Personal tools

Coexpression cluster:C81: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{Coexpression_clusters |full_id=C81_trachea_salivary_throat_aorta_eye_submaxillary_parotid |id=C81 }}")
 
No edit summary
Line 1: Line 1:
{{Coexpression_clusters
{{Coexpression_clusters
|full_id=C81_trachea_salivary_throat_aorta_eye_submaxillary_parotid
|full_id=C81_trachea_salivary_throat_aorta_eye_submaxillary_parotid
|gostat_on_coexpression_clusters=GO:0004745!retinol dehydrogenase activity!0.0166457643408104!10170;131$GO:0001539!ciliary or flagellar motility!0.0166457643408104!55567;201625$GO:0004022!alcohol dehydrogenase activity!0.0166457643408104!10170;131$GO:0005858!axonemal dynein complex!0.0166457643408104!55567;201625$GO:0044447!axoneme part!0.0166457643408104!55567;201625$GO:0005930!axoneme!0.0249902617576458!55567;201625$GO:0006664!glycolipid metabolic process!0.0454098234236558!84002;10402$GO:0042995!cell projection!0.0485879495834678!55567;150483;201625;196385$GO:0019861!flagellum!0.0485879495834678!150483;196385$GO:0030855!epithelial cell differentiation!0.0490211584529905!10170;3753$GO:0008917!lipopolysaccharide N-acetylglucosaminyltransferase activity!0.0493445582636681!84002$GO:0008457!beta-galactosyl-N-acetylglucosaminylgalactosylglucosyl-ceramide beta-1,3-acetylglucosaminyltransferase activity!0.0493445582636681!84002
|id=C81
|id=C81
}}
}}

Revision as of 17:41, 18 May 2012


Full id: C81_trachea_salivary_throat_aorta_eye_submaxillary_parotid



Phase1 CAGE Peaks

Hg19::chr10:104211214..104211238,-p4@C10orf95
Hg19::chr10:124318314..124318318,+p@chr10:124318314..124318318
+
Hg19::chr10:23721618..23721620,+p@chr10:23721618..23721620
+
Hg19::chr10:28271933..28271944,-p4@ARMC4
Hg19::chr10:28287763..28287778,-p7@ARMC4
Hg19::chr10:51549546..51549557,+p1@MSMB
Hg19::chr10:51562451..51562462,+p@chr10:51562451..51562462
+
Hg19::chr11:119991589..119991609,-p19@TRIM29
Hg19::chr11:72911473..72911485,+p@chr11:72911473..72911485
+
Hg19::chr11:72911497..72911518,+p@chr11:72911497..72911518
+
Hg19::chr11:8954491..8954499,-p1@C11orf16
Hg19::chr12:101603670..101603682,-p3@SLC5A8
Hg19::chr12:10998484..10998508,-p@chr12:10998484..10998508
-
Hg19::chr12:10998526..10998557,-p@chr12:10998526..10998557
-
Hg19::chr12:10999684..10999693,-p@chr12:10999684..10999693
-
Hg19::chr12:10999696..10999721,-p@chr12:10999696..10999721
-
Hg19::chr12:10999733..10999795,+p@chr12:10999733..10999795
+
Hg19::chr12:10999735..10999755,-p@chr12:10999735..10999755
-
Hg19::chr12:10999759..10999778,-p@chr12:10999759..10999778
-
Hg19::chr12:10999781..10999792,-p@chr12:10999781..10999792
-
Hg19::chr12:10999798..10999803,-p@chr12:10999798..10999803
-
Hg19::chr12:10999798..10999848,+p@chr12:10999798..10999848
+
Hg19::chr12:10999805..10999838,-p@chr12:10999805..10999838
-
Hg19::chr12:10999851..10999880,+p@chr12:10999851..10999880
+
