UBERON:0003606: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0003606
|name=limb long bone
|namespace=
|def="A long bone that is part of a limb [Obol]." [OBOL:automatic]
|xref=MA:0000298
|is_a=UBERON:0002428;;UB...") |
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|part_of=UBERON:0002101 | |part_of=UBERON:0002101 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
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|preceded_by= | |||
}} | }} | ||
Revision as of 17:18, 15 June 2012
| Name: | limb long bone | ||
|---|---|---|---|
| Definition: | "A long bone that is part of a limb [Obol]." [OBOL:automatic] | ||
| Xrefs: |
| ||
| Synonyms: | "long bone of limb" EXACT [OBOL:automatic] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002428(limb bone),UBERON:0002495(long bone) |
|---|---|
| part_of: | UBERON:0002101(limb) |
Children
| is a: | UBERON:0003608 (hindlimb long bone) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Mouse (Mus musculus)
- 1350-25C3 (bone (os femoris), neonate N20)
- 1525-43A6 (bone (os femoris), neonate N16)
- 1985-43F5 (bone (os femoris), neonate N02)
- 56-12G2 (bone (os femoris), adult)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003606 (limb long bone), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.4e-49 | FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_95fba1a372a1184209fc33d7e0a910a0 | p26@Myo18a |
| 3.4e-49 | FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_95fba1a372a1184209fc33d7e0a910a0 | p26@Myo18a |
| 4.96e-49 | FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_65c1526a2db860d2cb45d68b76eb6584 | p@chr8:75097542..75097549, + |
| 4.96e-49 | FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_65c1526a2db860d2cb45d68b76eb6584 | p@chr2:32482372..32482381, + |
| 4.96e-49 | FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_65c1526a2db860d2cb45d68b76eb6584 | p@chr8:75097542..75097549, + |
| 4.96e-49 | FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_65c1526a2db860d2cb45d68b76eb6584 | p@chr2:32482372..32482381, + |
| 4.96e-49 | FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_65c1526a2db860d2cb45d68b76eb6584 | p@chr9:21934585..21934591, - |
| 4.96e-49 | FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_65c1526a2db860d2cb45d68b76eb6584 | p@chr9:21934585..21934591, - |
| 3.15e-44 | FFCP PHASE1:Mm9::chr6:51525810..51525817,+#_816edfa3c1fd740984ed4c7abb8d42e3 | p@chr6:51525810..51525817, + |
| 3.15e-44 | FFCP PHASE2:Mm9::chr6:51525810..51525817,+#_816edfa3c1fd740984ed4c7abb8d42e3 | p@chr6:51525810..51525817, + |
