#_3a60b0cd6868b4b766bca2e34977f532p2@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr14:47293496..47293510,-#_3a60b0cd6868b4b766bca2e34977f532p@chr14:47293496..47293510, -
1.87e-86FFCP PHASE1:Mm9::chr9:42208142..42208157,-#_3a60b0cd6868b4b766bca2e34977f532p10@Tecta
1.87e-86FFCP PHASE2:Mm9::chr6:86746562..86746579,-#_3a60b0cd6868b4b766bca2e34977f532p@chr6:86746562..86746579, -
1.87e-86FFCP PHASE2:Mm9::chr15:58480061..58480066,+#_3a60b0cd6868b4b766bca2e34977f532p5@Fer1l6
1.87e-86FFCP PHASE2:Mm9::chr9:42207777..42207789,-#_3a60b0cd6868b4b766bca2e34977f532p7@Tecta
1.87e-86FFCP PHASE1:Mm9::chr19:55255289..55255299,+#_3a60b0cd6868b4b766bca2e34977f532p2@Tectb
1.87e-86FFCP PHASE1:Mm9::chr13:78257518..78257522,+#_3a60b0cd6868b4b766bca2e34977f532p@chr13:78257518..78257522, +
1.87e-86FFCP PHASE1:Mm9::chr11:102123535..102123544,+#_3a60b0cd6868b4b766bca2e34977f532p5@BC030867
1.87e-86FFCP PHASE2:Mm9::chr11:114603036..114603048,+#_3a60b0cd6868b4b766bca2e34977f532p@chr11:114603036..114603048, +
1.87e-86FFCP PHASE2:Mm9::chr16:93971325..93971337,-#_3a60b0cd6868b4b766bca2e34977f532p@chr16:93971325..93971337, -
1.87e-86FFCP PHASE1:Mm9::chr15:97806034..97806061,+#_3a60b0cd6868b4b766bca2e34977f532p@chr15:97806034..97806061, +
1.87e-86FFCP PHASE2:Mm9::chr1:154246932..154246939,+#_3a60b0cd6868b4b766bca2e34977f532p7@Glt25d2
1.87e-86FFCP PHASE1:Mm9::chr5:3909310..3909321,+#_3a60b0cd6868b4b766bca2e34977f532p@chr5:3909310..3909321, +
1.87e-86FFCP PHASE1:Mm9::chr14:31283072..31283081,-#_3a60b0cd6868b4b766bca2e34977f532p@chr14:31283072..31283081, -
1.87e-86FFCP PHASE2:Mm9::chr8:13414266..13414279,+#_3a60b0cd6868b4b766bca2e34977f532p@chr8:13414266..13414279, +
1.87e-86FFCP PHASE2:Mm9::chr2:53464168..53464175,+#_3a60b0cd6868b4b766bca2e34977f532p@chr2:53464168..53464175, +
1.87e-86FFCP PHASE2:Mm9::chr5:72652660..72652667,+#_3a60b0cd6868b4b766bca2e34977f532p@chr5:72652660..72652667, +
1.87e-86FFCP PHASE2:Mm9::chr11:89702580..89702593,-#_3a60b0cd6868b4b766bca2e34977f532p@chr11:89702580..89702593, -
1.87e-86FFCP PHASE1:Mm9::chr9:42207777..42207789,-#_3a60b0cd6868b4b766bca2e34977f532p7@Tecta
1.87e-86FFCP PHASE1:Mm9::chr4:130461150..130461185,+#_3a60b0cd6868b4b766bca2e34977f532p@chr4:130461150..130461185, +
1.87e-86FFCP PHASE1:Mm9::chr17:13983095..13983100,+#_3a60b0cd6868b4b766bca2e34977f532p@chr17:13983095..13983100, +
1.87e-86FFCP PHASE2:Mm9::chr2:136942131..136942142,-#_3a60b0cd6868b4b766bca2e34977f532p6@Jag1
1.87e-86FFCP PHASE2:Mm9::chr1:78523144..78523177,+#_3a60b0cd6868b4b766bca2e34977f532p@chr1:78523144..78523177, +
1.87e-86FFCP PHASE2:Mm9::chr7:53496326..53496340,+#_3a60b0cd6868b4b766bca2e34977f532p1@Otog

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