Hg19::chr12:10999863..10999888,-p@chr12:10999863..10999888
-
Hg19::chr12:10999888..10999904,+p@chr12:10999888..10999904
+
Hg19::chr12:10999891..10999914,-p@chr12:10999891..10999914
-
Hg19::chr12:10999916..10999927,-p@chr12:10999916..10999927
-
Hg19::chr12:10999942..10999953,-p@chr12:10999942..10999953
-
Hg19::chr12:10999943..10999949,+p@chr12:10999943..10999949
+
Hg19::chr12:10999955..10999979,-p@chr12:10999955..10999979
-
Hg19::chr12:11000968..11000985,+p@chr12:11000968..11000985
+
Hg19::chr12:11000992..11001011,-p@chr12:11000992..11001011
-
Hg19::chr12:11002063..11002081,-p1@PRR4
Hg19::chr12:124246842..124246883,+p1@DNAH10
Hg19::chr12:46844533..46844582,+p@chr12:46844533..46844582
+
Hg19::chr12:55137687..55137694,+p@chr12:55137687..55137694
+
Hg19::chr12:55137725..55137730,+p@chr12:55137725..55137730
+
Hg19::chr12:69747865..69747956,+p@chr12:69747865..69747956
+
Hg19::chr12:69747963..69747974,+p@chr12:69747963..69747974
+
Hg19::chr12:85430024..85430057,-p1@TSPAN19
Hg19::chr12:96649237..96649251,+p15@ELK3
Hg19::chr13:36191669..36191680,+p@chr13:36191669..36191680
+
Hg19::chr13:39564962..39564973,-p1@STOML3
Hg19::chr13:39564993..39565002,-p2@STOML3
Hg19::chr13:41327621..41327654,-p@chr13:41327621..41327654
-
Hg19::chr13:43321584..43321597,-p@chr13:43321584..43321597
-
Hg19::chr13:43355714..43355730,+p2@C13orf30
Hg19::chr13:43355732..43355757,+p1@C13orf30
Hg19::chr13:44495610..44495646,+p@chr13:44495610..44495646
+
Hg19::chr13:50589538..50589543,+p3@KCNRG
Hg19::chr13:50589574..50589585,+p1@KCNRG
Hg19::chr14:29082844..29082855,-p1@ENST00000549742
Hg19::chr14:29082860..29082866,-p2@ENST00000549742
Hg19::chr14:31852825..31852846,-p4@HEATR5A
Hg19::chr14:38028715..38028726,-p2@ENST00000553425
Hg19::chr14:78021251..78021260,-p8@SPTLC2
Hg19::chr14:91818566..91818582,-p@chr14:91818566..91818582
-
Hg19::chr15:74509530..74509547,+p1@ENST00000559243
Hg19::chr15:82555169..82555199,+p2@FAM154B
Hg19::chr16:1730358..1730369,+p4@HN1L
Hg19::chr16:19429024..19429065,+p2@TMC5
Hg19::chr16:19429067..19429073,+p18@TMC5
Hg19::chr16:21162129..21162178,-p1@DNAH3
Hg19::chr16:29118735..29118741,-p2@uc002dsh.1
Hg19::chr16:53078117..53078135,-p@chr16:53078117..53078135
-
Hg19::chr16:66729847..66729891,-p@chr16:66729847..66729891
-
Hg19::chr16:776431..776465,-p1@CCDC78
Hg19::chr16:83837409..83837435,-p@chr16:83837409..83837435
-
Hg19::chr16:84792874..84792881,+p@chr16:84792874..84792881
+
Hg19::chr16:85146040..85146092,-p1@FAM92B
Hg19::chr17:29600648..29600662,-p@chr17:29600648..29600662
-
Hg19::chr17:34080230..34080279,-p1@GAS2L2
Hg19::chr17:45909091..45909111,+p2@LRRC46
Hg19::chr17:54188329..54188350,+p@chr17:54188329..54188350
+
Hg19::chr17:59094318..59094328,+p@chr17:59094318..59094328
+
Hg19::chr18:24804022..24804043,+p@chr18:24804022..24804043
+
Hg19::chr18:36308334..36308341,-p@chr18:36308334..36308341
-
Hg19::chr18:61311485..61311497,-p1@SERPINB4