| 9.78e-40 | FFCP PHASE1:Mm9::chr19:4876870..4876880,-#_579ff7cb093cb2d97c321cd7c0de0e42 | p@chr19:4876870..4876880, - |
| 9.78e-40 | FFCP PHASE2:Mm9::chr19:4876870..4876880,-#_579ff7cb093cb2d97c321cd7c0de0e42 | p@chr19:4876870..4876880, - |
| 1.15e-39 | FFCP PHASE2:Mm9::chr16:24096441..24096449,+#_1d5c3fe6b6949f389fa4e46356a842fb | p@chr16:24096441..24096449, + |
| 1.15e-39 | FFCP PHASE1:Mm9::chr16:24096441..24096449,+#_1d5c3fe6b6949f389fa4e46356a842fb | p@chr16:24096441..24096449, + |
| 1.15e-39 | FFCP PHASE1:Mm9::chr6:4490674..4490679,+#_1d5c3fe6b6949f389fa4e46356a842fb | p@chr6:4490674..4490679, + |
| 1.15e-39 | FFCP PHASE2:Mm9::chr1:174140324..174140335,-#_1d5c3fe6b6949f389fa4e46356a842fb | p@chr1:174140324..174140335, - |
| 1.15e-39 | FFCP PHASE2:Mm9::chr11:67063327..67063335,+#_1d5c3fe6b6949f389fa4e46356a842fb | p@chr11:67063327..67063335, + |
| 1.15e-39 | FFCP PHASE1:Mm9::chr11:67063327..67063335,+#_1d5c3fe6b6949f389fa4e46356a842fb | p@chr11:67063327..67063335, + |
| 1.15e-39 | FFCP PHASE2:Mm9::chr6:4490674..4490679,+#_1d5c3fe6b6949f389fa4e46356a842fb | p@chr6:4490674..4490679, + |
| 1.15e-39 | FFCP PHASE1:Mm9::chr1:174140324..174140335,-#_1d5c3fe6b6949f389fa4e46356a842fb | p@chr1:174140324..174140335, - |
| 1.55e-39 | FFCP PHASE2:Mm9::chr1:174143249..174143260,-#_ca94281070596caa3691b31fdced0664 | p@chr1:174143249..174143260, - |
| 1.55e-39 | FFCP PHASE1:Mm9::chr1:174143249..174143260,-#_ca94281070596caa3691b31fdced0664 | p@chr1:174143249..174143260, - |
| 3.03e-39 | FFCP PHASE1:Mm9::chr6:51525869..51525891,+#_53e7d38678b7013c145fb5baff5e83f6 | p@chr6:51525869..51525891, + |
| 3.03e-39 | FFCP PHASE2:Mm9::chr6:51525869..51525891,+#_53e7d38678b7013c145fb5baff5e83f6 | p@chr6:51525869..51525891, + |
| 9.31e-39 | FFCP PHASE2:Mm9::chr11:102130083..102130092,+#_800bbdb8d8c8766235941231765d9cd2 | p3@Asb16 |
| 9.31e-39 | FFCP PHASE1:Mm9::chr11:102130083..102130092,+#_800bbdb8d8c8766235941231765d9cd2 | p3@Asb16 |
| 2.41e-35 | FFCP PHASE1:Mm9::chr7:133604286..133604297,-#_bef6f579c17929aeb3919e5e032c1687 | p@chr7:133604286..133604297, - |
| 2.41e-35 | FFCP PHASE2:Mm9::chr7:133604286..133604297,-#_bef6f579c17929aeb3919e5e032c1687 | p@chr7:133604286..133604297, - |
| 2.95e-35 | FFCP PHASE2:Mm9::chr4:138365748..138365759,-#_fd08c6f37563c081a9e93047c7cdff90 | p5@Pla2g5 |
| 2.95e-35 | FFCP PHASE1:Mm9::chr4:138365748..138365759,-#_fd08c6f37563c081a9e93047c7cdff90 | p5@Pla2g5 |
| 9.53e-34 | FFCP PHASE2:Mm9::chr8:74049600..74049612,-#_1382748c41d5ef1c834752f05dcf23ac | p2@uc009mdq.1 |
| 9.53e-34 | FFCP PHASE1:Mm9::chr8:74049600..74049612,-#_1382748c41d5ef1c834752f05dcf23ac | p2@uc009mdq.1 |