Hg19::chr18:61329123..61329134,-p1@SERPINB3
Hg19::chr19:13417686..13417720,+p@chr19:13417686..13417720
+
Hg19::chr19:42254956..42254970,+p@chr19:42254956..42254970
+
Hg19::chr19:42947017..42947026,-p4@CXCL17
Hg19::chr19:42947059..42947081,-p2@CXCL17
Hg19::chr19:42947091..42947108,-p1@CXCL17
Hg19::chr19:42947121..42947134,-p3@CXCL17
Hg19::chr19:4640937..4640953,+p@chr19:4640937..4640953
+
Hg19::chr19:4640958..4640969,+p@chr19:4640958..4640969
+
Hg19::chr19:55888186..55888199,+p1@TMEM190
Hg19::chr19:5775165..5775199,+p4@TMEM146
Hg19::chr1:154178803..154178823,-p1@C1orf189
Hg19::chr1:15671561..15671572,+p11@FHAD1
Hg19::chr1:15671580..15671600,+p6@FHAD1
Hg19::chr1:15671608..15671631,+p4@FHAD1
Hg19::chr1:15671919..15671959,+p7@FHAD1
Hg19::chr1:162838597..162838628,-p2@C1orf110
Hg19::chr1:168808636..168808640,+p@chr1:168808636..168808640
+
Hg19::chr1:182286732..182286752,-p@chr1:182286732..182286752
-
Hg19::chr1:183622379..183622388,-p4@APOBEC4
Hg19::chr1:226321068..226321097,+p@chr1:226321068..226321097
+
Hg19::chr1:226321114..226321123,+p@chr1:226321114..226321123
+
Hg19::chr1:32674675..32674701,+p1@DCDC2B
Hg19::chr1:36550025..36550038,+p3@TEKT2
Hg19::chr1:43613612..43613622,+p3@FAM183A
Hg19::chr1:46089703..46089714,-p2@CCDC17
Hg19::chr1:46089718..46089734,-p1@CCDC17
Hg19::chr1:47469854..47469863,+p6@CYP4X1
Hg19::chr1:54405829..54405874,-p7@HSPB11
Hg19::chr1:54405880..54405889,-p11@HSPB11
Hg19::chr1:54483804..54483836,-p1@LDLRAD1
Hg19::chr1:54483842..54483864,-p2@LDLRAD1
Hg19::chr1:99999577..99999585,-p1@ENST00000438829
Hg19::chr20:17608030..17608041,-p@chr20:17608030..17608041
-
Hg19::chr20:31823292..31823295,+p@chr20:31823292..31823295
+
Hg19::chr20:31829188..31829201,+p@chr20:31829188..31829201
+
Hg19::chr20:31870917..31870923,+p7@BPIFB1
Hg19::chr20:31870927..31870969,+p3@BPIFB1
Hg19::chr20:31870971..31871007,+p2@BPIFB1
Hg19::chr20:31871011..31871028,+p1@BPIFB1
Hg19::chr20:31873871..31873883,+p6@BPIFB1
Hg19::chr20:31873884..31873914,+p4@BPIFB1
Hg19::chr20:31873915..31873920,+p10@BPIFB1
Hg19::chr20:31873942..31873945,+p16@BPIFB1
Hg19::chr20:31873956..31873965,+p9@BPIFB1
Hg19::chr20:31876557..31876570,+p@chr20:31876557..31876570
+
Hg19::chr20:31876632..31876642,+p@chr20:31876632..31876642
+
Hg19::chr20:31877688..31877704,+p@chr20:31877688..31877704
+
Hg19::chr20:31877728..31877733,+p@chr20:31877728..31877733
+
Hg19::chr20:31877751..31877767,+p@chr20:31877751..31877767
+
Hg19::chr20:31878802..31878813,+p@chr20:31878802..31878813
+
Hg19::chr20:31878828..31878855,+p@chr20:31878828..31878855
+
Hg19::chr20:31879770..31879785,-p@chr20:31879770..31879785
-
Hg19::chr20:31887696..31887715,+p@chr20:31887696..31887715
+
Hg19::chr20:31889035..31889044,+p@chr20:31889035..31889044
+
Hg19::chr20:31889078..31889083,+p@chr20:31889078..31889083
+
Hg19::chr20:31890784..31890795,+p@chr20:31890784..31890795
+
Hg19::chr20:31890836..31890857,+p@chr20:31890836..31890857
+
Hg19::chr20:43880925..43880936,-p@chr20:43880925..43880936
-
Hg19::chr20:44171301..44171317,-p@chr20:44171301..44171317
-
Hg19::chr20:44171371..44171387,-p@chr20:44171371..44171387
-
Hg19::chr20:47789174..47789184,-p@chr20:47789174..47789184
-
Hg19::chr20:56562819..56562826,-p@chr20:56562819..56562826
-
Hg19::chr20:56562831..56562848,-p@chr20:56562831..56562848
-
Hg19::chr20:56562861..56562875,-p@chr20:56562861..56562875
-
Hg19::chr20:56725952..56725994,+p1@C20orf85
Hg19::chr20:56725995..56726011,+p2@C20orf85
Hg19::chr20:58533512..58533522,+p6@CDH26
Hg19::chr20:58571426..58571431,+p11@CDH26
Hg19::chr20:62581910..62581945,+p@chr20:62581910..62581945
+
Hg19::chr21:35883593..35883609,-p5@KCNE1
Hg19::chr21:44001244..44001253,-p@chr21:44001244..44001253
-
Hg19::chr22:30871257..30871268,+p@chr22:30871257..30871268
+
Hg19::chr22:30871272..30871287,+p@chr22:30871272..30871287
+
Hg19::chr22:37539656..37539669,-p7@IL2RB
Hg19::chr2:128034615..128034657,-p@chr2:128034615..128034657
-
Hg19::chr2:153011996..153012011,+p@chr2:153011996..153012011
+
Hg19::chr2:169923577..169923592,+p6@DHRS9
Hg19::chr2:206628583..206628594,+p20@NRP2
Hg19::chr2:220131154..220131182,+p@chr2:220131154..220131182
+
Hg19::chr2:242242133..242242147,-p46@HDLBP
Hg19::chr2:29204180..29204222,+p2@FAM179A
Hg19::chr2:95537248..95537259,+p2@TEKT4
Hg19::chr2:96560348..96560352,-p@chr2:96560348..96560352
-
Hg19::chr3:137827078..137827102,-p@chr3:137827078..137827102
-
Hg19::chr3:137827109..137827116,-p@chr3:137827109..137827116
-
Hg19::chr3:171561127..171561173,+p1@TMEM212
Hg19::chr3:182983174..182983185,+p30@B3GNT5
Hg19::chr3:183274917..183274929,-p@chr3:183274917..183274929
-
Hg19::chr3:46477553..46477563,-p@chr3:46477553..46477563
-
Hg19::chr3:49837254..49837283,-p1@CDHR4
Hg19::chr3:49837284..49837312,-p2@CDHR4
Hg19::chr3:57530013..57530018,-p4@DNAH12
Hg19::chr3:57530051..57530090,-p1@DNAH12
Hg19::chr3:63638339..63638365,+p1@SNTN
Hg19::chr3:63638372..63638390,+p2@SNTN
Hg19::chr3:63638398..63638409,+p3@SNTN
Hg19::chr3:63799306..63799325,-p@chr3:63799306..63799325
-
Hg19::chr3:9234171..9234183,+p1@SRGAP3-AS2
Hg19::chr3:9234204..9234209,+p3@SRGAP3-AS2
Hg19::chr3:9234218..9234226,+p2@SRGAP3-AS2
Hg19::chr3:93629893..93629924,-p6@PROS1
Hg19::chr3:98520143..98520154,+p23@ST3GAL6
Hg19::chr4:100356844..100356855,-p4@ADH7
Hg19::chr4:11470867..11470879,+p1@ENST00000515343
Hg19::chr4:16125001..16125013,-p@chr4:16125001..16125013
-
Hg19::chr4:173916869..173916878,-p3@uc003isx.1
Hg19::chr4:173916904..173916912,-p2@uc003isx.1
Hg19::chr4:184241420..184241456,-p1@CLDN22
Hg19::chr4:48422254..48422290,+p@chr4:48422254..48422290
+
Hg19::chr4:71296204..71296214,+p12@MUC7
Hg19::chr4:84110792..84110842,-p@chr4:84110792..84110842
-
Hg19::chr5:159614382..159614397,+p4@FABP6
Hg19::chr5:54469001..54469028,-p1@CDC20B
Hg19::chr5:61897065..61897090,+p9@IPO11