| 1.23e-33 | FFCP PHASE2:Mm9::chr2:164773241..164773248,+#_50d3d59334cc071dc4dde3d0d0897a27 | p3@Mmp9 |
| 1.23e-33 | FFCP PHASE1:Mm9::chr2:164773241..164773248,+#_50d3d59334cc071dc4dde3d0d0897a27 | p3@Mmp9 |
| 1.58e-33 | FFCP PHASE1:Mm9::chr1:166815111..166815121,-#_30ad0d0d9afec0a6027350bb7875830e | p@chr1:166815111..166815121, - |
| 1.58e-33 | FFCP PHASE2:Mm9::chr7:3567707..3567718,-#_30ad0d0d9afec0a6027350bb7875830e | p2@Oscar |
| 1.58e-33 | FFCP PHASE2:Mm9::chr1:166815111..166815121,-#_30ad0d0d9afec0a6027350bb7875830e | p@chr1:166815111..166815121, - |
| 1.58e-33 | FFCP PHASE1:Mm9::chr7:3567707..3567718,-#_30ad0d0d9afec0a6027350bb7875830e | p2@Oscar |
| 2.04e-33 | FFCP PHASE2:Mm9::chr9:70799951..70799962,-#_5545042acfeb6ba7ae39827e58a5bbf8 | p4@Lipc |
| 2.04e-33 | FFCP PHASE1:Mm9::chr9:70799951..70799962,-#_5545042acfeb6ba7ae39827e58a5bbf8 | p4@Lipc |
| 2.04e-33 | FFCP PHASE2:Mm9::chr11:75409652..75409664,+#_5545042acfeb6ba7ae39827e58a5bbf8 | p@chr11:75409652..75409664, + |
| 2.04e-33 | FFCP PHASE1:Mm9::chr11:75409652..75409664,+#_5545042acfeb6ba7ae39827e58a5bbf8 | p@chr11:75409652..75409664, + |
| 3.38e-33 | FFCP PHASE2:Mm9::chr15:102196702..102196713,-#_eabb4430912ca78b6648d5184cfc7d1e | p6@Sp7 |
| 3.38e-33 | FFCP PHASE1:Mm9::chr15:102196702..102196713,-#_eabb4430912ca78b6648d5184cfc7d1e | p6@Sp7 |
| 7.17e-33 | FFCP PHASE2:Mm9::chr8:126415826..126415839,+#_af8f598e92d30d862a9bf4c2012e8744 | p@chr8:126415826..126415839, + |
| 7.17e-33 | FFCP PHASE1:Mm9::chr8:126415826..126415839,+#_af8f598e92d30d862a9bf4c2012e8744 | p@chr8:126415826..126415839, + |
| 7.17e-33 | FFCP PHASE2:Mm9::chr18:76271498..76271508,+#_af8f598e92d30d862a9bf4c2012e8744 | p@chr18:76271498..76271508, + |
| 7.17e-33 | FFCP PHASE1:Mm9::chr18:76271498..76271508,+#_af8f598e92d30d862a9bf4c2012e8744 | p@chr18:76271498..76271508, + |
| 2.67e-30 | FFCP PHASE2:Mm9::chr2:32482387..32482399,+#_5d971ed9854a736d712c0f90241c024b | p@chr2:32482387..32482399, + |
| 2.67e-30 | FFCP PHASE1:Mm9::chr2:32482387..32482399,+#_5d971ed9854a736d712c0f90241c024b | p@chr2:32482387..32482399, + |
| 1.1e-29 | FFCP PHASE1:Mm9::chr15:58649683..58649688,-#_d5bf0ef3203efe106083cdb462e87201 | p@chr15:58649683..58649688, - |
| 1.1e-29 | FFCP PHASE2:Mm9::chr12:70396969..70396979,+#_d5bf0ef3203efe106083cdb462e87201 | p@chr12:70396969..70396979, + |
| 1.1e-29 | FFCP PHASE2:Mm9::chr15:58649683..58649688,-#_d5bf0ef3203efe106083cdb462e87201 | p@chr15:58649683..58649688, - |
| 1.1e-29 | FFCP PHASE1:Mm9::chr12:70396969..70396979,+#_d5bf0ef3203efe106083cdb462e87201 | p@chr12:70396969..70396979, + |
| 1.46e-29 | FFCP PHASE1:Mm9::chr7:133590998..133591009,-#_f86ba3e87ece002af2ddce004e300753 | p@chr7:133590998..133591009, - |
| 1.46e-29 | FFCP PHASE2:Mm9::chr7:133590998..133591009,-#_f86ba3e87ece002af2ddce004e300753 | p@chr7:133590998..133591009, - |
| 1.73e-29 | FFCP PHASE2:Mm9::chr18:60751417..60751432,-#_74492865896b34fcf139e4a622f7dc70 | p2@Myoz3 |
| 1.73e-29 | FFCP PHASE1:Mm9::chr18:60751417..60751432,-#_74492865896b34fcf139e4a622f7dc70 | p2@Myoz3 |
| 2.42e-29 | FFCP PHASE2:Mm9::chr11:67051354..67051366,+#_c89b92974ab84d4a09662d787116c636 | p2@Myh4 |
| 2.42e-29 | FFCP PHASE1:Mm9::chr11:67051354..67051366,+#_c89b92974ab84d4a09662d787116c636 | p2@Myh4 |
| 7.46e-29 | FFCP PHASE1:Mm9::chr1:57155729..57155740,-#_2745617f81bf5b2f51f34b96c28d6b90 | p@chr1:57155729..57155740, - |
| 7.46e-29 | FFCP PHASE2:Mm9::chr1:57155729..57155740,-#_2745617f81bf5b2f51f34b96c28d6b90 | p@chr1:57155729..57155740, - |
| 9.26e-29 | FFCP PHASE1:Mm9::chr4:43597258..43597265,-#_f03e3a12e59e6fe63943926b321477b2 | p1@Msmp |
| 9.26e-29 | FFCP PHASE1:Mm9::chr11:67056544..67056589,-#_f03e3a12e59e6fe63943926b321477b2 | p@chr11:67056544..67056589, - |
| 9.26e-29 | FFCP PHASE2:Mm9::chr11:67056544..67056589,-#_f03e3a12e59e6fe63943926b321477b2 | p@chr11:67056544..67056589, - |
| 9.26e-29 | FFCP PHASE2:Mm9::chr4:43597258..43597265,-#_f03e3a12e59e6fe63943926b321477b2 | p1@Msmp |
| 1.15e-28 | FFCP PHASE1:Mm9::chr6:90552017..90552024,+#_8bf1fddfc8b778a5836447a911f64aca | p@chr6:90552017..90552024, + |
| 1.15e-28 | FFCP PHASE1:Mm9::chrY:2858251..2858257,+#_8bf1fddfc8b778a5836447a911f64aca | p@chrY:2858251..2858257, + |
| 1.15e-28 | FFCP PHASE2:Mm9::chrY:2858251..2858257,+#_8bf1fddfc8b778a5836447a911f64aca | p@chrY:2858251..2858257, + |
| 1.15e-28 | FFCP PHASE2:Mm9::chr6:90552017..90552024,+#_8bf1fddfc8b778a5836447a911f64aca | p@chr6:90552017..90552024, + |
| 1.43e-28 | FFCP PHASE1:Mm9::chr6:34436258..34436292,+#_1972ffe5c41d8952c4da69b96771382c | p@chr6:34436258..34436292, + |
| 1.43e-28 | FFCP PHASE2:Mm9::chr6:34436258..34436292,+#_1972ffe5c41d8952c4da69b96771382c | p@chr6:34436258..34436292, + |
| 2.2e-28 | FFCP PHASE1:Mm9::chr11:67069796..67069817,-#_804a8ca02c2178d756ca77653833c234 | p@chr11:67069796..67069817, - |
| 2.2e-28 | FFCP PHASE2:Mm9::chr11:67069796..67069817,-#_804a8ca02c2178d756ca77653833c234 | p@chr11:67069796..67069817, - |
| 2.72e-28 | FFCP PHASE1:Mm9::chr8:107702369..107702386,+#_da9bb9ffe795290695ca5484d5d7238a | p@chr8:107702369..107702386, + |
| 2.72e-28 | FFCP PHASE2:Mm9::chr8:107702369..107702386,+#_da9bb9ffe795290695ca5484d5d7238a | p@chr8:107702369..107702386, + |
| 3.45e-28 | FFCP PHASE2:Mm9::chr18:78254135..78254146,-#_a801b079e6fc84a09597fd8b4cddbbda | p1@Siglec15 |