Hg19::chr5:80083436..80083449,+p@chr5:80083436..80083449
+
Hg19::chr6:110011704..110011713,-p8@AKD1
Hg19::chr6:116937636..116937691,+p1@RSPH4A
Hg19::chr6:129983034..129983039,-p@chr6:129983034..129983039
-
Hg19::chr6:129983063..129983082,-p@chr6:129983063..129983082
-
Hg19::chr6:139117218..139117235,+p1@ECT2L
Hg19::chr6:139117251..139117273,+p2@ECT2L
Hg19::chr6:139135648..139135664,+p3@ECT2L
Hg19::chr6:150498089..150498126,+p@chr6:150498089..150498126
+
Hg19::chr6:166722976..166722992,+p@chr6:166722976..166722992
+
Hg19::chr6:168294324..168294335,+p20@MLLT4
Hg19::chr6:168294352..168294371,+p6@MLLT4
Hg19::chr6:17102276..17102285,+p4@FLJ23152
Hg19::chr6:17102300..17102312,+p2@FLJ23152
Hg19::chr6:24825525..24825536,-p@chr6:24825525..24825536
-
Hg19::chr6:24825546..24825561,-p@chr6:24825546..24825561
-
Hg19::chr6:24825590..24825591,-p@chr6:24825590..24825591
-
Hg19::chr6:3378254..3378263,-p27@SLC22A23
Hg19::chr6:47708489..47708493,-p1@ENST00000446733
Hg19::chr7:105603672..105603679,+p12@CDHR3
Hg19::chr7:105603683..105603697,+p7@CDHR3
Hg19::chr7:150032711..150032727,+p11@LRRC61
Hg19::chr7:150032730..150032740,+p13@LRRC61
Hg19::chr7:31553698..31553709,+p2@CCDC129
Hg19::chr7:80551688..80551709,-p28@SEMA3C
Hg19::chr8:18028014..18028022,+p5@NAT1
Hg19::chr8:74271144..74271162,+p1@ENST00000518355
p1@ENST00000519134
Hg19::chr9:113054501..113054510,+p@chr9:113054501..113054510
+
Hg19::chr9:113054521..113054531,+p@chr9:113054521..113054531
+
Hg19::chr9:127615715..127615732,+p2@WDR38
Hg19::chr9:127615733..127615756,+p1@WDR38
Hg19::chr9:135754339..135754355,+p6@C9orf9
Hg19::chr9:20726340..20726357,+p@chr9:20726340..20726357
+
Hg19::chr9:35563541..35563550,-p5@FAM166B
Hg19::chr9:79302945..79302964,-p@chr9:79302945..79302964
-
Hg19::chrX:106449835..106449852,+p1@CXorf41
Hg19::chrX:106449869..106449880,+p2@CXorf41
Hg19::chrX:32563360..32563384,-p@chrX:32563360..32563384
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0004745retinol dehydrogenase activity0.0166457643408104
GO:0001539ciliary or flagellar motility0.0166457643408104
GO:0004022alcohol dehydrogenase activity0.0166457643408104
GO:0005858axonemal dynein complex0.0166457643408104
GO:0044447axoneme part0.0166457643408104
GO:0005930axoneme0.0249902617576458
GO:0006664glycolipid metabolic process0.0454098234236558
GO:0042995cell projection0.0485879495834678
GO:0019861flagellum0.0485879495834678
GO:0030855epithelial cell differentiation0.0490211584529905
GO:0008917lipopolysaccharide N-acetylglucosaminyltransferase activity0.0493445582636681
GO:0008457beta-galactosyl-N-acetylglucosaminylgalactosylglucosyl-ceramide beta-1,3-acetylglucosaminyltransferase activity0.0493445582636681



Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

"{{{coexpression_dpi_cluster_scores_median}}}" is not a number.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=Coexpression_cluster:C81&oldid=1703501"