| 3.45e-28 | FFCP PHASE1:Mm9::chr18:78254135..78254146,-#_a801b079e6fc84a09597fd8b4cddbbda | p1@Siglec15 |
| 6.5e-28 | FFCP PHASE2:Mm9::chr7:133591490..133591500,-#_e77f30747044118e1a60321b4a28f091 | p6@Atp2a1 |
| 6.5e-28 | FFCP PHASE1:Mm9::chr7:133591490..133591500,-#_e77f30747044118e1a60321b4a28f091 | p6@Atp2a1 |
| 8.9e-28 | FFCP PHASE2:Mm9::chr7:133591156..133591165,-#_5ce83267820838f5a8f57515bb5f9112 | p7@Atp2a1 |
| 8.9e-28 | FFCP PHASE1:Mm9::chr7:133591156..133591165,-#_5ce83267820838f5a8f57515bb5f9112 | p7@Atp2a1 |
| 1.42e-27 | FFCP PHASE2:Mm9::chr7:133592162..133592188,-#_3ad3c71efe2d84fadee9adf459b73c42 | p@chr7:133592162..133592188, - |
| 1.42e-27 | FFCP PHASE1:Mm9::chr7:133592162..133592188,-#_3ad3c71efe2d84fadee9adf459b73c42 | p@chr7:133592162..133592188, - |
| 1.42e-27 | FFCP PHASE2:Mm9::chr7:133600635..133600663,+#_3ad3c71efe2d84fadee9adf459b73c42 | p@chr7:133600635..133600663, + |
| 1.42e-27 | FFCP PHASE1:Mm9::chr7:133600635..133600663,+#_3ad3c71efe2d84fadee9adf459b73c42 | p@chr7:133600635..133600663, + |
| 6.75e-27 | FFCP PHASE1:Mm9::chr11:94837662..94837673,-#_da2075ae33989983a2d4b3ceb8695d63 | p4@Sgca |
| 6.75e-27 | FFCP PHASE2:Mm9::chr11:94837662..94837673,-#_da2075ae33989983a2d4b3ceb8695d63 | p4@Sgca |
| 1.66e-26 | FFCP PHASE2:Mm9::chr5:104754379..104754387,+#_19b25864f8540aa1498197618aa42e46 | p1@Mepe |
| 1.66e-26 | FFCP PHASE1:Mm9::chr5:104754379..104754387,+#_19b25864f8540aa1498197618aa42e46 | p1@Mepe |
| 3.47e-26 | FFCP PHASE2:Mm9::chr16:32400888..32400899,+#_abf40ebf994af69bc89c87f7c70826c8 | p2@Tm4sf19 |
| 3.47e-26 | FFCP PHASE1:Mm9::chr12:81581216..81581231,+#_abf40ebf994af69bc89c87f7c70826c8 | p@chr12:81581216..81581231, + |
| 3.47e-26 | FFCP PHASE1:Mm9::chr16:32400888..32400899,+#_abf40ebf994af69bc89c87f7c70826c8 | p2@Tm4sf19 |
| 3.47e-26 | FFCP PHASE2:Mm9::chr12:81581216..81581231,+#_abf40ebf994af69bc89c87f7c70826c8 | p@chr12:81581216..81581231, + |
| 1.12e-25 | FFCP PHASE1:Mm9::chr15:97806574..97806585,-#_80ccc92f73e7afc4634207f6f203b371 | p@chr15:97806574..97806585, - |
| 1.12e-25 | FFCP PHASE1:Mm9::chr17:34176173..34176200,+#_80ccc92f73e7afc4634207f6f203b371 | p5@Col11a2 |
| 1.12e-25 | FFCP PHASE2:Mm9::chr17:34176173..34176200,+#_80ccc92f73e7afc4634207f6f203b371 | p5@Col11a2 |
| 1.12e-25 | FFCP PHASE2:Mm9::chr15:97806574..97806585,-#_80ccc92f73e7afc4634207f6f203b371 | p@chr15:97806574..97806585, - |
| 1.36e-25 | FFCP PHASE2:Mm9::chr18:78254174..78254185,-#_cef35f9bed3a69601080eeac4d7ee718 | p2@Siglec15 |
| 1.36e-25 | FFCP PHASE2:Mm9::chr2:180890942..180890956,-#_cef35f9bed3a69601080eeac4d7ee718 | p@chr2:180890942..180890956, - |
